-
1
-
-
78650578953
-
PlutoF-a web-based workbench for ecological and taxonomic research, with an online implementation for fungal ITS sequences
-
Abarenkov K, Tedersoo L, Nilsson RH, Vellak K, Saar I, Veldre V, Parmasto E, Prous M, Aan A, Ots M. 2010. PlutoF-a web-based workbench for ecological and taxonomic research, with an online implementation for fungal ITS sequences. Evol Bioinform Online 6:189.
-
(2010)
Evol Bioinform Online
, vol.6
, pp. 189
-
-
Abarenkov, K.1
Tedersoo, L.2
Nilsson, R.H.3
Vellak, K.4
Saar, I.5
Veldre, V.6
Parmasto, E.7
Prous, M.8
Aan, A.9
Ots, M.10
-
2
-
-
79551619570
-
Light converts endosymbiotic fungus to pathogen, influencing seedling survival and niche-space filling of a common tropical tree, Iriartea deltoidea
-
Alvarez-Loayza P, White Jr JF, Torres MS, Balslev H, Kristiansen T, Svenning J-C, Gil N. 2011. Light converts endosymbiotic fungus to pathogen, influencing seedling survival and niche-space filling of a common tropical tree, Iriartea deltoidea. PloS one 6:e16386, doi:10.1371/journal.pone.0016386
-
(2011)
PloS one
, vol.6
-
-
Alvarez-Loayza, P.1
White Jr, J.F.2
Torres, M.S.3
Balslev, H.4
Kristiansen, T.5
Svenning, J.-C.6
Gil, N.7
-
3
-
-
63449095822
-
Endophytic fungi: hidden components of tropical community ecology
-
Carson W, Schnitzer S, eds. Chichester, UK: Wiley-Blackwell
-
Arnold AE. 2008. Endophytic fungi: hidden components of tropical community ecology. In: Carson W, Schnitzer S, eds. Tropical forest community ecology. Chichester, UK: Wiley-Blackwell. p 254-271.
-
(2008)
Tropical forest community ecology
, pp. 254-271
-
-
Arnold, A.E.1
-
4
-
-
34547197374
-
Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR
-
Arnold AE, Henk DA, Eells RL, Lutzoni F, Vilgalys R. 2007. Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR. Mycologia 99:185-206, doi:10.3852/mycologia.99.2.185
-
(2007)
Mycologia
, vol.99
, pp. 185-206
-
-
Arnold, A.E.1
Henk, D.A.2
Eells, R.L.3
Lutzoni, F.4
Vilgalys, R.5
-
5
-
-
0042266786
-
Canopy cover and leaf age affect colonization by tropical fungal endophytes: ecological pattern and process in Theobroma cacao (Malvaceae)
-
Arnold AE, Herre EA. 2003. Canopy cover and leaf age affect colonization by tropical fungal endophytes: ecological pattern and process in Theobroma cacao (Malvaceae). Mycologia 95:388-398, doi:10.2307/3761880
-
(2003)
Mycologia
, vol.95
, pp. 388-398
-
-
Arnold, A.E.1
Herre, E.A.2
-
6
-
-
34247175933
-
Diversity and host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots?
-
Arnold AE, Lutzoni F. 2007. Diversity and host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots? Ecology 88:541-549, doi:10.1890/05-1459
-
(2007)
Ecology
, vol.88
, pp. 541-549
-
-
Arnold, A.E.1
Lutzoni, F.2
-
7
-
-
0033879279
-
Are tropical fungal endophytes hyperdiverse?
-
Arnold AE, Maynard Z, Gilbert G, Coley P, Kursar T. 2000. Are tropical fungal endophytes hyperdiverse? Ecol Lett 3: 267-274, doi:10.1046/j.1461-0248.2000.00159.x
-
(2000)
Ecol Lett
, vol.3
, pp. 267-274
-
-
Arnold, A.E.1
Maynard, Z.2
Gilbert, G.3
Coley, P.4
Kursar, T.5
-
8
-
-
0346103667
-
Fungal endophytes limit pathogen damage in a tropical tree
-
Arnold AE, Mejía LC, Kyllo D, Rojas EI, Maynard Z, Robbins N, Herre EA. 2003. Fungal endophytes limit pathogen damage in a tropical tree. Proc Natl Acad Sci USA 100: 5649-15654, doi:10.1073/pnas.2533483100
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 5649-15654
-
-
Arnold, A.E.1
Mejía, L.C.2
Kyllo, D.3
Rojas, E.I.4
Maynard, Z.5
Robbins, N.6
Herre, E.A.7
-
9
-
-
0031870918
-
Distribution and dispersal of Xylaria endophytes in two tree species in Puerto Rico
-
Bayman P, Angulo-Sandoval P, Báez-ortiz Z, Lodge DJ. 1998. Distribution and dispersal of Xylaria endophytes in two tree species in Puerto Rico. Mycol Res 102:944-948, doi:10.1017/S095375629700590X
-
(1998)
Mycol Res
, vol.102
, pp. 944-948
-
-
Bayman, P.1
Angulo-Sandoval, P.2
Báez-ortiz, Z.3
Lodge, D.J.4
-
10
-
-
84892380142
-
Phylogenetic and phylogenomic overview of the Polyporales
-
Binder M, Justo A, Riley R, Salamov A, Lopez-Giraldez F, Sjökvist E, Copeland A, Foster B, Sun H, Larsson E. 2013. Phylogenetic and phylogenomic overview of the Polyporales. Mycologia 10:1350-1373, doi:10.3852/13-003
-
(2013)
Mycologia
, vol.10
, pp. 1350-1373
-
-
Binder, M.1
Justo, A.2
Riley, R.3
Salamov, A.4
Lopez-Giraldez, F.5
Sjökvist, E.6
Copeland, A.7
Foster, B.8
Sun, H.9
Larsson, E.10
-
11
-
-
0028589811
-
Latent decay fungi: the hidden foe?
-
Boddy L. 1994. Latent decay fungi: the hidden foe? Arboric J 18:113-135, doi:10.1080/03071375.1994.9747007
-
(1994)
Arboric J
, vol.18
, pp. 113-135
-
-
Boddy, L.1
-
12
-
-
78650237541
-
Linking ex planta fungi with their endophytic stages: Perisporiopsis, a common leaf litter and soil fungus, is a frequent endophyte of Hevea spp. and other plants
-
Chaverri P, Gazis RO. 2011. Linking ex planta fungi with their endophytic stages: Perisporiopsis, a common leaf litter and soil fungus, is a frequent endophyte of Hevea spp. and other plants. Fungal Ecol 4:94-102, doi:10.1016/j.funeco.2010.09.003
-
(2011)
Fungal Ecol
, vol.4
, pp. 94-102
-
-
Chaverri, P.1
Gazis, R.O.2
-
14
-
-
7544236217
-
Interpolating, extrapolating and comparing incidence-based species accumulation curves
-
Colwell RK, Mao CX, Chang J. 2004. Interpolating, extrapolating and comparing incidence-based species accumulation curves. Ecology 85:2717-2727, doi:10.1890/03-0557
-
(2004)
Ecology
, vol.85
, pp. 2717-2727
-
-
Colwell, R.K.1
Mao, C.X.2
Chang, J.3
-
15
-
-
0012309025
-
-
Chapel Hill: Univ. North Carolina Press
-
Couch JN. 1938. The genus Septobasidium. Chapel Hill: Univ. North Carolina Press. 480 p.
-
(1938)
The genus Septobasidium
, pp. 480
-
-
Couch, J.N.1
-
16
-
-
33750957235
-
Molecular characterization of fungal endophytic morphospecies isolated from stems and pods of Theobroma cacao
-
Crozier J, Thomas S, Aime M, Evans H, Holmes K. 2006. Molecular characterization of fungal endophytic morphospecies isolated from stems and pods of Theobroma cacao. Plant Pathol 55:783-791, doi:10.1111/j.1365-3059.2006.01446.x
-
(2006)
Plant Pathol
, vol.55
, pp. 783-791
-
-
Crozier, J.1
Thomas, S.2
Aime, M.3
Evans, H.4
Holmes, K.5
-
17
-
-
0344531058
-
Endophytic Xylaria (Xylariaceae) among liverworts and angiosperms: phylogenetics, distribution, and symbiosis
-
Davis EC, Franklin JB, Shaw AJ, Vilgalys R. 2003. Endophytic Xylaria (Xylariaceae) among liverworts and angiosperms: phylogenetics, distribution, and symbiosis. Am J Bot 90:1661-1667, doi:10.3732/ajb.90.11.1661
-
(2003)
Am J Bot
, vol.90
, pp. 1661-1667
-
-
Davis, E.C.1
Franklin, J.B.2
Shaw, A.J.3
Vilgalys, R.4
-
18
-
-
84898539587
-
Interannual variation and host affiliations of endophytic fungi associated with ferns at La Selva, Costa Rica
-
Del Olmo-Ruiz M, Arnold AE. 2014. Interannual variation and host affiliations of endophytic fungi associated with ferns at La Selva, Costa Rica. Mycologia 106:8-21, doi:10.3852/13-098
-
(2014)
Mycologia
, vol.106
, pp. 8-21
-
-
Del Olmo-Ruiz, M.1
Arnold, A.E.2
-
19
-
-
79955847502
-
Diversity and significance of fungal endophytes from living stems of naturalized trees from Argentina
-
De Errasti A, Carmarán C, Novas MV. 2010. Diversity and significance of fungal endophytes from living stems of naturalized trees from Argentina. Fungal Divers 41:29-40, doi:10.1007/s13225-009-0012-x
-
(2010)
Fungal Divers
, vol.41
, pp. 29-40
-
-
De Errasti, A.1
Carmarán, C.2
Novas, M.V.3
-
20
-
-
43549084127
-
Basidiomycetous endophytes in New Zealand Aneuraceae (simple thalloid liverworts, Metzgeriidae) and the derived status of the monotypic genus Verdoornia
-
Duckett JG, Ligrone R. 2007. Basidiomycetous endophytes in New Zealand Aneuraceae (simple thalloid liverworts, Metzgeriidae) and the derived status of the monotypic genus Verdoornia. Botany 86:346-358, doi:10.1139/B08-004
-
(2007)
Botany
, vol.86
, pp. 346-358
-
-
Duckett, J.G.1
Ligrone, R.2
-
21
-
-
13244255415
-
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
-
Edgar RC. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC bioinf 5:113, doi:10.1186/1471-2105-5-113
-
(2004)
BMC bioinf
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
22
-
-
10644256230
-
Endophytes and mycoparasites associated with an indigenous forest tree, Theobroma gileri, in Ecuador and a preliminary assessment of their potential as biocontrol agents of cocoa diseases
-
Evans HC, Holmes KA, Thomas SE. 2003. Endophytes and mycoparasites associated with an indigenous forest tree, Theobroma gileri, in Ecuador and a preliminary assessment of their potential as biocontrol agents of cocoa diseases. Mycol Prog 2:149-160, doi:10.1007/s11557-006-0053-4
-
(2003)
Mycol Prog
, vol.2
, pp. 149-160
-
-
Evans, H.C.1
Holmes, K.A.2
Thomas, S.E.3
-
23
-
-
0000474414
-
A comparative study of fungal endophytes in xylem and bark of Alnus species in England and Switzerland
-
Fisher PJ, Petrini O. 1990. A comparative study of fungal endophytes in xylem and bark of Alnus species in England and Switzerland. Mycol Res 94:313-319, doi:10.1016/S0953-7562(09)80356-0
-
(1990)
Mycol Res
, vol.94
, pp. 313-319
-
-
Fisher, P.J.1
Petrini, O.2
-
24
-
-
0032807324
-
Biodiversity of palm fungi in the tropics: Are global fungal diversity estimates realistic?
-
Fröhlich J, Hyde KD. 1999. Biodiversity of palm fungi in the tropics: Are global fungal diversity estimates realistic? Biodivers Conserv 8: 977-1004, doi:10.1023/A:1008895913857
-
(1999)
Biodivers Conserv
, vol.8
, pp. 977-1004
-
-
Fröhlich, J.1
Hyde, K.D.2
-
26
-
-
77955580865
-
Diversity of fungal endophytes in leaves and stems of rubber trees (Hevea brasiliensis) in Tambopata, Peru
-
Gazis R, Chaverri P. 2010. Diversity of fungal endophytes in leaves and stems of rubber trees (Hevea brasiliensis) in Tambopata, Peru. Fungal Ecol 3:240-254, doi:10.1016/j.funeco.2009.12.001
-
(2010)
Fungal Ecol
, vol.3
, pp. 240-254
-
-
Gazis, R.1
Chaverri, P.2
-
27
-
-
84864572814
-
Culture-based study of endophytes associated with rubber trees in Peru reveals a new class of Pezizomycotina: Xylonomycetes
-
Gazis R, Miadlikowska J, Lutzoni F, Arnold AE, Chaverri P. 2012. Culture-based study of endophytes associated with rubber trees in Peru reveals a new class of Pezizomycotina: Xylonomycetes. Mol Phylogenet Evol 65:294-304, doi:10.1016/j.ympev.2012.06.019
-
(2012)
Mol Phylogenet Evol
, vol.65
, pp. 294-304
-
-
Gazis, R.1
Miadlikowska, J.2
Lutzoni, F.3
Arnold, A.E.4
Chaverri, P.5
-
28
-
-
0000228653
-
North American wood-rotting fungi that cause brown rots
-
Gilbertson RL. 1981. North American wood-rotting fungi that cause brown rots. Mycotaxon 12:372-416.
-
(1981)
Mycotaxon
, vol.12
, pp. 372-416
-
-
Gilbertson, R.L.1
-
29
-
-
67650629334
-
Mycobiota inhabiting sapwood of healthy and declining Scots pine (Pinus sylvestris L.) trees in the Alps
-
Giordano L, Gonthier P, Varese G, Miserere L, Nicolotti G. 2009. Mycobiota inhabiting sapwood of healthy and declining Scots pine (Pinus sylvestris L.) trees in the Alps. Fungal Divers 38:69-83.
-
(2009)
Fungal Divers
, vol.38
, pp. 69-83
-
-
Giordano, L.1
Gonthier, P.2
Varese, G.3
Miserere, L.4
Nicolotti, G.5
-
30
-
-
56049106605
-
Pseudolagarobasidium (Basidiomycota): on the reinstatement of a genus of parasitic, saprophytic and endophytic resupinate fungi
-
Hallenberg N, Ryberg M, Nilsson RH, Wood AR, Wu S-H. 2008. Pseudolagarobasidium (Basidiomycota): on the reinstatement of a genus of parasitic, saprophytic and endophytic resupinate fungi. Botany 86:1319-1325, doi:10.1139/B08-088
-
(2008)
Botany
, vol.86
, pp. 1319-1325
-
-
Hallenberg, N.1
Ryberg, M.2
Nilsson, R.H.3
Wood, A.R.4
Wu, S.-H.5
-
31
-
-
0036721402
-
Abiotic variables effect differential expression of latent infections in beech (Fagus sylvatica)
-
Hendry SJ, Boddy L, Lonsdale D. 2002. Abiotic variables effect differential expression of latent infections in beech (Fagus sylvatica). New Phytol 155:449-460, doi:10.1046/j.1469-8137.2002.00473.x
-
(2002)
New Phytol
, vol.155
, pp. 449-460
-
-
Hendry, S.J.1
Boddy, L.2
Lonsdale, D.3
-
32
-
-
34548603676
-
Molecular phylogeny suggests a single origin of insect symbiosis in the Pucciniomycetes with support for some relationships within the genus Septobasidium
-
Henk DA, Vilgalys R. 2007. Molecular phylogeny suggests a single origin of insect symbiosis in the Pucciniomycetes with support for some relationships within the genus Septobasidium. Am J Bot 94:1515-1526, doi:10.3732/ajb.94.9.1515
-
(2007)
Am J Bot
, vol.94
, pp. 1515-1526
-
-
Henk, D.A.1
Vilgalys, R.2
-
33
-
-
84884197492
-
Bioactivity of fungal endophytes as a function of endophyte taxonomy and the taxonomy and distribution of their host plants
-
Higginbotham SJ, Arnold AE, Ibanez A, Spadafora C, Coley PD, Kursar TA. 2013. Bioactivity of fungal endophytes as a function of endophyte taxonomy and the taxonomy and distribution of their host plants. PloS one 8:e73192, doi:10.1371/journal.pone.0073192
-
(2013)
PloS one
, vol.8
-
-
Higginbotham, S.J.1
Arnold, A.E.2
Ibanez, A.3
Spadafora, C.4
Coley, P.D.5
Kursar, T.A.6
-
34
-
-
61849137385
-
The fungal endophyte dilemma
-
Hyde K, Soytong K. 2008. The fungal endophyte dilemma. Fungal Divers 33:163-173.
-
(2008)
Fungal Divers
, vol.33
, pp. 163-173
-
-
Hyde, K.1
Soytong, K.2
-
35
-
-
84889602902
-
Diversity and dynamics of fungal endophytes in leaves, stems and roots of Stellera chamaejasme L. in northwestern China
-
Jin H, Yan Z, Liu Q, Yang X, Chen J, Qin B. 2013. Diversity and dynamics of fungal endophytes in leaves, stems and roots of Stellera chamaejasme L. in northwestern China. Anton Leeuw 104:949-963, doi:10.1007/s10482-013-0014-2
-
(2013)
Anton Leeuw
, vol.104
, pp. 949-963
-
-
Jin, H.1
Yan, Z.2
Liu, Q.3
Yang, X.4
Chen, J.5
Qin, B.6
-
36
-
-
0037100671
-
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
-
Katoh K, Misawa K, Kuma Ki, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30: 3059-3066, doi:10.1093/nar/gkf436
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.3
Miyata, T.4
-
37
-
-
84875619226
-
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
-
Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30:772-780, doi:10.1093/molbev/mst010
-
(2013)
Mol Biol Evol
, vol.30
, pp. 772-780
-
-
Katoh, K.1
Standley, D.M.2
-
38
-
-
45949107473
-
Recent developments in the MAFFT multiple sequence alignment program
-
Katoh K, Toh H. 2008. Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinf 9: 286-298, doi:10.1093/bib/bbn013
-
(2008)
Brief Bioinf
, vol.9
, pp. 286-298
-
-
Katoh, K.1
Toh, H.2
-
39
-
-
84555194934
-
SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees
-
Liu K, Warnow TJ, Holder MT, Nelesen SM, Yu J, Stamatakis AP, Linder CR. 2012. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees. Syst Biol 61:90-106, doi:10.1093/sysbio/syr095
-
(2012)
Syst Biol
, vol.61
, pp. 90-106
-
-
Liu, K.1
Warnow, T.J.2
Holder, M.T.3
Nelesen, S.M.4
Yu, J.5
Stamatakis, A.P.6
Linder, C.R.7
-
40
-
-
29144464937
-
UniFrac: a new phylogenetic method for comparing microbial communities
-
Lozupone C, Knight R. 2005. UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microb 71: 8228-8235, doi:10.1128/AEM.71.12.8228-8235.2005
-
(2005)
Appl Environ Microb
, vol.71
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
42
-
-
34247562964
-
Major clades of Agaricales: a multilocus phylogenetic overview
-
Matheny PB, Curtis JM, Hofstetter V, Aime MC, Moncalvo J-M, Ge Z-W, Yang Z-L, Slot JC, Ammirati JF, Baroni TJ. 2006. Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia 98:982-995, doi:10.3852/mycologia.98.6.982
-
(2006)
Mycologia
, vol.98
, pp. 982-995
-
-
Matheny, P.B.1
Curtis, J.M.2
Hofstetter, V.3
Aime, M.C.4
Moncalvo, J.-M.5
Ge, Z.-W.6
Yang, Z.-L.7
Slot, J.C.8
Ammirati, J.F.9
Baroni, T.J.10
-
43
-
-
84897852273
-
Diversity and saline resistance of endophytic fungi associated with Pinus thunbergii in coastal shelterbelts of Korea
-
Min Y, Park M, Fong J, Quan Y, Jung S, Lim Y. 2013. Diversity and saline resistance of endophytic fungi associated with Pinus thunbergii in coastal shelterbelts of Korea. J Microbiol Biotechnol 24:3.
-
(2013)
J Microbiol Biotechnol
, vol.24
, pp. 3
-
-
Min, Y.1
Park, M.2
Fong, J.3
Quan, Y.4
Jung, S.5
Lim, Y.6
-
44
-
-
45749142504
-
Intraspecific ITS variability in the kingdom Fungi as expressed in the international sequence databases and its implications for molecular species identification
-
Nilsson RH, Kristiansson E, Ryberg M, Hallenberg N, Larsson K-H. 2008. Intraspecific ITS variability in the kingdom Fungi as expressed in the international sequence databases and its implications for molecular species identification. Evol Bioinf Online 4:193.
-
(2008)
Evol Bioinf Online
, vol.4
, pp. 193
-
-
Nilsson, R.H.1
Kristiansson, E.2
Ryberg, M.3
Hallenberg, N.4
Larsson, K.-H.5
-
45
-
-
84977812148
-
Ganoderma psuedoferreum: biological control possibilities with microorganisms isolated from soils of rubber plantations in Nigeria
-
Ogbebor N, Adekunle A, Eghafona N, Ogboghodo A. 2010. Ganoderma psuedoferreum: biological control possibilities with microorganisms isolated from soils of rubber plantations in Nigeria. Afr J Agric Res 6:301-305.
-
(2010)
Afr J Agric Res
, vol.6
, pp. 301-305
-
-
Ogbebor, N.1
Adekunle, A.2
Eghafona, N.3
Ogboghodo, A.4
-
46
-
-
84901435433
-
Molecular phylogeny of Rigidoporus microporus isolates associated with white rot disease of rubber trees Hevea brasiliensis
-
Oghenekaro AO, Miettinen O, Omorusi VI, Evueh GA, Farid MA, Gazis R, Asiegbu FO. 2014. Molecular phylogeny of Rigidoporus microporus isolates associated with white rot disease of rubber trees Hevea brasiliensis. Fungal Biol 118:495-506, doi:10.1016/j.funbio.2014.04.001
-
(2014)
Fungal Biol
, vol.118
, pp. 495-506
-
-
Oghenekaro, A.O.1
Miettinen, O.2
Omorusi, V.I.3
Evueh, G.A.4
Farid, M.A.5
Gazis, R.6
Asiegbu, F.O.7
-
47
-
-
33644676927
-
Evaluation of fungal endophytes for lignocellulolytic enzyme production and wood biodegradation
-
Oses R, Valenzuela S, Freer J, Baeza J, Rodríguez J. 2006. Evaluation of fungal endophytes for lignocellulolytic enzyme production and wood biodegradation. Int Biodeter Biodegr 57:129-135, doi:10.1016/j.ibiod.2006.01.002
-
(2006)
Int Biodeter Biodegr
, vol.57
, pp. 129-135
-
-
Oses, R.1
Valenzuela, S.2
Freer, J.3
Baeza, J.4
Rodríguez, J.5
-
48
-
-
61849105620
-
Fungal endophytes in xylem of healthy Chilean trees and their possible role in early wood decay
-
Oses R, Valenzuela S, Freer J, Sanfuentes E, Rodriguez J. 2008. Fungal endophytes in xylem of healthy Chilean trees and their possible role in early wood decay. Fungal Divers 33:77-86.
-
(2008)
Fungal Divers
, vol.33
, pp. 77-86
-
-
Oses, R.1
Valenzuela, S.2
Freer, J.3
Sanfuentes, E.4
Rodriguez, J.5
-
49
-
-
77956900496
-
Do all trees carry the seeds of their own destruction? PCR reveals numerous wood decay fungi latently present in sapwood of a wide range of angiosperm trees
-
Parfitt D, Hunt J, Dockrell D, Rogers HJ, Boddy L. 2010. Do all trees carry the seeds of their own destruction? PCR reveals numerous wood decay fungi latently present in sapwood of a wide range of angiosperm trees. Fungal Ecol 3:338-346, doi:10.1016/j.funeco.2010.02.001
-
(2010)
Fungal Ecol
, vol.3
, pp. 338-346
-
-
Parfitt, D.1
Hunt, J.2
Dockrell, D.3
Rogers, H.J.4
Boddy, L.5
-
50
-
-
84878940251
-
Factors shaping community structure of endophytic fungi-evidence from the Pinus-Viscum system
-
Peršoh D. 2013. Factors shaping community structure of endophytic fungi-evidence from the Pinus-Viscum system. Fungal Divers 60:55-69, doi:10.1007/s13225-013-0225-x
-
(2013)
Fungal Divers
, vol.60
, pp. 55-69
-
-
Peršoh, D.1
-
51
-
-
0024189832
-
A comparative study of fungal endophytes in xylem and whole stem of Pinus sylvestris and Fagus sylvatica
-
Petrini O, Fisher P. 1988. A comparative study of fungal endophytes in xylem and whole stem of Pinus sylvestris and Fagus sylvatica. T Br Mycol Soc 91:233-238, doi:10.1016/S0007-1536(88)80210-9
-
(1988)
T Br Mycol Soc
, vol.91
, pp. 233-238
-
-
Petrini, O.1
Fisher, P.2
-
52
-
-
0000544135
-
Occurrence of fungal endophytes in twigs of Salix fragilis and Quercus robur
-
Petrini O, Fisher P. 1990. Occurrence of fungal endophytes in twigs of Salix fragilis and Quercus robur. Mycol Res 94: 1077-1080, doi:10.1016/S0953-7562(09)81336-1
-
(1990)
Mycol Res
, vol.94
, pp. 1077-1080
-
-
Petrini, O.1
Fisher, P.2
-
53
-
-
79955848507
-
Occurrence and diversity of basidiomycetous endophytes from the oil palm, Elaeis guineensis in Thailand
-
Pinruan U, Rungjindamai N, Choeyklin R, Lumyong S, Hyde KD, Jones EG. 2010. Occurrence and diversity of basidiomycetous endophytes from the oil palm, Elaeis guineensis in Thailand. Fungal Divers 41:71-88, doi:10.1007/s13225-010-0029-1
-
(2010)
Fungal Divers
, vol.41
, pp. 71-88
-
-
Pinruan, U.1
Rungjindamai, N.2
Choeyklin, R.3
Lumyong, S.4
Hyde, K.D.5
Jones, E.G.6
-
54
-
-
80051773280
-
Hidden fungi, emergent properties: endophytes and microbiomes
-
Porras-Alfaro A, Bayman P. 2011. Hidden fungi, emergent properties: endophytes and microbiomes. Phytopathology 49:291, doi:10.1146/annurev-phyto-080508-081831
-
(2011)
Phytopathology
, vol.49
, pp. 291
-
-
Porras-Alfaro, A.1
Bayman, P.2
-
55
-
-
77949718257
-
FastTree 2- approximately maximum-likelihood trees for large alignments
-
Price MN, Dehal PS, Arkin AP. 2010. FastTree 2- approximately maximum-likelihood trees for large alignments. PloS one 5:e9490, doi:10.1371/journal.pone.0009490
-
(2010)
PloS one
, vol.5
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
56
-
-
79955809705
-
Can leaf-degrading enzymes provide evidence that endophytic fungi becoming saprobes?
-
Promputtha I, Hyde KD, McKenzie EH, Peberdy JF, Lumyong S. 2010. Can leaf-degrading enzymes provide evidence that endophytic fungi becoming saprobes? Fungal Divers 41:89-99, doi:10.1007/s13225-010-0024-6
-
(2010)
Fungal Divers
, vol.41
, pp. 89-99
-
-
Promputtha, I.1
Hyde, K.D.2
McKenzie, E.H.3
Peberdy, J.F.4
Lumyong, S.5
-
57
-
-
34248581011
-
A phylogenetic evaluation of whether endophytes become saprotrophs at host senescence
-
Promputtha I, Lumyong S, Dhanasekaran V, McKenzie EHC, Hyde KD, Jeewon R. 2007. A phylogenetic evaluation of whether endophytes become saprotrophs at host senescence. Microb Ecol 53:579-590, doi:10.1007/s00248-006-9117-x
-
(2007)
Microb Ecol
, vol.53
, pp. 579-590
-
-
Promputtha, I.1
Lumyong, S.2
Dhanasekaran, V.3
McKenzie, E.H.C.4
Hyde, K.D.5
Jeewon, R.6
-
58
-
-
63449129221
-
Fungal endophytes: diversity and functional roles
-
Rodriguez R, White J Jr, Arnold A, Redman R. 2009. Fungal endophytes: diversity and functional roles. New Phytol 182:314-330, doi:10.1111/j.1469-8137.2009.02773.x
-
(2009)
New Phytol
, vol.182
, pp. 314-330
-
-
Rodriguez, R.1
White, J.2
Arnold, A.3
Redman, R.4
-
59
-
-
33645822740
-
Diversity of endophytic fungal community of cacao (Theobroma cacao L.) and biological control of Crinipellis perniciosa, causal agent of witches' broom disease
-
Rubini MR, Silva-Ribeiro RT, Pomella AWV, Maki CS, Araújo WL, Dos Santos DR, Azevedo JL. 2005. Diversity of endophytic fungal community of cacao (Theobroma cacao L.) and biological control of Crinipellis perniciosa, causal agent of witches' broom disease. Int J Biol Sci 1: 24-33, doi:10.7150/ijbs.1.24
-
(2005)
Int J Biol Sci
, vol.1
, pp. 24-33
-
-
Rubini, M.R.1
Silva-Ribeiro, R.T.2
Pomella, A.W.V.3
Maki, C.S.4
Araújo, W.L.5
Dos Santos, D.R.6
Azevedo, J.L.7
-
60
-
-
63149152991
-
Molecular characterization of basidiomycetous endophytes isolated from leaves, rachis and petioles of the oil palm, Elaeis guineensis
-
Rungjindamai N, Pinruan U, Choeyklin R, Hattori T, Jones E. 2008. Molecular characterization of basidiomycetous endophytes isolated from leaves, rachis and petioles of the oil palm, Elaeis guineensis. Thailand. Fungal Divers 33:139-161.
-
(2008)
Thailand. Fungal Divers
, vol.33
, pp. 139-161
-
-
Rungjindamai, N.1
Pinruan, U.2
Choeyklin, R.3
Hattori, T.4
Jones, E.5
-
62
-
-
77956620252
-
Phylogenetic diversity of endophyte assemblages associated with the tropical seagrass Enhalus acoroides in Thailand
-
Lubrecht & Cramer 45
-
Sakayaroj J, Preedanon S, Supaphon O, Jones EG, Phongpaichit S. 2010. Phylogenetic diversity of endophyte assemblages associated with the tropical seagrass Enhalus acoroides in Thailand. Fungal Divers 42:27 Lubrecht & Cramer 45.
-
(2010)
Fungal Divers
, vol.42
, pp. 27
-
-
Sakayaroj, J.1
Preedanon, S.2
Supaphon, O.3
Jones, E.G.4
Phongpaichit, S.5
-
63
-
-
33746033832
-
Trichoderma theobromicola and T. paucisporum: two new species isolated from cacao in South America
-
Samuels GJ, Suarez C, Solis K, Holmes KA, Thomas SE, Ismaiel A, Evans HC. 2006. Trichoderma theobromicola and T. paucisporum: two new species isolated from cacao in South America. Mycol Res 110:381-392, doi:10.1016/j.mycres.2006.01.009
-
(2006)
Mycol Res
, vol.110
, pp. 381-392
-
-
Samuels, G.J.1
Suarez, C.2
Solis, K.3
Holmes, K.A.4
Thomas, S.E.5
Ismaiel, A.6
Evans, H.C.7
-
64
-
-
60449095481
-
Diversity and structure of the fungal endophytic assemblages from two sympatric coastal grasses
-
Sánchez Márquez S, Bills GF, Zabalgogeazcoa I. 2008. Diversity and structure of the fungal endophytic assemblages from two sympatric coastal grasses. Fungal Divers 33:87-100.
-
(2008)
Fungal Divers
, vol.33
, pp. 87-100
-
-
Sánchez Márquez, S.1
Bills, G.F.2
Zabalgogeazcoa, I.3
-
65
-
-
26244452210
-
Fungal epiphytes and endophytes of coffee leaves (Coffea arabica)
-
Santamaría J, Bayman P. 2005. Fungal epiphytes and endophytes of coffee leaves (Coffea arabica). Microbial Ecol 50:1-8, doi:10.1007/s00248-004-0002-1
-
(2005)
Microbial Ecol
, vol.50
, pp. 1-8
-
-
Santamaría, J.1
Bayman, P.2
-
66
-
-
79952005882
-
Exploring the evolutionary ecology of fungal endophytes in agricultural systems: using functional traits to reveal mechanisms in community processes
-
Saunders M, Glenn AE, Kohn LM. 2010. Exploring the evolutionary ecology of fungal endophytes in agricultural systems: using functional traits to reveal mechanisms in community processes. Evol Appl 3:525-537, doi:10.1111/j.1752-4571.2010.00141.x
-
(2010)
Evol Appl
, vol.3
, pp. 525-537
-
-
Saunders, M.1
Glenn, A.E.2
Kohn, L.M.3
-
67
-
-
72949107142
-
Introducing Mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ. 2009. Introducing Mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microb 75:7537-7541, doi:10.1128/AEM.01541-09
-
(2009)
Appl Environ Microb
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
-
68
-
-
77954552160
-
Evolution of host breadth in broad interactions: mycorrhizal specificity in east Asian and North American rattlesnake plantains (Goodyera spp.) and their fungal hosts
-
Shefferson RP, Cowden CC, MccormickMK, Yukawa T, Oguratsujita YUKI, Hashimoto T. 2010. Evolution of host breadth in broad interactions: mycorrhizal specificity in east Asian and North American rattlesnake plantains (Goodyera spp.) and their fungal hosts. Mol Ecol 19:3008-3017, doi:10.1111/j.1365-294X.2010.04693.x
-
(2010)
Mol Ecol
, vol.19
, pp. 3008-3017
-
-
Shefferson, R.P.1
Cowden, C.C.2
Mccormick, M.K.3
Yukawa, T.4
Oguratsujita, Y.U.K.I.5
Hashimoto, T.6
-
69
-
-
34548616090
-
Endophytic fungi in forest trees: are they mutualists?
-
Sieber TN. 2007. Endophytic fungi in forest trees: are they mutualists? Fungal Biol Rev 21:75-89, doi:10.1016/j.fbr.2007.05.004
-
(2007)
Fungal Biol Rev
, vol.21
, pp. 75-89
-
-
Sieber, T.N.1
-
70
-
-
84860434973
-
raxmlGUI: a graphical frontend for RAxML
-
Silvestro D, Michalak I. 2012. raxmlGUI: a graphical frontend for RAxML. Org Divers Evol 12:335-337, doi:10.1007/s13127-011-0056-0
-
(2012)
Org Divers Evol
, vol.12
, pp. 335-337
-
-
Silvestro, D.1
Michalak, I.2
-
71
-
-
77954984525
-
Molecular diversity of fungal endophytes isolated from Garcinia mangostana and Garcinia parvifolia
-
Sim J-H, Khoo C-H, Lee L-H, Cheah Y-K. 2010. Molecular diversity of fungal endophytes isolated from Garcinia mangostana and Garcinia parvifolia. J Microbiol Biotechnol 20:651-658, doi:10.4014/jmb.0909.09030
-
(2010)
J Microbiol Biotechnol
, vol.20
, pp. 651-658
-
-
Sim, J.-H.1
Khoo, C.-H.2
Lee, L.-H.3
Cheah, Y.-K.4
-
72
-
-
34548636747
-
Botryosphaeriaceae as endophytes and latent pathogens of woody plants: diversity, ecology and impact
-
Slippers B, Wingfield MJ. 2007. Botryosphaeriaceae as endophytes and latent pathogens of woody plants: diversity, ecology and impact. Fungal Biol Rev 21:90-106, doi:10.1016/j.fbr.2007.06.002
-
(2007)
Fungal Biol Rev
, vol.21
, pp. 90-106
-
-
Slippers, B.1
Wingfield, M.J.2
-
73
-
-
84904977940
-
Hygrocybe virginea is a systemic endophyte of Plantago lanceolata
-
Tello SA, Silva-Flores P, Agerer R, Halbwachs H, Beck A, Peršoh D. 2013. Hygrocybe virginea is a systemic endophyte of Plantago lanceolata. Mycol Prog 13:471-475, doi:10.1007/s11557-013-0928-0
-
(2013)
Mycol Prog
, vol.13
, pp. 471-475
-
-
Tello, S.A.1
Silva-Flores, P.2
Agerer, R.3
Halbwachs, H.4
Beck, A.5
Peršoh, D.6
-
74
-
-
45849095172
-
Molecular characterization of fungal endophytic morphospecies associated with the indigenous forest tree, Theobroma gileri, in Ecuador
-
Thomas SE, Crozier J, Aime MC, Evans HC, Holmes KA. 2008. Molecular characterization of fungal endophytic morphospecies associated with the indigenous forest tree, Theobroma gileri, in Ecuador. Mycol Res 112:852-860, doi:10.1016/j.mycres.2008.01.008
-
(2008)
Mycol Res
, vol.112
, pp. 852-860
-
-
Thomas, S.E.1
Crozier, J.2
Aime, M.C.3
Evans, H.C.4
Holmes, K.A.5
-
75
-
-
84875704802
-
Leaf-inhabiting endophytic fungi of European Beech (Fagus sylvatica L.) co-occur in leaf litter but are rare on decaying wood of the same host
-
Unterseher M, Peršoh D, Schnittler M. 2013. Leaf-inhabiting endophytic fungi of European Beech (Fagus sylvatica L.) co-occur in leaf litter but are rare on decaying wood of the same host. Fungal Divers 60:43-54, doi:10.1007/s13225-013-0222-0
-
(2013)
Fungal Divers
, vol.60
, pp. 43-54
-
-
Unterseher, M.1
Peršoh, D.2
Schnittler, M.3
-
76
-
-
2342445666
-
Ligninolytic enzymes from tropical endophytic Xylariaceae
-
Urairuj C, Khanongnuch C, Lumyong S. 2003. Ligninolytic enzymes from tropical endophytic Xylariaceae. Fungal Divers 13:209-219.
-
(2003)
Fungal Divers
, vol.13
, pp. 209-219
-
-
Urairuj, C.1
Khanongnuch, C.2
Lumyong, S.3
-
77
-
-
68949175490
-
Fungal entomopathogens: new insights on their ecology
-
Vega FE, Goettel MS, Blackwell M, Chandler D, Jackson MA, Keller S, Koike M, Maniania NK, Monzon A, Ownley BH. 2009. Fungal entomopathogens: new insights on their ecology. Fungal Ecol 2:149-159, doi:10.1016/j.funeco.2009.05.001
-
(2009)
Fungal Ecol
, vol.2
, pp. 149-159
-
-
Vega, F.E.1
Goettel, M.S.2
Blackwell, M.3
Chandler, D.4
Jackson, M.A.5
Keller, S.6
Koike, M.7
Maniania, N.K.8
Monzon, A.9
Ownley, B.H.10
-
78
-
-
77955581206
-
Fungal endophytes in green coffee seeds
-
Vega FE, Posada F, Aime MC, Peterson SW, Rehner SA. 2008. Fungal endophytes in green coffee seeds. Mycosystema 27:75-84.
-
(2008)
Mycosystema
, vol.27
, pp. 75-84
-
-
Vega, F.E.1
Posada, F.2
Aime, M.C.3
Peterson, S.W.4
Rehner, S.A.5
-
79
-
-
33744799842
-
Penicillium species endophytic in coffee plants and ochratoxin A production
-
Vega FE, Posada F, Peterson SW, Gianfagna TJ, Chaves F. 2006. Penicillium species endophytic in coffee plants and ochratoxin A production. Mycologia 98:31-42, doi:10.3852/mycologia.98.1.31
-
(2006)
Mycologia
, vol.98
, pp. 31-42
-
-
Vega, F.E.1
Posada, F.2
Peterson, S.W.3
Gianfagna, T.J.4
Chaves, F.5
-
80
-
-
30944454121
-
Taxonomic placement of sterile morphotypes of endophytic fungi from Pinus tabulaeformis (Pinaceae) in northeast China based on rDNA sequences
-
Wang Y, Guo L, Hyde K. 2005. Taxonomic placement of sterile morphotypes of endophytic fungi from Pinus tabulaeformis (Pinaceae) in northeast China based on rDNA sequences. Fungal Divers 20:235-260.
-
(2005)
Fungal Divers
, vol.20
, pp. 235-260
-
-
Wang, Y.1
Guo, L.2
Hyde, K.3
-
81
-
-
0000432452
-
Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
-
Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. San Diego, California: Academic Press
-
White TJ, Bruns T, Lee S, Taylor JW. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. San Diego, California: Academic Press. p 315-322.
-
(1990)
PCR protocols: a guide to methods and applications
, pp. 315-322
-
-
White, T.J.1
Bruns, T.2
Lee, S.3
Taylor, J.W.4
-
82
-
-
79952005589
-
From pattern to process: species and functional diversity in fungal endophytes of Abies beshanzuensis
-
Yuan ZL, Rao LB, Chen YC, Zhang CL, Wu YG. 2011. From pattern to process: species and functional diversity in fungal endophytes of Abies beshanzuensis. Fungal Biol 115:197-213, doi:10.1016/j.funbio.2010.11.002
-
(2011)
Fungal Biol
, vol.115
, pp. 197-213
-
-
Yuan, Z.L.1
Rao, L.B.2
Chen, Y.C.3
Zhang, C.L.4
Wu, Y.G.5
-
83
-
-
0031253701
-
Bamboozled again! Inadvertent isolation of fungal rDNA sequences from bamboos (Poaceae: Bambusoideae)
-
Zhang W, Wendel JF, Clark LG. 1997. Bamboozled again! Inadvertent isolation of fungal rDNA sequences from bamboos (Poaceae: Bambusoideae). Mol Phylogenet Evol 8:205-217, doi:10.1006/mpev.1997.0422
-
(1997)
Mol Phylogenet Evol
, vol.8
, pp. 205-217
-
-
Zhang, W.1
Wendel, J.F.2
Clark, L.G.3
|