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Volumn 7, Issue 1, 2015, Pages

Optimizing drug-target interaction prediction based on random walk on heterogeneous networks

Author keywords

Chemical fingerprints; Drug; Prediction; Random walk with restart; Targets

Indexed keywords


EID: 84939224628     PISSN: None     EISSN: 17582946     Source Type: Journal    
DOI: 10.1186/s13321-015-0089-z     Document Type: Article
Times cited : (59)

References (21)
  • 1
    • 84860674656 scopus 로고    scopus 로고
    • Systems chemical biology and the Semantic Web: What they mean for the future of drug discovery research
    • 1:CAS:528:DC%2BC38XmslygsLc%3D
    • Wild DJ, Ding Y, Sheth AP, Harland L, Gifford EM, Lajiness MS (2012) Systems chemical biology and the Semantic Web: what they mean for the future of drug discovery research. Drug Discov Today 17:469-474
    • (2012) Drug Discov Today , vol.17 , pp. 469-474
    • Wild, D.J.1    Ding, Y.2    Sheth, A.P.3    Harland, L.4    Gifford, E.M.5    Lajiness, M.S.6
  • 2
    • 69849094133 scopus 로고    scopus 로고
    • Supervised prediction of drug-target interactions using bipartite local models
    • 1:CAS:528:DC%2BD1MXhtFSnsrfJ
    • Bleakley K, Yamanishi Y (2009) Supervised prediction of drug-target interactions using bipartite local models. Bioinformatics 25:2397-2403
    • (2009) Bioinformatics , vol.25 , pp. 2397-2403
    • Bleakley, K.1    Yamanishi, Y.2
  • 3
    • 84862215494 scopus 로고    scopus 로고
    • Drug-target interaction prediction by random walk on the heterogeneous network
    • 1:CAS:528:DC%2BC38Xot1aqt7k%3D
    • Chen X, Liu MX, Yan GY (2012) Drug-target interaction prediction by random walk on the heterogeneous network. Mol BioSyst 8:1970-1978
    • (2012) Mol BioSyst , vol.8 , pp. 1970-1978
    • Chen, X.1    Liu, M.X.2    Yan, G.Y.3
  • 4
    • 77953907294 scopus 로고    scopus 로고
    • Chem2Bio2RDF: A semantic framework for linking and mining chemogenomic and systems chemical biology data
    • Chen B, Dong X, Jiao D, Wang H, Zhu Q, Ding Y et al (2010) Chem2Bio2RDF: a semantic framework for linking and mining chemogenomic and systems chemical biology data. BMC Bioinform 2010(11):255
    • (2010) BMC Bioinform , vol.2010 , Issue.11 , pp. 255
    • Chen, B.1    Dong, X.2    Jiao, D.3    Wang, H.4    Zhu, Q.5    Ding, Y.6
  • 5
    • 84864614370 scopus 로고    scopus 로고
    • Assessing drug target association using semantic linked data
    • 10.1371/journal.pcbi.1002574 1:CAS:528:DC%2BC38XhtVars7%2FF
    • Chen B, Ding Y, Wild DJ (2012) Assessing drug target association using semantic linked data. PLoS Comput Biol 8(7):e1002574. doi: 10.1371/journal.pcbi.1002574
    • (2012) PLoS Comput Biol , vol.8 , Issue.7
    • Chen, B.1    Ding, Y.2    Wild, D.J.3
  • 6
    • 78651287426 scopus 로고    scopus 로고
    • DrugBank 3.0: A comprehensive resource for 'omics' research on drugs
    • Knox C, Law V, Jewison T, Liu P, Ly S, Frolkis A et al (2011) DrugBank 3.0: a comprehensive resource for 'omics' research on drugs. Nucleic Acids Res 39(Database issue):D1035-D1041
    • (2011) Nucleic Acids Res , vol.34 , Issue.DATABASE ISSUE , pp. D668-D672
    • Knox, C.1    Law, V.2    Jewison, T.3    Liu, P.4    Ly, S.5    Frolkis, A.6
  • 7
    • 0038589165 scopus 로고    scopus 로고
    • The anatomy of a large-scale hypertextual Web search engine
    • Sergey B, Lawrence P (1998) The anatomy of a large-scale hypertextual Web search engine. Comput Netw ISDN Syst 30(1-7):107-117
    • (1998) Comput Netw ISDN Syst , vol.30 , Issue.1-7 , pp. 107-117
    • Sergey, B.1    Lawrence, P.2
  • 9
    • 77952772341 scopus 로고    scopus 로고
    • Extended-connectivity fingerprints
    • 1:CAS:528:DC%2BC3cXlt1Onsbg%3D
    • Rogers D, Hahn M (2010) Extended-connectivity fingerprints. JCIM 50:742-754
    • (2010) JCIM , vol.50 , pp. 742-754
    • Rogers, D.1    Hahn, M.2
  • 10
    • 84939232165 scopus 로고    scopus 로고
    • Accessed 4 May 2013
    • https://community.accelrys.com/message/2357#2357. Accessed 4 May 2013
  • 12
    • 0000293407 scopus 로고
    • The generation of a unique machine description for chemical structures - A technique developed at chemical abstracts service
    • 1:CAS:528:DyaF2MXkt1Omtr0%3D
    • Morgan HL (1965) The generation of a unique machine description for chemical structures - a technique developed at chemical abstracts service. J Chem Doc 5:107-112
    • (1965) J Chem Doc , vol.5 , pp. 107-112
    • Morgan, H.L.1
  • 15
    • 41549139527 scopus 로고    scopus 로고
    • Walking the interactome for prioritization of candidate disease genes
    • Köhler S (2008) Walking the interactome for prioritization of candidate disease genes. Am J Hum Genet 82:949-958
    • (2008) Am J Hum Genet , vol.82 , pp. 949-958
    • Köhler, S.1
  • 16
    • 84876717968 scopus 로고    scopus 로고
    • Enhanced ranking of PknB Inhibitors using data fusion methods
    • Consortium O, 1:CAS:528:DC%2BC3sXlvVyhtL0%3D
    • Seal A, Yogeeswari P, Sriram D, Consortium O, Wild DJ (2013) Enhanced ranking of PknB Inhibitors using data fusion methods. J Cheminform 5:2
    • (2013) J Cheminform , vol.5 , pp. 2
    • Seal, A.1    Yogeeswari, P.2    Sriram, D.3    Wild, D.J.4
  • 17
    • 34247272948 scopus 로고    scopus 로고
    • Evaluating VS methods: Good and bad metrics for the "early recognition" problem
    • 1:CAS:528:DC%2BD2sXhsVCgtLY%3D
    • Truchon J-F, Bayly CI (2007) Evaluating VS methods: good and bad metrics for the "early recognition" problem. J Chem Inf Model 47:488-508
    • (2007) J Chem Inf Model , vol.47 , pp. 488-508
    • Truchon, J.-F.1    Bayly, C.I.2
  • 18
    • 84939246838 scopus 로고    scopus 로고
    • Accessed 10 Sept 2014
    • http://cbc.arizona.edu/njardarson/group/top-pharmaceuticals-poster. Accessed 10 Sept 2014
  • 19
  • 20
    • 0033861845 scopus 로고    scopus 로고
    • The multiplicity of serotonin receptors: Uselessly diverse molecules or an embarrassment of riches
    • 1:CAS:528:DC%2BD3cXlvVyhsr8%3D
    • Roth BL, Lopez E, Patel S, Kroeze WK (2000) The multiplicity of serotonin receptors: uselessly diverse molecules or an embarrassment of riches. Neuroscientist 6:252-262
    • (2000) Neuroscientist , vol.6 , pp. 252-262
    • Roth, B.L.1    Lopez, E.2    Patel, S.3    Kroeze, W.K.4
  • 21
    • 67849104638 scopus 로고    scopus 로고
    • PubChem: A public information system for analyzing bioactivities of small molecules
    • 1:CAS:528:DC%2BD1MXosFSktL8%3D
    • Wang Y, Xiao J, Suzek TO, Zhang J, Wang J, Bryant SH (2009) PubChem: a public information system for analyzing bioactivities of small molecules. Nucleic Acids Res 37:W623-W633
    • (2009) Nucleic Acids Res , vol.37 , pp. W623-W633
    • Wang, Y.1    Xiao, J.2    Suzek, T.O.3    Zhang, J.4    Wang, J.5    Bryant, S.H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.