PDIviz: Analysis and visualization of protein-DNA binding interfaces

Bioinformatics

Volumn 31, Issue 16, 2015, Pages 2751-2753

  Ribeiro, Judemir ^a   Melo, Francisco ^a   Schüller, Andreas ^a  

^a PONTIFICIA UNIVERSIDAD CATÓLICA DE CHILE   (Chile)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DNA BINDING PROTEIN; SOLVENT;

BIOLOGY; METABOLISM; MOLECULAR MODEL; PROCEDURES; SOFTWARE;

COMPUTATIONAL BIOLOGY; DNA; DNA-BINDING PROTEINS; MODELS, MOLECULAR; SOFTWARE; SOLVENTS;

EID: 84939520208     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btv203     Document Type: Article

References (8)

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3. Hubbard, S. J. and Thornton, J. M. (1993) "NACCESS", Computer Program, Department of Biochemistry and Molecular Biology, University College London, UK.
4. Norambuena, T. and Melo, F. (2010) The Protein-DNA Interface database. BMC Bioinformatics, 11, 262.
5. Rohs, R. et al. (2010) Origins of specificity in protein-DNA recognition. Annu. Rev. Biochem. , 79, 233-269.
6. Seeman, N. C. et al. (1976) Sequence-specific recognition of double helical nucleic acids by proteins. Proc. Natl. Acad. Sci. USA. , 73, 804-808.
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8. Slattery, M. et al. (2014) Absence of a simple code: how transcription factors read the genome. Trends Biochem. Sci. , 39, 381-399.