-
1
-
-
73149095830
-
Viral adaptation to host: A proteome-based analysis of codon usage and amino acid preferences
-
Bahir I, Fromer M, Prat Y and Linial M (2009). Viral adaptation to host: a proteome-based analysis of codon usage and amino acid preferences. Mol. Syst. Biol. 5: 311.
-
(2009)
Mol. Syst. Biol
, vol.5
, pp. 311
-
-
Bahir, I.1
Fromer, M.2
Prat, Y.3
Linial, M.4
-
2
-
-
0027960812
-
Role of the AGA/AGG codons, the rarest codons in global gene expression in Escherichia coli
-
Chen GT and Inouye M (1994). Role of the AGA/AGG codons, the rarest codons in global gene expression in Escherichia coli. Genes Dev. 8: 2641-2652.
-
(1994)
Genes Dev
, vol.8
, pp. 2641-2652
-
-
Chen, G.T.1
Inouye, M.2
-
3
-
-
58449121403
-
Estimating translational selection in eukaryotic genomes
-
dos Reis M and Wernisch L (2009). Estimating translational selection in eukaryotic genomes. Mol. Biol. Evol. 26: 451-461.
-
(2009)
Mol. Biol. Evol
, vol.26
, pp. 451-461
-
-
dos Reis, M.1
Wernisch, L.2
-
4
-
-
0141889854
-
Diversifying selection in a parasitoid's symbiotic virus among genes involved in inhibiting host immunity
-
Dupas S, Turnbull MW and Webb BA (2003). Diversifying selection in a parasitoid's symbiotic virus among genes involved in inhibiting host immunity. Immunogenetics 55: 351-361.
-
(2003)
Immunogenetics
, vol.55
, pp. 351-361
-
-
Dupas, S.1
Turnbull, M.W.2
Webb, B.A.3
-
5
-
-
0027432923
-
Reduced synonymous substitution rate at the start of enterobacterial genes
-
Eyre-Walker A and Bulmer M (1993). Reduced synonymous substitution rate at the start of enterobacterial genes. Nucl. Acids Res. 21: 4599-4603.
-
(1993)
Nucl. Acids Res
, vol.21
, pp. 4599-4603
-
-
Eyre-Walker, A.1
Bulmer, M.2
-
6
-
-
0033972445
-
Molecular evolution of the Paramyxoviridae and Rhabdoviridae multiple-protein-encoding P gene
-
Jordan IK, Sutter BAT and McClure MA (2000). Molecular evolution of the Paramyxoviridae and Rhabdoviridae multiple-protein-encoding P gene. Mol. Biol. Evol. 17: 75-86.
-
(2000)
Mol. Biol. Evol
, vol.17
, pp. 75-86
-
-
Jordan, I.K.1
Sutter, B.A.T.2
McClure, M.A.3
-
7
-
-
0023134450
-
Translation rate modification by preferential codon usage: Intragenic position effects
-
Liljenström H and von Heijne G (1987). Translation rate modification by preferential codon usage: intragenic position effects. J. Theor. Biol. 124: 43-55.
-
(1987)
J. Theor. Biol
, vol.124
, pp. 43-55
-
-
Liljenström, H.1
von Heijne, G.2
-
8
-
-
67651085081
-
Virus-host coevolution: Common patterns of nucleotide motif usage in Flaviviridae and their hosts
-
Lobo FP, Mota BE, Pena SD, Azevedo V, et al. (2009). Virus-host coevolution: common patterns of nucleotide motif usage in Flaviviridae and their hosts. PLoS One 4: e6282.
-
(2009)
PLoS One
, vol.4
-
-
Lobo, F.P.1
Mota, B.E.2
Pena, S.D.3
Azevedo, V.4
-
9
-
-
0031030479
-
Constrained evolution with respect to gene overlap of hepatitis B virus
-
Mizokami M, Orito E, Ohba K, Ikeo K, et al. (1997). Constrained evolution with respect to gene overlap of hepatitis B virus. J. Mol. Evol. 44 (Suppl 1): S83-S90.
-
(1997)
J. Mol. Evol
, vol.44
, pp. S83-S90
-
-
Mizokami, M.1
Orito, E.2
Ohba, K.3
Ikeo, K.4
-
10
-
-
0342614926
-
Codon usage tabulated from international DNA sequence databases: Status for the year 2000
-
Nakamura Y, Gojobori T and Ikemura T (2000). Codon usage tabulated from international DNA sequence databases: status for the year 2000. Nucl. Acids Res. 28: 292.
-
(2000)
Nucl. Acids Res
, vol.28
, pp. 292
-
-
Nakamura, Y.1
Gojobori, T.2
Ikemura, T.3
-
11
-
-
33645539406
-
Origin and evolution of overlapping genes in the family Microviridae
-
Pavesi A (2006). Origin and evolution of overlapping genes in the family Microviridae. J. Gen. Virol. 87: 1013-1017.
-
(2006)
J. Gen. Virol
, vol.87
, pp. 1013-1017
-
-
Pavesi, A.1
-
12
-
-
0037213938
-
Genome variability and capsid structural constraints of hepatitis a virus
-
Sanchez G, Bosch A and Pinto RM (2003). Genome variability and capsid structural constraints of hepatitis a virus. J. Virol.77: 452-459.
-
(2003)
J. Virol
, vol.77
, pp. 452-459
-
-
Sanchez, G.1
Bosch, A.2
Pinto, R.M.3
-
13
-
-
0023046874
-
Codon usage in yeast: Cluster analysis clearly differentiates highly and lowly expressed genes
-
Sharp PM, Tuohy TM and Mosurski KR (1986). Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes. Nucl. Acids Res. 14: 5125-5143.
-
(1986)
Nucl. Acids Res
, vol.14
, pp. 5125-5143
-
-
Sharp, P.M.1
Tuohy, T.M.2
Mosurski, K.R.3
-
14
-
-
0035827918
-
Cooperative effects by the initiation codon and its flanking regions on translation initiation
-
Stenstrom CM, Holmgren E and Isaksson LA (2001a). Cooperative effects by the initiation codon and its flanking regions on translation initiation. Gene 273: 259-265.
-
(2001)
Gene
, vol.273
, pp. 259-265
-
-
Stenstrom, C.M.1
Holmgren, E.2
Isaksson, L.A.3
-
15
-
-
0035941484
-
Codon bias at the 3´-side of the initiation codon is correlated with translation initiation efficiency in Escherichia coli
-
Stenstrom CM, Jin H, Major LL, Tate WP, et al. (2001b). Codon bias at the 3´-side of the initiation codon is correlated with translation initiation efficiency in Escherichia coli. Gene 263: 273-284.
-
(2001)
Gene
, vol.263
, pp. 273-284
-
-
Stenstrom, C.M.1
Jin, H.2
Major, L.L.3
Tate, W.P.4
-
16
-
-
77951715627
-
An evolutionarily conserved mechanism for controlling the efficiency of protein translation
-
Tuller T, Carmi A, Vestsigian K, Navon S, et al. (2010). An evolutionarily conserved mechanism for controlling the efficiency of protein translation. Cell 141: 344-354.
-
(2010)
Cell
, vol.141
, pp. 344-354
-
-
Tuller, T.1
Carmi, A.2
Vestsigian, K.3
Navon, S.4
-
17
-
-
0034658427
-
Optimizing heterologous expression in dictyostelium: Importance of 5' codon adaptation
-
Vervoort EB, van Ravestein A, van Peij NN, Heikoop JC, et al. (2000). Optimizing heterologous expression in dictyostelium: importance of 5' codon adaptation. Nucl. Acids Res. 28: 2069-2074.
-
(2000)
Nucl. Acids Res
, vol.28
, pp. 2069-2074
-
-
Vervoort, E.B.1
van Ravestein, A.2
van Peij, N.N.3
Heikoop, J.C.4
-
18
-
-
77956395148
-
Codon usage bias and the evolution of influenza A viruses. Codon usage biases of influenza virus
-
Wong EH, Smith DK, Rabadan R, Peiris M, et al. (2010). Codon usage bias and the evolution of influenza A viruses. Codon usage biases of influenza virus. BMC Evol. Biol. 10: 253.
-
(2010)
BMC Evol. Biol
, vol.10
, pp. 253
-
-
Wong, E.H.1
Smith, D.K.2
Rabadan, R.3
Peiris, M.4
-
19
-
-
0009650916
-
Population dynamics of flaviviruses revealed by molecular phylogenies
-
Zanotto PM, Gould EA, Gao GF, Harvey PH, et al. (1996). Population dynamics of flaviviruses revealed by molecular phylogenies. Proc. Natl. Acad. Sci. U. S. A. 93: 548-553.
-
(1996)
Proc. Natl. Acad. Sci. U. S. A
, vol.93
, pp. 548-553
-
-
Zanotto, P.M.1
Gould, E.A.2
Gao, G.F.3
Harvey, P.H.4
-
20
-
-
72149119464
-
Evolutionary selection associated with the multi-function of overlapping genes in the hepatitis B virus
-
Zhang D, Chen J, Deng L, Mao Q, et al. (2009). Evolutionary selection associated with the multi-function of overlapping genes in the hepatitis B virus. Infect. Genet. Evol. 10: 84-88.
-
(2009)
Infect. Genet. Evol
, vol.10
, pp. 84-88
-
-
Zhang, D.1
Chen, J.2
Deng, L.3
Mao, Q.4
-
21
-
-
0027943337
-
Clustering of low usage codons and ribosome movement
-
Zhang S, Goldman E and Zubay G (1994). Clustering of low usage codons and ribosome movement. J. Theor. Biol. 170: 339-354.
-
(1994)
J. Theor. Biol
, vol.170
, pp. 339-354
-
-
Zhang, S.1
Goldman, E.2
Zubay, G.3
-
22
-
-
84872136109
-
The analysis of codon bias of foot-and-mouth disease virus and the adaptation of this virus to the hosts
-
Zhou JH, Gao ZL, Zhang J, Ding YZ, et al. (2013a). The analysis of codon bias of foot-and-mouth disease virus and the adaptation of this virus to the hosts. Infect. Genet. Evol.14: 105-110.
-
(2013)
Infect. Genet. Evol
, vol.14
, pp. 105-110
-
-
Zhou, J.H.1
Gao, Z.L.2
Zhang, J.3
Ding, Y.Z.4
-
23
-
-
84878362471
-
Clustering of low usage codons in the translation initiation region of hepatitis C virus
-
Zhou JH, Su JH, Chen HT, Zhang J, et al. (2013b). Clustering of low usage codons in the translation initiation region of hepatitis C virus. Infect. Genet. Evol. 18: 8-12.
-
(2013)
Infect. Genet. Evol
, vol.18
, pp. 8-12
-
-
Zhou, J.H.1
Su, J.H.2
Chen, H.T.3
Zhang, J.4
|