-
1
-
-
67849122320
-
MEME SUITE: Tools for motif discovery and searching
-
Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS (2009) MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res 37: W202–W208
-
(2009)
Nucleic Acids Res
, vol.37
, pp. W202-W208
-
-
Bailey, T.L.1
Boden, M.2
Buske, F.A.3
Frith, M.4
Grant, C.E.5
Clementi, L.6
Ren, J.7
Li, W.W.8
Noble, W.S.9
-
3
-
-
0025197828
-
Atmospheric carbon dioxide levels over phanerozoic time
-
Berner RA (1990) Atmospheric carbon dioxide levels over phanerozoic time. Science 249: 1382–1386
-
(1990)
Science
, vol.249
, pp. 1382-1386
-
-
Berner, R.A.1
-
4
-
-
84886721972
-
Structural model, physiology and regulation of Slr0006 in Synechocystis PCC 6803
-
Carmel D, Dahlström KM, Holmström M, Allahverdiyeva Y, Battchikova N, Aro EM, Salminen TA, Mulo P (2013) Structural model, physiology and regulation of Slr0006 in Synechocystis PCC 6803. Arch Microbiol 195: 727–736
-
(2013)
Arch Microbiol
, vol.195
, pp. 727-736
-
-
Carmel, D.1
Dahlström, K.M.2
Holmström, M.3
Allahverdiyeva, Y.4
Battchikova, N.5
Aro, E.M.6
Salminen, T.A.7
Mulo, P.8
-
5
-
-
84864082503
-
Regulation of the cyanobacterial CO2-concentrating mechanism involves internal sensing of NADP+ and a-ketogutarate levels by transcription factor CcmR
-
Daley SME, Kappell AD, Carrick MJ, Burnap RL (2012) Regulation of the cyanobacterial CO2-concentrating mechanism involves internal sensing of NADP+ and a-ketogutarate levels by transcription factor CcmR. PLoS ONE 7: e41286
-
(2012)
Plos ONE
, vol.7
-
-
Daley, S.1
Kappell, A.D.2
Carrick, M.J.3
Burnap, R.L.4
-
6
-
-
34547855512
-
Long-term response toward inorganic carbon limitation in wild type and glycolate turnover mutants of the cyanobacterium Synechocystis sp. Strain PCC 6803
-
Eisenhut M, Aguirre von Wobeser E, Jonas L, Schubert H, Ibelings BW, Bauwe H, Matthijs HCP, Hagemann M (2007) Long-term response toward inorganic carbon limitation in wild type and glycolate turnover mutants of the cyanobacterium Synechocystis sp. strain PCC 6803. Plant Physiol 144: 1946–1959
-
(2007)
Plant Physiol
, vol.144
, pp. 1946-1959
-
-
Eisenhut, M.1
Aguirre Von Wobeser, E.2
Jonas, L.3
Schubert, H.4
Ibelings, B.W.5
Bauwe, H.6
Matthijs, H.7
Hagemann, M.8
-
7
-
-
84866931878
-
The antisense RNA As1 flv4 in the cyanobacterium Synechocystis sp. PCC 6803 prevents premature expression of the flv4-2 operon upon shift in inorganic carbon supply
-
Eisenhut M, Georg J, Klähn S, Sakurai I, Mustila H, Zhang P, Hess WR, Aro EM (2012) The antisense RNA As1 flv4 in the cyanobacterium Synechocystis sp. PCC 6803 prevents premature expression of the flv4-2 operon upon shift in inorganic carbon supply. J Biol Chem 287: 33153–33162
-
(2012)
J Biol Chem
, vol.287
, pp. 33153-33162
-
-
Eisenhut, M.1
Georg, J.2
Klähn, S.3
Sakurai, I.4
Mustila, H.5
Zhang, P.6
Hess, W.R.7
Aro, E.M.8
-
8
-
-
57749091442
-
Metabolome phenotyping of inorganic carbon limitation in cells of the wild type and photorespiratory mutants of the cyanobacterium Synechocystis sp. Strain PCC 6803
-
Eisenhut M, Huege J, Schwarz D, Bauwe H, Kopka J, Hagemann M (2008a) Metabolome phenotyping of inorganic carbon limitation in cells of the wild type and photorespiratory mutants of the cyanobacterium Synechocystis sp. strain PCC 6803. Plant Physiol 148: 2109–2120
-
(2008)
Plant Physiol
, vol.148
, pp. 2109-2120
-
-
Eisenhut, M.1
Huege, J.2
Schwarz, D.3
Bauwe, H.4
Kopka, J.5
Hagemann, M.6
-
9
-
-
55949125406
-
The photorespiratory glycolate metabolism is essential for cyanobacteria and might have been conveyed endosymbiontically to plants
-
Eisenhut M, Ruth W, Haimovich M, Bauwe H, Kaplan A, Hagemann M (2008b) The photorespiratory glycolate metabolism is essential for cyanobacteria and might have been conveyed endosymbiontically to plants. Proc Natl Acad Sci USA 105: 17199–17204
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 17199-17204
-
-
Eisenhut, M.1
Ruth, W.2
Haimovich, M.3
Bauwe, H.4
Kaplan, A.5
Hagemann, M.6
-
10
-
-
0035153837
-
Characterization and analysis of an NAD(P)H dehydrogenase transcriptional regulator critical for the survival of cyanobacteria facing inorganic carbon starvation and osmotic stress
-
Figge RM, Cassier-Chauvat C, Chauvat F, Cerff R (2001) Characterization and analysis of an NAD(P)H dehydrogenase transcriptional regulator critical for the survival of cyanobacteria facing inorganic carbon starvation and osmotic stress. Mol Microbiol 39: 455–468
-
(2001)
Mol Microbiol
, vol.39
, pp. 455-468
-
-
Figge, R.M.1
Cassier-Chauvat, C.2
Chauvat, F.3
Cerff, R.4
-
11
-
-
84908252533
-
The small regulatory RNA SyR1/PsrR1 controls photosynthetic functions in cyanobacteria
-
Georg J, Dienst D, Schürgers N, Wallner T, Kopp D, Stazic D, Kuchmina E, Klähn S, Lokstein H, Hess WR, et al (2014) The small regulatory RNA SyR1/PsrR1 controls photosynthetic functions in cyanobacteria. Plant Cell 26: 3661–3679
-
(2014)
Plant Cell
, vol.26
, pp. 3661-3679
-
-
Georg, J.1
Dienst, D.2
Schürgers, N.3
Wallner, T.4
Kopp, D.5
Stazic, D.6
Kuchmina, E.7
Klähn, S.8
Lokstein, H.9
Hess, W.R.10
-
12
-
-
79958047291
-
Cis-Antisense RNA, another level of gene regulation in bacteria
-
Georg J, Hess WR (2011) cis-Antisense RNA, another level of gene regulation in bacteria. Microbiol Mol Biol Rev 75: 286–300
-
(2011)
Microbiol Mol Biol Rev
, vol.75
, pp. 286-300
-
-
Georg, J.1
Hess, W.R.2
-
13
-
-
70349462763
-
Evidence for a major role of antisense RNAs in cyanobacterial gene regulation
-
Georg J, Voss B, Scholz I, Mitschke J, Wilde A, Hess WR (2009) Evidence for a major role of antisense RNAs in cyanobacterial gene regulation. Mol Syst Biol 5: 305
-
(2009)
Mol Syst Biol
, vol.5
, pp. 305
-
-
Georg, J.1
Voss, B.2
Scholz, I.3
Mitschke, J.4
Wilde, A.5
Hess, W.R.6
-
14
-
-
0026544125
-
Conserved motifs in a divergent nod box of Azorhizobium caulinodans ORS571 reveal a common structure in promoters regulated by LysR-type proteins
-
Goethals K, Van Montagu M, Holsters M (1992) Conserved motifs in a divergent nod box of Azorhizobium caulinodans ORS571 reveal a common structure in promoters regulated by LysR-type proteins. Proc Natl Acad Sci USA 89: 1646–1650
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 1646-1650
-
-
Goethals, K.1
Van Montagu, M.2
Holsters, M.3
-
15
-
-
84856757908
-
Low-carbon acclimation in carboxysome-less and photorespiratory mutants of the cyanobacterium Synechocystis sp. Strain PCC 6803
-
Hackenberg C, Huege J, Engelhardt A, Wittink F, Laue M, Matthijs HCP, Kopka J, Bauwe H, Hagemann M (2012) Low-carbon acclimation in carboxysome-less and photorespiratory mutants of the cyanobacterium Synechocystis sp. strain PCC 6803. Microbiology 158: 398–413
-
(2012)
Microbiology
, vol.158
, pp. 398-413
-
-
Hackenberg, C.1
Huege, J.2
Engelhardt, A.3
Wittink, F.4
Laue, M.5
Matthijs, H.6
Kopka, J.7
Bauwe, H.8
Hagemann, M.9
-
16
-
-
80053197094
-
Cyanobacterial lactate oxidases serve as essential partners in N2 fixation and evolved into photorespiratory glycolate oxidases in plants
-
Hackenberg C, Kern R, Hüge J, Stal LJ, Tsuji Y, Kopka J, Shiraiwa Y, Bauwe H, Hagemann M (2011) Cyanobacterial lactate oxidases serve as essential partners in N2 fixation and evolved into photorespiratory glycolate oxidases in plants. Plant Cell 23: 2978–2990
-
(2011)
Plant Cell
, vol.23
, pp. 2978-2990
-
-
Hackenberg, C.1
Kern, R.2
Hüge, J.3
Stal, L.J.4
Tsuji, Y.5
Kopka, J.6
Shiraiwa, Y.7
Bauwe, H.8
Hagemann, M.9
-
17
-
-
84928298049
-
Does 2-phosphoglycolate serve as an internal signal molecule of inorganic carbon deprivation in the cyanobacterium Synechocystis sp. PCC 6803?
-
Haimovich-Dayan M, Lieman-Hurwitz J, Orf I, Hagemann M, Kaplan A (2014) Does 2-phosphoglycolate serve as an internal signal molecule of inorganic carbon deprivation in the cyanobacterium Synechocystis sp. PCC 6803? Environ Microbiol 17: 1794–1804
-
(2014)
Environ Microbiol
, vol.17
, pp. 1794-1804
-
-
Haimovich-Dayan, M.1
Lieman-Hurwitz, J.2
Orf, I.3
Hagemann, M.4
Kaplan, A.5
-
18
-
-
84874161995
-
Adaptation and modification of three CRISPR loci in two closely related cyanobacteria
-
Hein S, Scholz I, Voß B, Hess WR (2013) Adaptation and modification of three CRISPR loci in two closely related cyanobacteria. RNA Biol 10: 852–864
-
(2013)
RNA Biol
, vol.10
, pp. 852-864
-
-
Hein, S.1
Scholz, I.2
Voß, B.3
Hess, W.R.4
-
19
-
-
79251614418
-
Modulation of the major paths of carbon in photorespiratory mutants of Synechocystis
-
Huege J, Goetze J, Schwarz D, Bauwe H, Hagemann M, Kopka J (2011) Modulation of the major paths of carbon in photorespiratory mutants of Synechocystis. PLoS ONE 6: e16278
-
(2011)
Plos ONE
, vol.6
-
-
Huege, J.1
Goetze, J.2
Schwarz, D.3
Bauwe, H.4
Hagemann, M.5
Kopka, J.6
-
20
-
-
79954566035
-
Decision tree supported substructure prediction of metabolites from GC-MS profiles
-
Hummel J, Strehmel N, Selbig J, Walther D, Kopka J (2010) Decision tree supported substructure prediction of metabolites from GC-MS profiles. Metabolomics 6: 322–333
-
(2010)
Metabolomics
, vol.6
, pp. 322-333
-
-
Hummel, J.1
Strehmel, N.2
Selbig, J.3
Walther, D.4
Kopka, J.5
-
22
-
-
55549101294
-
An AbrB-like transcriptional regulator, Sll0822, is essential for the activation of nitrogen-regulated genes in Synechocystis sp. PCC 6803
-
Ishii A, Hihara Y (2008) An AbrB-like transcriptional regulator, Sll0822, is essential for the activation of nitrogen-regulated genes in Synechocystis sp. PCC 6803. Plant Physiol 148: 660–670
-
(2008)
Plant Physiol
, vol.148
, pp. 660-670
-
-
Ishii, A.1
Hihara, Y.2
-
23
-
-
84878439147
-
Deletion of the transcriptional regulator cyAbrB2 deregulates primary carbon metabolism in Synechocystis sp. PCC 6803
-
Kaniya Y, Kizawa A, Miyagi A, Kawai-Yamada M, Uchimiya H, Kaneko Y, Nishiyama Y, Hihara Y (2013) Deletion of the transcriptional regulator cyAbrB2 deregulates primary carbon metabolism in Synechocystis sp. PCC 6803. Plant Physiol 162: 1153–1163
-
(2013)
Plant Physiol
, vol.162
, pp. 1153-1163
-
-
Kaniya, Y.1
Kizawa, A.2
Miyagi, A.3
Kawai-Yamada, M.4
Uchimiya, H.5
Kaneko, Y.6
Nishiyama, Y.7
Hihara, Y.8
-
24
-
-
0033499007
-
CO2 concentrating mechanisms in photosynthetic microorganisms
-
Kaplan A, Reinhold L (1999) CO2 concentrating mechanisms in photosynthetic microorganisms. Annu Rev Plant Physiol Plant Mol Biol 50: 539–570
-
(1999)
Annu Rev Plant Physiol Plant Mol Biol
, vol.50
, pp. 539-570
-
-
Kaplan, A.1
Reinhold, L.2
-
25
-
-
0037982297
-
Chloroplast phosphofructokinase: II. Partial purification, kinetic and regulatory properties
-
Kelly GJ, Latzko E (1977) Chloroplast phosphofructokinase: II. Partial purification, kinetic and regulatory properties. Plant Physiol 60: 295–299
-
(1977)
Plant Physiol
, vol.60
, pp. 295-299
-
-
Kelly, G.J.1
Latzko, E.2
-
26
-
-
84906677138
-
Alkane biosynthesis genes in cyanobacteria and their transcriptional organization
-
Klähn S, Baumgartner D, Pfreundt U, Voigt K, Schön V, Steglich C, Hess WR (2014) Alkane biosynthesis genes in cyanobacteria and their transcriptional organization. Front Bioeng Biotechnol 2: 24
-
(2014)
Front Bioeng Biotechnol
, vol.2
, pp. 24
-
-
Klähn, S.1
Baumgartner, D.2
Pfreundt, U.3
Voigt, K.4
Schön, V.5
Steglich, C.6
Hess, W.R.7
-
27
-
-
84928740583
-
Variations in the noncoding transcriptome as a driver of inter-strain divergence and physiological adaptation in bacteria
-
Kopf M, Klähn S, Scholz I, Hess WR, Voss B (2015) Variations in the noncoding transcriptome as a driver of inter-strain divergence and physiological adaptation in bacteria. Sci Rep 5: 9560
-
(2015)
Sci Rep
, vol.5
, pp. 9560
-
-
Kopf, M.1
Klähn, S.2
Scholz, I.3
Hess, W.R.4
Voss, B.5
-
28
-
-
84908187157
-
Comparative analysis of the primary transcriptome of Synechocystis sp. PCC 6803
-
Kopf M, Klähn S, Scholz I, Matthiessen JKF, Hess WR, Voß B (2014a) Comparative analysis of the primary transcriptome of Synechocystis sp. PCC 6803. DNA Res 21: 527–539
-
(2014)
DNA Res
, vol.21
, pp. 527-539
-
-
Kopf, M.1
Klähn, S.2
Scholz, I.3
Matthiessen, J.4
Hess, W.R.5
Voß, B.6
-
29
-
-
85003422186
-
Finished genome sequence of the unicellular cyanobacterium Synechocystis sp. Strain PCC 6714
-
Kopf M, Klähn S, Voss B, Stüber K, Huettel B, Reinhardt R, Hess WR (2014b) Finished genome sequence of the unicellular cyanobacterium Synechocystis sp. strain PCC 6714. Genome Announc 2: e00757-14
-
(2014)
Genome Announc
, vol.2
, pp. e00e14-e00757
-
-
Kopf, M.1
Klähn, S.2
Voss, B.3
Stüber, K.4
Huettel, B.5
Reinhardt, R.6
Hess, W.R.7
-
30
-
-
63849164016
-
A cyanobacterial AbrB-like protein affects the apparent photosynthetic affinity for CO2 by modulating low-CO2-induced gene expression
-
Lieman-Hurwitz J, Haimovich M, Shalev-Malul G, Ishii A, Hihara Y, Gaathon A, Lebendiker M, Kaplan A (2009) A cyanobacterial AbrB-like protein affects the apparent photosynthetic affinity for CO2 by modulating low-CO2-induced gene expression. Environ Microbiol 11: 927–936
-
(2009)
Environ Microbiol
, vol.11
, pp. 927-936
-
-
Lieman-Hurwitz, J.1
Haimovich, M.2
Shalev-Malul, G.3
Ishii, A.4
Hihara, Y.5
Gaathon, A.6
Lebendiker, M.7
Kaplan, A.8
-
31
-
-
58949097886
-
Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins
-
Maddocks SE, Oyston PCF (2008) Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins. Microbiology 154: 3609–3623
-
(2008)
Microbiology
, vol.154
, pp. 3609-3623
-
-
Maddocks, S.E.1
Oyston, P.2
-
32
-
-
79952174199
-
An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803
-
Mitschke J, Georg J, Scholz I, Sharma CM, Dienst D, Bantscheff J, Voss B, Steglich C, Wilde A, Vogel J, et al (2011) An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803. Proc Natl Acad Sci USA 108: 2124–2129
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 2124-2129
-
-
Mitschke, J.1
Georg, J.2
Scholz, I.3
Sharma, C.M.4
Dienst, D.5
Bantscheff, J.6
Voss, B.7
Steglich, C.8
Wilde, A.9
Vogel, J.10
-
33
-
-
83255165490
-
Novel photosensory two-component system (PixA-NixB-NixC) involved in the regulation of positive and negative phototaxis of cyanobacterium Synechocystis sp. PCC 6803
-
Narikawa R, Suzuki F, Yoshihara S, Higashi S, Watanabe M, Ikeuchi M (2011) Novel photosensory two-component system (PixA-NixB-NixC) involved in the regulation of positive and negative phototaxis of cyanobacterium Synechocystis sp. PCC 6803. Plant Cell Physiol 52: 2214–2224
-
(2011)
Plant Cell Physiol
, vol.52
, pp. 2214-2224
-
-
Narikawa, R.1
Suzuki, F.2
Yoshihara, S.3
Higashi, S.4
Watanabe, M.5
Ikeuchi, M.6
-
34
-
-
40549142092
-
Mechanism of low CO2-induced activation of the cmp bicarbonate transporter operon by a LysR family protein in the cyanobacterium Synechococcus elongatus strain PCC 7942
-
Nishimura T, Takahashi Y, Yamaguchi O, Suzuki H, Maeda S, Omata T (2008) Mechanism of low CO2-induced activation of the cmp bicarbonate transporter operon by a LysR family protein in the cyanobacterium Synechococcus elongatus strain PCC 7942. Mol Microbiol 68: 98–109
-
(2008)
Mol Microbiol
, vol.68
, pp. 98-109
-
-
Nishimura, T.1
Takahashi, Y.2
Yamaguchi, O.3
Suzuki, H.4
Maeda, S.5
Omata, T.6
-
35
-
-
0009704835
-
Purification and characterization of phosphoglycolate phosphatase from the cyanobacterium Coccochloris peniocystis
-
Norman EG, Colman B (1991) Purification and characterization of phosphoglycolate phosphatase from the cyanobacterium Coccochloris peniocystis. Plant Physiol 95: 693–698
-
(1991)
Plant Physiol
, vol.95
, pp. 693-698
-
-
Norman, E.G.1
Colman, B.2
-
36
-
-
84920407529
-
The plastid ancestor originated among one of the major cyanobacterial lineages
-
Ochoa de Alda JAG, Esteban R, Diago ML, Houmard J (2014) The plastid ancestor originated among one of the major cyanobacterial lineages. Nat Commun 5: 4937
-
(2014)
Nat Commun
, vol.5
, pp. 4937
-
-
Ochoa De Alda, J.1
Esteban, R.2
Diago, M.L.3
Houmard, J.4
-
37
-
-
0035109231
-
Involvement of a CbbR homolog in low CO2-induced activation of the bicarbonate transporter operon in cyanobacteria
-
Omata T, Gohta S, Takahashi Y, Harano Y, Maeda S (2001) Involvement of a CbbR homolog in low CO2-induced activation of the bicarbonate transporter operon in cyanobacteria. J Bacteriol 183: 1891–1898
-
(2001)
J Bacteriol
, vol.183
, pp. 1891-1898
-
-
Omata, T.1
Gohta, S.2
Takahashi, Y.3
Harano, Y.4
Maeda, S.5
-
38
-
-
0033539480
-
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. Strain PCC 7942
-
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T (1999) Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942. Proc Natl Acad Sci USA 96: 13571–13576
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 13571-13576
-
-
Omata, T.1
Price, G.D.2
Badger, M.R.3
Okamura, M.4
Gohta, S.5
Ogawa, T.6
-
39
-
-
69049106519
-
Analysis of current and alternative phenol based RNA extraction methodologies for cyanobacteria
-
Pinto FL, Thapper A, Sontheim W, Lindblad P (2009) Analysis of current and alternative phenol based RNA extraction methodologies for cyanobacteria. BMC Mol Biol 10: 79
-
(2009)
BMC Mol Biol
, vol.10
, pp. 79
-
-
Pinto, F.L.1
Thapper, A.2
Sontheim, W.3
Lindblad, P.4
-
40
-
-
44649180011
-
Advances in understanding the cyanobacterial CO2-concentrating-mechanism (CCM): Functional components, Ci transporters, diversity, genetic regulation and prospects for engineering into plants
-
Price GD, Badger MR, Woodger FJ, Long BM (2008) Advances in understanding the cyanobacterial CO2-concentrating-mechanism (CCM): functional components, Ci transporters, diversity, genetic regulation and prospects for engineering into plants. J Exp Bot 59: 1441–1461
-
(2008)
J Exp Bot
, vol.59
, pp. 1441-1461
-
-
Price, G.D.1
Badger, M.R.2
Woodger, F.J.3
Long, B.M.4
-
41
-
-
0018409915
-
Generic assignments, strain histories and properties of pure cultures of cyanobacteria
-
Rippka R, Deruelles J, Waterbury JB, Herdman M, Stanier RY (1979) Generic assignments, strain histories and properties of pure cultures of cyanobacteria. J Gen Microbiol 111: 1–61
-
(1979)
J Gen Microbiol
, vol.111
, pp. 1-61
-
-
Rippka, R.1
Deruelles, J.2
Waterbury, J.B.3
Herdman, M.4
Stanier, R.Y.5
-
42
-
-
0037311919
-
TM4: A free, open-source system for microarray data management and analysis
-
Saeed AI, Sharov V, White J, Li J, Liang W, Bhagabati N, Braisted J, Klapa M, Currier T, Thiagarajan M, et al (2003) TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34: 374–378
-
(2003)
Biotechniques
, vol.34
, pp. 374-378
-
-
Saeed, A.I.1
Sharov, V.2
White, J.3
Li, J.4
Liang, W.5
Bhagabati, N.6
Braisted, J.7
Klapa, M.8
Currier, T.9
Thiagarajan, M.10
-
43
-
-
84867135315
-
Positive regulation of psbA gene expression by cis-encoded antisense RNAs in Synechocystis sp. PCC 6803
-
Sakurai I, Stazic D, Eisenhut M, Vuorio E, Steglich C, Hess WR, Aro EM (2012) Positive regulation of psbA gene expression by cis-encoded antisense RNAs in Synechocystis sp. PCC 6803. Plant Physiol 160: 1000–1010
-
(2012)
Plant Physiol
, vol.160
, pp. 1000-1010
-
-
Sakurai, I.1
Stazic, D.2
Eisenhut, M.3
Vuorio, E.4
Steglich, C.5
Hess, W.R.6
Aro, E.M.7
-
44
-
-
0027446708
-
Molecular biology of the LysR family of transcriptional regulators
-
Schell MA (1993) Molecular biology of the LysR family of transcriptional regulators. Annu Rev Microbiol 47: 597–626
-
(1993)
Annu Rev Microbiol
, vol.47
, pp. 597-626
-
-
Schell, M.A.1
-
45
-
-
79953704007
-
Metabolic and transcriptomic phenotyping of inorganic carbon acclimation in the cyanobacterium Synechococcus elongatus PCC 7942
-
Schwarz D, Nodop A, Hüge J, Purfürst S, Forchhammer K, Michel KP, Bauwe H, Kopka J, Hagemann M (2011) Metabolic and transcriptomic phenotyping of inorganic carbon acclimation in the cyanobacterium Synechococcus elongatus PCC 7942. Plant Physiol 155: 1640–1655
-
(2011)
Plant Physiol
, vol.155
, pp. 1640-1655
-
-
Schwarz, D.1
Nodop, A.2
Hüge, J.3
Purfürst, S.4
Forchhammer, K.5
Michel, K.P.6
Bauwe, H.7
Kopka, J.8
Hagemann, M.9
-
46
-
-
85016502347
-
Recent applications of metabolomics toward cyanobacteria
-
Schwarz D, Orf I, Kopka J, Hagemann M (2013) Recent applications of metabolomics toward cyanobacteria. Metabolites 3: 72–100
-
(2013)
Metabolites
, vol.3
, pp. 72-100
-
-
Schwarz, D.1
Orf, I.2
Kopka, J.3
Hagemann, M.4
-
47
-
-
84922061523
-
Effects of inorganic carbon limitation on the metabolome of the Synechocystis sp. PCC 6803 mutant defective in glnB encoding the central regulator PII of cyanobacterial C/N acclimation
-
Schwarz D, Orf I, Kopka J, Hagemann M (2014) Effects of inorganic carbon limitation on the metabolome of the Synechocystis sp. PCC 6803 mutant defective in glnB encoding the central regulator PII of cyanobacterial C/N acclimation. Metabolites 4: 232–247
-
(2014)
Metabolites
, vol.4
, pp. 232-247
-
-
Schwarz, D.1
Orf, I.2
Kopka, J.3
Hagemann, M.4
-
48
-
-
0035949508
-
Distinct constitutive and low-CO2-induced CO2 uptake systems in cyanobacteria: Genes involved and their phylogenetic relationship with homologous genes in other organisms
-
Shibata M, Ohkawa H, Kaneko T, Fukuzawa H, Tabata S, Kaplan A, Ogawa T (2001) Distinct constitutive and low-CO2-induced CO2 uptake systems in cyanobacteria: genes involved and their phylogenetic relationship with homologous genes in other organisms. Proc Natl Acad Sci USA 98: 11789–11794
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 11789-11794
-
-
Shibata, M.1
Ohkawa, H.2
Kaneko, T.3
Fukuzawa, H.4
Tabata, S.5
Kaplan, A.6
Ogawa, T.7
-
49
-
-
0037019798
-
Characterization of a stress-responsive operon in the cyanobacterium Synechocystis sp. Strain PCC 6803
-
Singh AK, Sherman LA (2002) Characterization of a stress-responsive operon in the cyanobacterium Synechocystis sp. strain PCC 6803. Gene 297: 11–19
-
(2002)
Gene
, vol.297
, pp. 11-19
-
-
Singh, A.K.1
Sherman, L.A.2
-
50
-
-
79960587148
-
Near-UV cyanobacteriochrome signaling system elicits negative phototaxis in the cyanobacterium Synechocystis sp. PCC 6803
-
Song JY, Cho HS, Cho JI, Jeon JS, Lagarias JC, Park YI (2011) Near-UV cyanobacteriochrome signaling system elicits negative phototaxis in the cyanobacterium Synechocystis sp. PCC 6803. Proc Natl Acad Sci USA 108: 10780–10785
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 10780-10785
-
-
Song, J.Y.1
Cho, H.S.2
Cho, J.I.3
Jeon, J.S.4
Lagarias, J.C.5
Park, Y.I.6
-
51
-
-
50849096398
-
The challenge of regulation in a minimal photoautotroph: Noncoding RNAs in Prochlorococcus
-
Steglich C, Futschik ME, Lindell D, Voss B, Chisholm SW, Hess WR (2008) The challenge of regulation in a minimal photoautotroph: noncoding RNAs in Prochlorococcus. PLoS Genet 4: e1000173
-
(2008)
Plos Genet
, vol.4
-
-
Steglich, C.1
Futschik, M.E.2
Lindell, D.3
Voss, B.4
Chisholm, S.W.5
Hess, W.R.6
-
52
-
-
48749132126
-
Retention index thresholds for compound matching in GC-MS metabolite profiling
-
Strehmel N, Hummel J, Erban A, Strassburg K, Kopka J (2008) Retention index thresholds for compound matching in GC-MS metabolite profiling. J Chromatogr B Analyt Technol Biomed Life Sci 871: 182–190
-
(2008)
J Chromatogr B Analyt Technol Biomed Life Sci
, vol.871
, pp. 182-190
-
-
Strehmel, N.1
Hummel, J.2
Erban, A.3
Strassburg, K.4
Kopka, J.5
-
53
-
-
80055112810
-
Addressing the grand challenge of atmospheric carbon dioxide: Geologic sequestration vs. Biological recycling
-
Stuart BJ (2011) Addressing the grand challenge of atmospheric carbon dioxide: geologic sequestration vs. biological recycling. J Biol Eng 5: 14
-
(2011)
J Biol Eng
, vol.5
, pp. 14
-
-
Stuart, B.J.1
-
54
-
-
1242339627
-
Alterations in global patterns of gene expression in Synechocystis sp. PCC 6803 in response to inorganic carbon limitation and the inactivation of ndhR, a LysR family regulator
-
Wang HL, Postier BL, Burnap RL (2004) Alterations in global patterns of gene expression in Synechocystis sp. PCC 6803 in response to inorganic carbon limitation and the inactivation of ndhR, a LysR family regulator. J Biol Chem 279: 5739–5751
-
(2004)
J Biol Chem
, vol.279
, pp. 5739-5751
-
-
Wang, H.L.1
Postier, B.L.2
Burnap, R.L.3
-
55
-
-
34247640781
-
Transcriptional regulation of the CO2-concentrating mechanism in a euryhaline, coastal marine cyanobacterium, Synechococcus sp. Strain PCC 7002: Role of NdhR/CcmR
-
Woodger FJ, Bryant DA, Price GD (2007) Transcriptional regulation of the CO2-concentrating mechanism in a euryhaline, coastal marine cyanobacterium, Synechococcus sp. strain PCC 7002: role of NdhR/CcmR. J Bacteriol 189: 3335–3347
-
(2007)
J Bacteriol
, vol.189
, pp. 3335-3347
-
-
Woodger, F.J.1
Bryant, D.A.2
Price, G.D.3
-
56
-
-
79960387169
-
Physiological roles of the cyAbrB transcriptional regulator pair Sll0822 and Sll0359 in Synechocystis sp. Strain PCC 6803
-
Yamauchi Y, Kaniya Y, Kaneko Y, Hihara Y (2011) Physiological roles of the cyAbrB transcriptional regulator pair Sll0822 and Sll0359 in Synechocystis sp. strain PCC 6803. J Bacteriol 193: 3702–3709
-
(2011)
J Bacteriol
, vol.193
, pp. 3702-3709
-
-
Yamauchi, Y.1
Kaniya, Y.2
Kaneko, Y.3
Hihara, Y.4
-
57
-
-
80555122963
-
Mapping photoautotrophic metabolism with isotopically nonstationary 13C flux analysis
-
Young JD, Shastri AA, Stephanopoulos G, Morgan JA (2011) Mapping photoautotrophic metabolism with isotopically nonstationary 13C flux analysis. Metab Eng 13: 656–665
-
(2011)
Metab Eng
, vol.13
, pp. 656-665
-
-
Young, J.D.1
Shastri, A.A.2
Stephanopoulos, G.3
Morgan, J.A.4
-
58
-
-
84863321262
-
Operon flv4-flv2 provides cyanobacterial photosystem II with flexibility of electron transfer
-
Zhang P, Eisenhut M, Brandt AM, Carmel D, Silén HM, Vass I, Allahverdiyeva Y, Salminen TA, Aro EM (2012) Operon flv4-flv2 provides cyanobacterial photosystem II with flexibility of electron transfer. Plant Cell 24: 1952–1971
-
(2012)
Plant Cell
, vol.24
, pp. 1952-1971
-
-
Zhang, P.1
Eisenhut, M.2
Brandt, A.M.3
Carmel, D.4
Silén, H.M.5
Vass, I.6
Allahverdiyeva, Y.7
Salminen, T.A.8
Aro, E.M.9
|