메뉴 건너뛰기




Volumn 16, Issue 1, 2015, Pages

Sex chromosome-to-autosome transposition events counter Y-chromosome gene loss in mammals

Author keywords

[No Author keywords available]

Indexed keywords

INITIATION FACTOR 1; INITIATION FACTOR 2; SUMO 1 PROTEIN; EUKARYOTIC PEPTIDE INITIATION FACTOR-1A; UBIQUITIN PROTEIN LIGASE;

EID: 84939141047     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/s13059-015-0667-4     Document Type: Article
Times cited : (50)

References (29)
  • 2
    • 0344961754 scopus 로고    scopus 로고
    • X-chromosomal localization of mammalian Y-linked genes in two XO species of the Ryukyu spiny rat
    • Arakawa Y, Nishida-Umehara C, Matsuda Y, Sutou S, Suzuki H. X-chromosomal localization of mammalian Y-linked genes in two XO species of the Ryukyu spiny rat. Cytogenet Genome Res. 2002;99:303-9.
    • (2002) Cytogenet Genome Res. , vol.99 , pp. 303-309
    • Arakawa, Y.1    Nishida-Umehara, C.2    Matsuda, Y.3    Sutou, S.4    Suzuki, H.5
  • 3
    • 77957738197 scopus 로고    scopus 로고
    • The process of a Y-loss event in an XO/XO mammal, the Ryukyu spiny rat
    • Kuroiwa A, Ishiguchi Y, Yamada F, Shintaro A, Matsuda Y. The process of a Y-loss event in an XO/XO mammal, the Ryukyu spiny rat. Chromosoma. 2010;119:519-26.
    • (2010) Chromosoma. , vol.119 , pp. 519-526
    • Kuroiwa, A.1    Ishiguchi, Y.2    Yamada, F.3    Shintaro, A.4    Matsuda, Y.5
  • 4
    • 0346752110 scopus 로고    scopus 로고
    • Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome
    • Zhang Z, Harrison PM, Liu Y, Gerstein M. Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome. Genome Res. 2003;13:2541-58.
    • (2003) Genome Res. , vol.13 , pp. 2541-2558
    • Zhang, Z.1    Harrison, P.M.2    Liu, Y.3    Gerstein, M.4
  • 5
    • 0035051714 scopus 로고    scopus 로고
    • The human Y chromosome derives largely from a single autosomal region added to the sex chromosomes 80-130 million years ago
    • Waters PD, Duffy B, Frost CJ, Delbridge ML, Graves JA. The human Y chromosome derives largely from a single autosomal region added to the sex chromosomes 80-130 million years ago. Cytogenet Cell Genet. 2001;92:74-9.
    • (2001) Cytogenet Cell Genet. , vol.92 , pp. 74-79
    • Waters, P.D.1    Duffy, B.2    Frost, C.J.3    Delbridge, M.L.4    Graves, J.A.5
  • 7
    • 7344231093 scopus 로고    scopus 로고
    • Characterization of genes encoding translation initiation factor eIF-2gamma in mouse and human: sex chromosome localization, escape from X-inactivation and evolution
    • Ehrmann IE, Ellis PS, Mazeyrat S, Duthie S, Brockdorff N, Mattei MG, et al. Characterization of genes encoding translation initiation factor eIF-2gamma in mouse and human: sex chromosome localization, escape from X-inactivation and evolution. Hum Mol Genet. 1998;7:1725-37.
    • (1998) Hum Mol Genet. , vol.7 , pp. 1725-1737
    • Ehrmann, I.E.1    Ellis, P.S.2    Mazeyrat, S.3    Duthie, S.4    Brockdorff, N.5    Mattei, M.G.6
  • 8
    • 84892721653 scopus 로고    scopus 로고
    • Two Y genes can replace the entire Y chromosome for assisted reproduction in the mouse
    • Yamauchi Y, Riel JM, Stoytcheva Z, Ward MA. Two Y genes can replace the entire Y chromosome for assisted reproduction in the mouse. Science. 2014;343:69-72.
    • (2014) Science. , vol.343 , pp. 69-72
    • Yamauchi, Y.1    Riel, J.M.2    Stoytcheva, Z.3    Ward, M.A.4
  • 9
    • 84862777341 scopus 로고    scopus 로고
    • Strict evolutionary conservation followed rapid gene loss on human and rhesus Y chromosomes
    • Hughes JF, Skaletsky HS, Brown LG, Pyntikova T, Graves TA, Fulton RS, et al. Strict evolutionary conservation followed rapid gene loss on human and rhesus Y chromosomes. Nature 2012;483:82-7.
    • (2012) Nature , vol.483 , pp. 82-87
    • Hughes, J.F.1    Skaletsky, H.S.2    Brown, L.G.3    Pyntikova, T.4    Graves, T.A.5    Fulton, R.S.6
  • 10
    • 0037967242 scopus 로고    scopus 로고
    • The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes
    • Skaletsky H, Kuroda-Kawaguchi T, Minx PJ, Cordum HS, Hillier L, Brown LG, et al. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Nature. 2003;423:825-37.
    • (2003) Nature. , vol.423 , pp. 825-837
    • Skaletsky, H.1    Kuroda-Kawaguchi, T.2    Minx, P.J.3    Cordum, H.S.4    Hillier, L.5    Brown, L.G.6
  • 11
    • 0037115828 scopus 로고    scopus 로고
    • Functional second genes generated by retrotransposition of the X-linked ribosomal protein genes
    • Uechi T, Maeda N, Tanaka T, Kenmochi N. Functional second genes generated by retrotransposition of the X-linked ribosomal protein genes. Nucleic Acids Res. 2002;30:5369-75.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 5369-5375
    • Uechi, T.1    Maeda, N.2    Tanaka, T.3    Kenmochi, N.4
  • 12
    • 0025790212 scopus 로고
    • Homology of a candidate spermatogenic gene from the mouse Y chromosome to the ubiquitin-activating enzyme E1
    • Mitchell MJ, Woods DR, Tucker PK, Opp JS, Bishop CE. Homology of a candidate spermatogenic gene from the mouse Y chromosome to the ubiquitin-activating enzyme E1. Nature. 1991;354:483-6.
    • (1991) Nature. , vol.354 , pp. 483-486
    • Mitchell, M.J.1    Woods, D.R.2    Tucker, P.K.3    Opp, J.S.4    Bishop, C.E.5
  • 14
    • 33645798670 scopus 로고    scopus 로고
    • Expression analysis of a mouse orthologue of HSFY, a candidate for the azoospermic factor on the human Y chromosome
    • Kinoshita K, Shinka T, Sato Y, Kurahashi H, Kowa H, Chen G, et al. Expression analysis of a mouse orthologue of HSFY, a candidate for the azoospermic factor on the human Y chromosome. J Med Invest. 2006;53:117-22.
    • (2006) J Med Invest. , vol.53 , pp. 117-122
    • Kinoshita, K.1    Shinka, T.2    Sato, Y.3    Kurahashi, H.4    Kowa, H.5    Chen, G.6
  • 15
    • 3142664681 scopus 로고    scopus 로고
    • Molecular characterization of heat shock-like factor encoded on the human Y chromosome, and implications for male infertility
    • Shinka T, Sato Y, Chen G, Naroda T, Kinoshita K, Unemi Y, et al. Molecular characterization of heat shock-like factor encoded on the human Y chromosome, and implications for male infertility. Biol Reprod. 2004;71:297-306.
    • (2004) Biol Reprod. , vol.71 , pp. 297-306
    • Shinka, T.1    Sato, Y.2    Chen, G.3    Naroda, T.4    Kinoshita, K.5    Unemi, Y.6
  • 17
    • 1642475221 scopus 로고    scopus 로고
    • Extensive gene traffic on the mammalian X chromosome
    • Emerson JJ, Kaessmann H, Betran E, Long M. Extensive gene traffic on the mammalian X chromosome. Science. 2004;303:537-40.
    • (2004) Science. , vol.303 , pp. 537-540
    • Emerson, J.J.1    Kaessmann, H.2    Betran, E.3    Long, M.4
  • 19
    • 34250626425 scopus 로고    scopus 로고
    • Meiotic sex chromosome inactivation
    • Turner JM. Meiotic sex chromosome inactivation. Development. 2007;134:1823-31.
    • (2007) Development. , vol.134 , pp. 1823-1831
    • Turner, J.M.1
  • 20
    • 1342308231 scopus 로고    scopus 로고
    • X chromosomes, retrogenes and their role in male reproduction
    • Wang PJ. X chromosomes, retrogenes and their role in male reproduction. Trends Endocrinol Metab. 2004;15:79-83.
    • (2004) Trends Endocrinol Metab. , vol.15 , pp. 79-83
    • Wang, P.J.1
  • 21
    • 78649231644 scopus 로고    scopus 로고
    • Origins, evolution, and phenotypic impact of new genes
    • Kaessmann H. Origins, evolution, and phenotypic impact of new genes. Genome Res. 2010;20:1313-26.
    • (2010) Genome Res. , vol.20 , pp. 1313-1326
    • Kaessmann, H.1
  • 22
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004;32:1792-7.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 24
    • 33747847779 scopus 로고    scopus 로고
    • PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
    • Suyama M, Torrents D, Bork P. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res. 2006;34:W609-12.
    • (2006) Nucleic Acids Res. , vol.34 , pp. W609-W612
    • Suyama, M.1    Torrents, D.2    Bork, P.3
  • 25
    • 33751381461 scopus 로고    scopus 로고
    • TimeTree: a public knowledge-base of divergence times among organisms
    • Hedges SB, Dudley J, Kumar S. TimeTree: a public knowledge-base of divergence times among organisms. Bioinformatics. 2006;22:2971-2.
    • (2006) Bioinformatics. , vol.22 , pp. 2971-2972
    • Hedges, S.B.1    Dudley, J.2    Kumar, S.3
  • 26
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009;10:R25.
    • (2009) Genome Biol. , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 27
    • 0030292382 scopus 로고    scopus 로고
    • The DAZ gene cluster on the human Y chromosome arose from an autosomal gene that was transposed, repeatedly amplified and pruned
    • Saxena R, Brown LG, Hawkins T, Alagappan RK, Skaletsky H, Reeve MP, et al. The DAZ gene cluster on the human Y chromosome arose from an autosomal gene that was transposed, repeatedly amplified and pruned. Nat Genet. 1996;14:292-9.
    • (1996) Nat Genet. , vol.14 , pp. 292-299
    • Saxena, R.1    Brown, L.G.2    Hawkins, T.3    Alagappan, R.K.4    Skaletsky, H.5    Reeve, M.P.6
  • 28
    • 84939136145 scopus 로고    scopus 로고
    • Beta Violin Plot. http://pagelab.wi.mit.edu/software/ .
    • Beta Violin Plot
  • 29
    • 84939160522 scopus 로고    scopus 로고
    • USCS Genome Browser. http://genome.ucsc.edu .


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.