메뉴 건너뛰기




Volumn 9, Issue 8, 2014, Pages

Positive feedback promotes oscillations in negative feedback loops

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CIRCADIAN RHYTHM; DEGRADATION; MICHAELIS MENTEN KINETICS; MOLECULAR CLOCK; NEGATIVE FEEDBACK; OSCILLATION; POSITIVE FEEDBACK; ANIMAL; BIOLOGICAL MODEL; BIOLOGICAL RHYTHM; COMPUTER SIMULATION; FEEDBACK SYSTEM; HUMAN; SYSTEMS BIOLOGY;

EID: 84938958019     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0104761     Document Type: Article
Times cited : (77)

References (45)
  • 1
    • 0029267491 scopus 로고
    • Dynamical behaviour of biological regulatory networks-I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state
    • Thomas R, Thieffry D, Kaufman M (1995) Dynamical behaviour of biological regulatory networks-I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state. Bulletin of Mathematical Biology 57: 247-276.
    • (1995) Bulletin of Mathematical Biology , vol.57 , pp. 247-276
    • Thomas, R.1    Thieffry, D.2    Kaufman, M.3
  • 2
    • 34249079154 scopus 로고    scopus 로고
    • Network motifs: Theory and experimental approaches
    • Alon U (2007) Network motifs: theory and experimental approaches. Nature Reviews Genetics 8: 450-461.
    • (2007) Nature Reviews Genetics , vol.8 , pp. 450-461
    • Alon, U.1
  • 5
    • 0013823048 scopus 로고
    • Oscillatory behavior in enzymatic control processes
    • Goodwin BC (1965) Oscillatory behavior in enzymatic control processes. Advances in Enzyme Regulation 3: 425-437.
    • (1965) Advances in Enzyme Regulation , vol.3 , pp. 425-437
    • Goodwin, B.C.1
  • 6
    • 0014319313 scopus 로고
    • Mathematics of cellular control processes I. Negative feedback to one gene
    • Griffith J (1968) Mathematics of cellular control processes I. Negative feedback to one gene. Journal of Theoretical Biology 20: 202-208.
    • (1968) Journal of Theoretical Biology , vol.20 , pp. 202-208
    • Griffith, J.1
  • 7
    • 0029991824 scopus 로고    scopus 로고
    • The temperature-compensated Goodwin model simulates many circadian clock properties
    • DOI 10.1006/jtbi.1996.0067
    • Ruoff P, Rensing L (1996) The Temperature-Compensated Goodwin Model Simulates Many Circadian Clock Properties. Journal of Theoretical Biology 179: 275-285. (Pubitemid 26166870)
    • (1996) Journal of Theoretical Biology , vol.179 , Issue.4 , pp. 275-285
    • Ruoff, P.1    Rensing, L.2
  • 8
    • 0041677612 scopus 로고    scopus 로고
    • Autoinhibition with Transcriptional Delay: A Simple Mechanism for the Zebrafish Somitogenesis Oscillator
    • Lewis J (2003) Autoinhibition with Transcriptional Delay: A Simple Mechanism for the Zebrafish Somitogenesis Oscillator. Current Biology 13: 1398-1408.
    • (2003) Current Biology , vol.13 , pp. 1398-1408
    • Lewis, J.1
  • 10
    • 84890678355 scopus 로고
    • A Model Based on Receptor Desensitization for Cyclic AMP Signaling in Dictyostelium Cells
    • Martiel JL, Goldbeter A (1987) A Model Based on Receptor Desensitization for Cyclic AMP Signaling in Dictyostelium Cells. Biophysical Journal 52: 807-828.
    • (1987) Biophysical Journal , vol.52 , pp. 807-828
    • Martiel, J.L.1    Goldbeter, A.2
  • 14
    • 0015419716 scopus 로고
    • Dissipative structures for an allosteric model: Application to glycolytic oscillations
    • Goldbeter A, Lefever R (1972) Dissipative structures for an allosteric model: Application to glycolytic oscillations. Biophysical Journal 12: 1302-1315.
    • (1972) Biophysical Journal , vol.12 , pp. 1302-1315
    • Goldbeter, A.1    Lefever, R.2
  • 15
    • 0034092437 scopus 로고    scopus 로고
    • How yeast cells synchronize their glycolytic oscillations: A perturbation analytic treatment
    • Bier M, Bakker BM, Westerhoff HV (2000) How yeast cells synchronize their glycolytic oscillations: a perturbation analytic treatment. Biophysical Journal 78: 1087-1093. (Pubitemid 30141538)
    • (2000) Biophysical Journal , vol.78 , Issue.3 , pp. 1087-1093
    • Bier, M.1    Bakker, B.M.2    Westerhoff, H.V.3
  • 16
    • 46849090495 scopus 로고    scopus 로고
    • Robust, Tunable Biological Oscillations from Interlinked Positive and Negative Feedback Loops
    • Tsai TYC, Choi YS, Ma W, Pomerening JR, Tang C, et al. (2008) Robust, Tunable Biological Oscillations from Interlinked Positive and Negative Feedback Loops. Science 321: 126-129.
    • (2008) Science , vol.321 , pp. 126-129
    • Tsai, T.Y.C.1    Choi, Y.S.2    Ma, W.3    Pomerening, J.R.4    Tang, C.5
  • 17
    • 79951552857 scopus 로고
    • Die Kinetik der Invertinwirkung
    • Michaelis L, Menten ML (1913) Die Kinetik der Invertinwirkung. Biochem Z 49: 352.
    • (1913) Biochem Z , vol.49 , pp. 352
    • Michaelis, L.1    Menten, M.L.2
  • 18
    • 0019974626 scopus 로고
    • Role of feedback inhibition in stabilizing the classical operon
    • DOI 10.1016/0022-5193(82)90098-4
    • Bliss RD, Painter PR, Marr AG (1982) Role of feedback inhibition in stabilizing the classical operon. Journal of Theoretical Biology 97: 177-193. (Pubitemid 12023228)
    • (1982) Journal of Theoretical Biology , vol.97 , Issue.2 , pp. 177-193
    • Bliss, R.D.1    Painter, P.R.2    Marr, A.G.3
  • 19
    • 0018892665 scopus 로고
    • Hemoglobin and the origins of the concept of allosterism
    • Edsall JT (1980) Hemoglobin and the origins of the concept of allosterism. Federation Proceedings 39: 226-235.
    • (1980) Federation Proceedings , vol.39 , pp. 226-235
    • Edsall, J.T.1
  • 20
    • 84935023004 scopus 로고
    • Ueber einen in biologischer Beziehung wichtigen Einfluss, den die Kohlensäurespannung des Blutes auf dessen Sauerstoffbindung übt 1
    • Bohr C, Hasselbalch K, Krogh A (1904) Ueber einen in biologischer Beziehung wichtigen Einfluss, den die Kohlensäurespannung des Blutes auf dessen Sauerstoffbindung übt 1. Skandinavisches Archiv für Physiologie 16: 402-412.
    • (1904) Skandinavisches Archiv für Physiologie , vol.16 , pp. 402-412
    • Bohr, C.1    Hasselbalch, K.2    Krogh, A.3
  • 21
    • 0025111626 scopus 로고
    • Allosteric regulation, cooperativity, and biochemical oscillations
    • DOI 10.1016/0301-4622(90)88033-O
    • Goldbeter A, Dupont G (1990) Allosteric regulation, cooperativity, and biochemical oscillations. Biophysical Chemistry 37: 341-353. (Pubitemid 20287802)
    • (1990) Biophysical Chemistry , vol.37 , Issue.1-3 , pp. 341-353
    • Goldbeter, A.1    Dupont, G.2
  • 23
    • 36248946925 scopus 로고    scopus 로고
    • Ultrasensitization: Switch-Like Regulation of Cellular Signaling by Transcriptional Induction
    • Legewie S, Blüthgen N, Schäfer R, Herzel H (2005) Ultrasensitization: Switch-Like Regulation of Cellular Signaling by Transcriptional Induction. PLoS Comput Biol 1: e54.
    • (2005) PLoS Comput Biol , vol.1
    • Legewie, S.1    Blüthgen, N.2    Schäfer, R.3    Herzel, H.4
  • 24
    • 67149138163 scopus 로고    scopus 로고
    • Protein sequestration generates a flexible ultrasensitive response in a genetic network
    • Buchler NE, Cross FR (2009) Protein sequestration generates a flexible ultrasensitive response in a genetic network. Molecular Systems Biology 5.
    • (2009) Molecular Systems Biology , vol.5
    • Buchler, N.E.1    Cross, F.R.2
  • 26
    • 66249102308 scopus 로고    scopus 로고
    • Multisite protein phosphorylation from molecular mechanisms to kinetic models
    • Salazar C, Höfer T (2009) Multisite protein phosphorylation from molecular mechanisms to kinetic models. FEBS Journal 276: 31773198.
    • (2009) FEBS Journal , vol.276 , pp. 31773198
    • Salazar, C.1    Höfer, T.2
  • 29
    • 0007231758 scopus 로고
    • The secant condition for instability in biochemical feedback control-II. Models with upper Hessenberg Jacobian matrices
    • Thron C (1991) The secant condition for instability in biochemical feedback control-II. Models with upper Hessenberg Jacobian matrices. Bulletin of Mathematical Biology 53: 403-424.
    • (1991) Bulletin of Mathematical Biology , vol.53 , pp. 403-424
    • Thron, C.1
  • 30
    • 18844433123 scopus 로고    scopus 로고
    • Analysing the robustness of cellular rhythms
    • DOI 10.1049/sb:20045035
    • Wolf J, Becker-Weimann S, Heinrich R (2005) Analysing the robustness of cellular rhythms. Systems Biology, IEE Proceedings 2: 35-41. (Pubitemid 40932496)
    • (2005) Systems Biology , vol.2 , Issue.1 , pp. 35-41
    • Wolf, J.X.1    Becker-Weimann, S.2    Heinrich, R.3
  • 31
    • 0002275384 scopus 로고
    • The dynamics of feedback control circuits in biochemical pathways
    • Tyson JJ, Othmer HG (1978) The dynamics of feedback control circuits in biochemical pathways. Prog Theor Biol 5: 62.
    • (1978) Prog Theor Biol , vol.5 , pp. 62
    • Tyson, J.J.1    Othmer, H.G.2
  • 32
    • 0034019315 scopus 로고    scopus 로고
    • Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades
    • Kholodenko BN (2000) Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades. European Journal of Biochemistry 267: 1583-1588.
    • (2000) European Journal of Biochemistry , vol.267 , pp. 1583-1588
    • Kholodenko, B.N.1
  • 33
    • 0032496358 scopus 로고    scopus 로고
    • The biochemical basis of an all-or-none cell fate switch in xenopus oocytes
    • Ferrell JE, Machleder EM (1998) The biochemical basis of an all-or-none cell fate switch in xenopus oocytes. Science 280: 895-898.
    • (1998) Science , vol.280 , pp. 895-898
    • Ferrell, J.E.1    Machleder, E.M.2
  • 34
    • 0037194790 scopus 로고    scopus 로고
    • Coordination of circadian timing in mammals
    • DOI 10.1038/nature00965
    • Reppert SM, Weaver DR (2002) Coordination of circadian timing in mammals. Nature 418: 935-941. (Pubitemid 34976023)
    • (2002) Nature , vol.418 , Issue.6901 , pp. 935-941
    • Reppert, S.M.1    Weaver, D.R.2
  • 35
    • 0031990984 scopus 로고    scopus 로고
    • A Model for Circadian Rhythms in Drosophila Incorporating the Formation of a Complex between the PER and TIM Proteins
    • Leloup JC, Goldbeter A (1998) A Model for Circadian Rhythms in Drosophila Incorporating the Formation of a Complex between the PER and TIM Proteins. Journal of Biological Rhythms 13: 70-87.
    • (1998) Journal of Biological Rhythms , vol.13 , pp. 70-87
    • Leloup, J.C.1    Goldbeter, A.2
  • 36
    • 12244277104 scopus 로고    scopus 로고
    • Modeling feedback loops of the mammalian circadian oscillator
    • DOI 10.1529/biophysj.104.040824
    • Becker-Weimann S, Wolf J, Herzel H, Kramer A (2004) Modeling Feedback Loops of the Mammalian Circadian Oscillator. Biophysical Journal 87: 3023-3034. (Pubitemid 40468562)
    • (2004) Biophysical Journal , vol.87 , Issue.5 , pp. 3023-3034
    • Becker-Weimann, S.1    Wolf, J.2    Herzel, H.3    Kramer, A.4
  • 37
    • 84880966843 scopus 로고    scopus 로고
    • The Goodwin Model: Behind the Hill Function
    • Gonze D, Abou-Jaoudé W (2013) The Goodwin Model: Behind the Hill Function. PLoS ONE 8: e69573.
    • (2013) PLoS ONE , vol.8
    • Gonze, D.1    Abou-Jaoudé, W.2
  • 38
    • 84877625752 scopus 로고    scopus 로고
    • A mechanism for robust circadian timekeeping via stoichiometric balance
    • Kim JK, Forger DB (2012) A mechanism for robust circadian timekeeping via stoichiometric balance. Molecular Systems Biology 8.
    • (2012) Molecular Systems Biology , vol.8
    • Kim, J.K.1    Forger, D.B.2
  • 40
    • 34247622366 scopus 로고    scopus 로고
    • Synchronization-Induced Rhythmicity of Circadian Oscillators in the Suprachiasmatic Nucleus
    • Bernard S, Gonze D, Čajavec B, Herzel H, Kramer A (2007) Synchronization-Induced Rhythmicity of Circadian Oscillators in the Suprachiasmatic Nucleus. PLoS Comput Biol 3: e68.
    • (2007) PLoS Comput Biol , vol.3
    • Bernard, S.1    Gonze, D.2    Čajavec, B.3    Herzel, H.4    Kramer, A.5
  • 41
    • 0032758081 scopus 로고    scopus 로고
    • A simple model of circadian rhythms based on dimerization and proteolysis of PER and TIM
    • Tyson JJ, Hong CI, Thron CD, Novak B (1999) A Simple Model of Circadian Rhythms Based on Dimerization and Proteolysis of PER and TIM. Biophysical Journal 77: 2411-2417. (Pubitemid 29519489)
    • (1999) Biophysical Journal , vol.77 , Issue.5 , pp. 2411-2417
    • Tyson, J.J.1    Hong, C.I.2    Thron, C.D.3    Novak, B.4
  • 42
    • 0036302129 scopus 로고    scopus 로고
    • Comparative study of circadian clock models, in search of processes promoting oscillation
    • DOI 10.1006/jtbi.2002.2546
    • Kurosawa G, Mochizuki A, Iwasa Y (2002) Comparative Study of Circadian Clock Models, in Search of Processes Promoting Oscillation. Journal of Theoretical Biology 216: 193-208. (Pubitemid 34748048)
    • (2002) Journal of Theoretical Biology , vol.216 , Issue.2 , pp. 193-208
    • Kurosawa, G.1    Mochizuki, A.2    Iwasa, Y.3
  • 43
    • 84868384122 scopus 로고    scopus 로고
    • The Interplay of cis-Regulatory Elements Rules Circadian Rhythms in Mouse Liver
    • Korenčič A, Bordyugov G, Košir R, Rozman D, Goličnik M, et al. (2012) The Interplay of cis-Regulatory Elements Rules Circadian Rhythms in Mouse Liver. PLoS ONE 7: e46835.
    • (2012) PLoS ONE , vol.7
    • Korenčič, A.1    Bordyugov, G.2    Košir, R.3    Rozman, D.4    Goličnik, M.5
  • 44
    • 0141843566 scopus 로고    scopus 로고
    • Saturation of enzyme kinetics in circadian clock models
    • DOI 10.1177/0748730402238239
    • Kurosawa G, Iwasa Y (2002) Saturation of Enzyme Kinetics in Circadian Clock Models. Journal of Biological Rhythms 17: 568-577. (Pubitemid 37187319)
    • (2002) Journal of Biological Rhythms , vol.17 , Issue.6 , pp. 568-577
    • Kurosawa, G.1    Iwasa, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.