-
1
-
-
84887161037
-
Control of transcriptional elongation
-
Kwak H, Lis JT (2013) Control of transcriptional elongation. Annu Rev Genet 47: 483-508.
-
(2013)
Annu Rev Genet
, vol.47
, pp. 483-508
-
-
Kwak, H.1
Lis, J.T.2
-
2
-
-
79954597274
-
Termination and antitermination: RNA polymerase runs a stop sign
-
Santangelo TJ, Artsimovitch I (2011) Termination and antitermination: RNA polymerase runs a stop sign. Nat Rev Microbiol 9(5): 319-329.
-
(2011)
Nat Rev Microbiol
, vol.9
, Issue.5
, pp. 319-329
-
-
Santangelo, T.J.1
Artsimovitch, I.2
-
3
-
-
0030576532
-
Function of E. Coli RNA polymerase sigma factor sigma 70 in promoter-proximal pausing
-
Ring BZ, Yarnell WS, Roberts JW (1996) Function of E. coli RNA polymerase sigma factor sigma 70 in promoter-proximal pausing. Cell 86(3): 485-493.
-
(1996)
Cell
, vol.86
, Issue.3
, pp. 485-493
-
-
Ring, B.Z.1
Yarnell, W.S.2
Roberts, J.W.3
-
4
-
-
0034691146
-
Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals
-
Artsimovitch I, Landick R (2000) Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals. Proc Natl Acad Sci USA 97(13): 7090-7095.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, Issue.13
, pp. 7090-7095
-
-
Artsimovitch, I.1
Landick, R.2
-
5
-
-
0027374650
-
Dissection of the his leader pause site by base substitution reveals a multipartite signal that includes a pause RNA hairpin
-
Chan CL, Landick R (1993) Dissection of the his leader pause site by base substitution reveals a multipartite signal that includes a pause RNA hairpin. J Mol Biol 233(1): 25-42.
-
(1993)
J Mol Biol
, vol.233
, Issue.1
, pp. 25-42
-
-
Chan, C.L.1
Landick, R.2
-
6
-
-
84856437051
-
Factor-independent transcription pausing caused by recognition of the RNA-DNA hybrid sequence
-
Bochkareva A, Yuzenkova Y, Tadigotla VR, Zenkin N (2012) Factor-independent transcription pausing caused by recognition of the RNA-DNA hybrid sequence. EMBO J 31(3): 630-639.
-
(2012)
EMBO J
, vol.31
, Issue.3
, pp. 630-639
-
-
Bochkareva, A.1
Yuzenkova, Y.2
Tadigotla, V.R.3
Zenkin, N.4
-
7
-
-
0032466791
-
Antitermination by bacteriophage lambda Q protein
-
Roberts JW, et al. (1998) Antitermination by bacteriophage lambda Q protein. Cold Spring Harb Symp Quant Biol 63: 319-325.
-
(1998)
Cold Spring Harb Symp Quant Biol
, vol.63
, pp. 319-325
-
-
Roberts, J.W.1
-
8
-
-
33751212468
-
Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism
-
Kapanidis AN, et al. (2006) Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism. Science 314(5802): 1144-1147.
-
(2006)
Science
, vol.314
, Issue.5802
, pp. 1144-1147
-
-
Kapanidis, A.N.1
-
9
-
-
33751218319
-
Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching
-
Revyakin A, Liu C, Ebright RH, Strick TR (2006) Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching. Science 314(5802): 1139-1143.
-
(2006)
Science
, vol.314
, Issue.5802
, pp. 1139-1143
-
-
Revyakin, A.1
Liu, C.2
Ebright, R.H.3
Strick, T.R.4
-
10
-
-
0034507953
-
Function of transcription cleavage factors GreA and GreB at a regulatory pause site
-
Marr MT, Roberts JW (2000) Function of transcription cleavage factors GreA and GreB at a regulatory pause site. Mol Cell 6(6): 1275-1285.
-
(2000)
Mol Cell
, vol.6
, Issue.6
, pp. 1275-1285
-
-
Marr, M.T.1
Roberts, J.W.2
-
11
-
-
84899839848
-
Regulation of promoter-proximal transcription elongation: Enhanced DNA scrunching drives ?Q antiterminator-dependent escape from a s70-dependent pause
-
Strobel EJ, Roberts JW (2014) Regulation of promoter-proximal transcription elongation: Enhanced DNA scrunching drives ?Q antiterminator-dependent escape from a s70-dependent pause. Nucleic Acids Res 42(8): 5097-5108.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.8
, pp. 5097-5108
-
-
Strobel, E.J.1
Roberts, J.W.2
-
12
-
-
0037073077
-
Promoter clearance and escape in prokaryotes
-
Hsu LM (2002) Promoter clearance and escape in prokaryotes. Biochim Biophys Acta 1577(2): 191-207.
-
(2002)
Biochim Biophys Acta
, vol.1577
, Issue.2
, pp. 191-207
-
-
Hsu, L.M.1
-
13
-
-
0027536870
-
Transcript cleavage factors from E. Coli
-
Borukhov S, Sagitov V, Goldfarb A (1993) Transcript cleavage factors from E. coli. Cell 72(3): 459-466.
-
(1993)
Cell
, vol.72
, Issue.3
, pp. 459-466
-
-
Borukhov, S.1
Sagitov, V.2
Goldfarb, A.3
-
14
-
-
77958578564
-
A backtrack-inducing sequence is an essential component of Escherichia coli s70-dependent promoter-proximal pausing
-
Perdue SA, Roberts JW (2010) A backtrack-inducing sequence is an essential component of Escherichia coli s70-dependent promoter-proximal pausing. Mol Microbiol 78(3): 636-650.
-
(2010)
Mol Microbiol
, vol.78
, Issue.3
, pp. 636-650
-
-
Perdue, S.A.1
Roberts, J.W.2
-
15
-
-
33744981369
-
Sequence-resolved detection of pausing by single RNA polymerase molecules
-
Herbert KM, et al. (2006) Sequence-resolved detection of pausing by single RNA polymerase molecules. Cell 125(6): 1083-1094.
-
(2006)
Cell
, vol.125
, Issue.6
, pp. 1083-1094
-
-
Herbert, K.M.1
-
16
-
-
80051538984
-
RNA transcript 3'-proximal sequence affects translocation bias of RNA polymerase
-
Hein PP, Palangat M, Landick R (2011) RNA transcript 3'-proximal sequence affects translocation bias of RNA polymerase. Biochemistry 50(32): 7002-7014.
-
(2011)
Biochemistry
, vol.50
, Issue.32
, pp. 7002-7014
-
-
Hein, P.P.1
Palangat, M.2
Landick, R.3
-
17
-
-
84901676291
-
A pause sequence enriched at translation start sites drives transcription dynamics in vivo
-
Larson MH, et al. (2014) A pause sequence enriched at translation start sites drives transcription dynamics in vivo. Science 344(6187): 1042-1047.
-
(2014)
Science
, vol.344
, Issue.6187
, pp. 1042-1047
-
-
Larson, M.H.1
-
18
-
-
84902589951
-
Interactions between RNA polymerase and the "core recognition element" counteract pausing
-
Vvedenskaya IO, et al. (2014) Interactions between RNA polymerase and the "core recognition element" counteract pausing. Science 344(6189): 1285-1289.
-
(2014)
Science
, vol.344
, Issue.6189
, pp. 1285-1289
-
-
Vvedenskaya, I.O.1
-
20
-
-
34547204502
-
A central role of the RNA polymerase trigger loop in active-site rearrangement during transcriptional pausing
-
Toulokhonov I, Zhang J, Palangat M, Landick R (2007) A central role of the RNA polymerase trigger loop in active-site rearrangement during transcriptional pausing. Mol Cell 27(3): 406-419.
-
(2007)
Mol Cell
, vol.27
, Issue.3
, pp. 406-419
-
-
Toulokhonov, I.1
Zhang, J.2
Palangat, M.3
Landick, R.4
-
21
-
-
84873408886
-
Intrinsic translocation barrier as an initial step in pausing by RNA polymerase II
-
Imashimizu M, et al. (2013) Intrinsic translocation barrier as an initial step in pausing by RNA polymerase II. J Mol Biol 425(4): 697-712.
-
(2013)
J Mol Biol
, vol.425
, Issue.4
, pp. 697-712
-
-
Imashimizu, M.1
-
22
-
-
84873323216
-
Structural basis of transcriptional pausing in bacteria
-
Weixlbaumer A, Leon K, Landick R, Darst SA (2013) Structural basis of transcriptional pausing in bacteria. Cell 152(3): 431-441.
-
(2013)
Cell
, vol.152
, Issue.3
, pp. 431-441
-
-
Weixlbaumer, A.1
Leon, K.2
Landick, R.3
Darst, S.A.4
-
23
-
-
0026663397
-
The phage lambda gene Q transcription antiterminator binds DNA in the late gene promoter as it modifies RNA polymerase
-
Yarnell WS, Roberts JW (1992) The phage lambda gene Q transcription antiterminator binds DNA in the late gene promoter as it modifies RNA polymerase. Cell 69(7): 1181-1189.
-
(1992)
Cell
, vol.69
, Issue.7
, pp. 1181-1189
-
-
Yarnell, W.S.1
Roberts, J.W.2
-
24
-
-
0027978530
-
Function of a nontranscribed DNA strand site in transcription elongation
-
Ring BZ, Roberts JW (1994) Function of a nontranscribed DNA strand site in transcription elongation. Cell 78(2): 317-324.
-
(1994)
Cell
, vol.78
, Issue.2
, pp. 317-324
-
-
Ring, B.Z.1
Roberts, J.W.2
-
25
-
-
33744981130
-
RRNA promoter regulation by nonoptimal binding of sigma region 1.2: An additional recognition element for RNA polymerase
-
Haugen SP, et al. (2006) rRNA promoter regulation by nonoptimal binding of sigma region 1.2: An additional recognition element for RNA polymerase. Cell 125(6): 1069-1082.
-
(2006)
Cell
, vol.125
, Issue.6
, pp. 1069-1082
-
-
Haugen, S.P.1
-
26
-
-
33745485665
-
A basal promoter element recognized by free RNA polymerase sigma subunit determines promoter recognition by RNA polymerase holoenzyme
-
Feklistov A, et al. (2006) A basal promoter element recognized by free RNA polymerase sigma subunit determines promoter recognition by RNA polymerase holoenzyme. Mol Cell 23(1): 97-107.
-
(2006)
Mol Cell
, vol.23
, Issue.1
, pp. 97-107
-
-
Feklistov, A.1
-
27
-
-
0029834733
-
Quantitative analysis of transcriptional pausing by Escherichia coli RNA polymerase: His leader pause site as paradigm
-
Landick R, Wang D, Chan CL (1996) Quantitative analysis of transcriptional pausing by Escherichia coli RNA polymerase: His leader pause site as paradigm. Methods Enzymol 274: 334-353.
-
(1996)
Methods Enzymol
, vol.274
, pp. 334-353
-
-
Landick, R.1
Wang, D.2
Chan, C.L.3
-
28
-
-
78650862144
-
Initial transcribed region sequences influence the composition and functional properties of the bacterial elongation complex
-
Deighan P, Pukhrambam C, Nickels BE, Hochschild A (2011) Initial transcribed region sequences influence the composition and functional properties of the bacterial elongation complex. Genes Dev 25(1): 77-88.
-
(2011)
Genes Dev
, vol.25
, Issue.1
, pp. 77-88
-
-
Deighan, P.1
Pukhrambam, C.2
Nickels, B.E.3
Hochschild, A.4
-
29
-
-
0022389446
-
Phage lambda gene Q antiterminator recognizes RNA polymerase near the promoter and accelerates it through a pause site
-
Grayhack EJ, Yang XJ, Lau LF, Roberts JW (1985) Phage lambda gene Q antiterminator recognizes RNA polymerase near the promoter and accelerates it through a pause site. Cell 42(1): 259-269.
-
(1985)
Cell
, vol.42
, Issue.1
, pp. 259-269
-
-
Grayhack, E.J.1
Yang, X.J.2
Lau, L.F.3
Roberts, J.W.4
-
30
-
-
0036753065
-
The s70 subunit of RNA polymerase is contacted by the ?Q antiterminator during early elongation
-
Nickels BE, Roberts CW, Sun H, Roberts JW, Hochschild A (2002) The s70 subunit of RNA polymerase is contacted by the ?Q antiterminator during early elongation. Mol Cell 10(3): 611-622.
-
(2002)
Mol Cell
, vol.10
, Issue.3
, pp. 611-622
-
-
Nickels, B.E.1
Roberts, C.W.2
Sun, H.3
Roberts, J.W.4
Hochschild, A.5
-
31
-
-
0032532456
-
A surface of Escherichia coli sigma 70 required for promoter function and antitermination by phage lambda Q protein
-
Ko DC, Marr MT, Guo J, Roberts JW (1998) A surface of Escherichia coli sigma 70 required for promoter function and antitermination by phage lambda Q protein. Genes Dev 12(20): 3276-3285.
-
(1998)
Genes Dev
, vol.12
, Issue.20
, pp. 3276-3285
-
-
Ko, D.C.1
Marr, M.T.2
Guo, J.3
Roberts, J.W.4
-
32
-
-
0030915128
-
Promoter recognition as measured by binding of polymerase to nontemplate strand oligonucleotide
-
Marr MT, Roberts JW (1997) Promoter recognition as measured by binding of polymerase to nontemplate strand oligonucleotide. Science 276(5316): 1258-1260.
-
(1997)
Science
, vol.276
, Issue.5316
, pp. 1258-1260
-
-
Marr, M.T.1
Roberts, J.W.2
-
33
-
-
34147155174
-
Structural basis for converting a general transcription factor into an operon-specific virulence regulator
-
Belogurov GA, et al. (2007) Structural basis for converting a general transcription factor into an operon-specific virulence regulator. Mol Cell 26(1): 117-129.
-
(2007)
Mol Cell
, vol.26
, Issue.1
, pp. 117-129
-
-
Belogurov, G.A.1
-
34
-
-
33646887382
-
Cloning, expression, purification, crystallization and initial crystallographic analysis of transcription elongation factors GreB from Escherichia coli and Gfh1 from Thermus thermophilus
-
Perederina AA, et al. (2006) Cloning, expression, purification, crystallization and initial crystallographic analysis of transcription elongation factors GreB from Escherichia coli and Gfh1 from Thermus thermophilus. Acta Crystallogr Sect F Struct Biol Cryst Commun 62(Pt 1): 44-46.
-
(2006)
Acta Crystallogr Sect F Struct Biol Cryst Commun
, vol.62
, pp. 44-46
-
-
Perederina, A.A.1
-
35
-
-
0021765665
-
Amplification and isolation of Escherichia coli nusA protein and studies of its effects on in vitro RNA chain elongation
-
Schmidt MC, Chamberlin MJ (1984) Amplification and isolation of Escherichia coli nusA protein and studies of its effects on in vitro RNA chain elongation. Biochemistry 23(2): 197-203.
-
(1984)
Biochemistry
, vol.23
, Issue.2
, pp. 197-203
-
-
Schmidt, M.C.1
Chamberlin, M.J.2
|