Single-cell ATAC-seq: Strength in numbers

Genome Biology

Volumn 16, Issue 1, 2015, Pages

  Pott, Sebastian ^a   Lieb, Jason D ^a  

^a UNIVERSITY OF CHICAGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CELL COUNT; CELL HETEROGENEITY; CELL ISOLATION; CELL POPULATION; CELL SIZE; CELLULAR DISTRIBUTION; CHROMATIN; DNA SEQUENCE; HUMAN; NONHUMAN; RNA SEQUENCE; SEQUENCE ANALYSIS; SIGNAL TRANSDUCTION; SINGLE CELL ANALYSIS; SINGLE CELL ASSAY FOR TRANSPOSASE ACCESSIBLE CHROMATIN SEQUENCING; ANIMAL; CELLS; EPIGENETICS; GENETIC EPIGENESIS; GENETICS; METABOLISM; PROCEDURES;

CHROMATIN;

ANIMALS; CELLS; CHROMATIN; EPIGENESIS, GENETIC; EPIGENOMICS; HUMANS; SINGLE-CELL ANALYSIS;

EID: 84939548526     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/s13059-015-0737-7     Document Type: Article

References (5)

1. Buenrostro JD, Giresi PG, Zaba LC, Chang HY, Greenleaf WJ. Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position. Nat Methods. 2013;10:1213-128.
2. Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, et al. The accessible chromatin landscape of the human genome. Nature. 2012;488:75-82.
3. Buenrostro JD, Wu B, Litzenburger UM, Ruff D, Gonzales ML, Snyder MP, et al. Single-cell chromatin accessibility reveals principles of regulatory variation. Nature. 2015;523:486-90.
4. Cusanovich DA, Daza R, Adey A, Pliner HA, Christiansen L, Gunderson KL, et al. Epigenetics. Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing. Science. 2015;348:910-4.
5. Macosko EZ, Basu A, Satija R, Nemesh J, Shekhar K, Goldman M, et al. Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets. Cell. 2015;161:1202-14.