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Volumn 115, Issue , 2015, Pages 225-235

Strategy for NMR metabolomic analysis of urine in mouse models of obesity- from sample collection to interpretation of acquired data

Author keywords

Mouse; NMR metabolomics; Obesity; Urine

Indexed keywords

CREATININE; GLUTAMATE SODIUM; PROTEIN; BIOLOGICAL MARKER;

EID: 84938874009     PISSN: 07317085     EISSN: 1873264X     Source Type: Journal    
DOI: 10.1016/j.jpba.2015.06.036     Document Type: Article
Times cited : (16)

References (56)
  • 1
    • 79959936188 scopus 로고    scopus 로고
    • National, regional, and global trends in fasting plasma glucose and diabetes prevalence since 1980: systematic analysis of health examination surveys and epidemiological studies with 370 country-years and 2. 7 million participants
    • Danaei G., Finucane M.M., Lu Y., Singh G.M., Cowan M.J., Paciorek C.J., et al. National, regional, and global trends in fasting plasma glucose and diabetes prevalence since 1980: systematic analysis of health examination surveys and epidemiological studies with 370 country-years and 2. 7 million participants. Lancet 2011, 378:31-40.
    • (2011) Lancet , vol.378 , pp. 31-40
    • Danaei, G.1    Finucane, M.M.2    Lu, Y.3    Singh, G.M.4    Cowan, M.J.5    Paciorek, C.J.6
  • 2
    • 2342466734 scopus 로고    scopus 로고
    • Global prevalence of diabetes - Estimates for the year 2000 and projections for 2030
    • Wild S., Roglic G., Green A., Sicree R., King H. Global prevalence of diabetes - Estimates for the year 2000 and projections for 2030. Diabetes Care 2004, 27:1047-1053.
    • (2004) Diabetes Care , vol.27 , pp. 1047-1053
    • Wild, S.1    Roglic, G.2    Green, A.3    Sicree, R.4    King, H.5
  • 4
    • 72949132104 scopus 로고
    • Factors of risk in the development of coronary heart disease - six year follow-up experience the Framingham Study
    • Kannel W., Dawber T., Kagan A., Revotskie N., Stokes J. Factors of risk in the development of coronary heart disease - six year follow-up experience the Framingham Study. Ann. Intern. Med. 1961, 55:33-50.
    • (1961) Ann. Intern. Med. , vol.55 , pp. 33-50
    • Kannel, W.1    Dawber, T.2    Kagan, A.3    Revotskie, N.4    Stokes, J.5
  • 6
    • 77952339975 scopus 로고    scopus 로고
    • Integration of metabolomics and transcriptomics data to aid biomarker discovery in type 2 diabetes
    • Connor S.C., Hansen M.K., Corner A., Smith R.F., Ryan T.E. Integration of metabolomics and transcriptomics data to aid biomarker discovery in type 2 diabetes. Mol. Biosyst. 2010, 6:909-921.
    • (2010) Mol. Biosyst. , vol.6 , pp. 909-921
    • Connor, S.C.1    Hansen, M.K.2    Corner, A.3    Smith, R.F.4    Ryan, T.E.5
  • 7
    • 33746065648 scopus 로고    scopus 로고
    • Understanding mouse models of disease through metabolomics
    • Griffin J.L. Understanding mouse models of disease through metabolomics. Curr. Opin. Chem. Biol. 2006, 10:309-315.
    • (2006) Curr. Opin. Chem. Biol. , vol.10 , pp. 309-315
    • Griffin, J.L.1
  • 8
    • 79952216996 scopus 로고    scopus 로고
    • Biology of obesity: lessons from animal models of obesity
    • 197636
    • Kanasaki K., Koya D. Biology of obesity: lessons from animal models of obesity. J. Biomed. Biotechnol. 2011, 2011. article ID 197636.
    • (2011) J. Biomed. Biotechnol. , vol.2011
    • Kanasaki, K.1    Koya, D.2
  • 9
    • 0035479022 scopus 로고    scopus 로고
    • Knockout models resulting in the development of obesity
    • Butler A.A., Cone R.D. Knockout models resulting in the development of obesity. Trends Genet. 2001, 17:S50-S54.
    • (2001) Trends Genet. , vol.17 , pp. S50-S54
    • Butler, A.A.1    Cone, R.D.2
  • 11
    • 84868095524 scopus 로고    scopus 로고
    • Overview of animal models of obesity
    • Chapter 5 Unit 5.61.
    • Lutz T.A., Woods S.C. Overview of animal models of obesity. Curr. Protoc. Pharmacol. 2012, Chapter 5 Unit 5.61.
    • (2012) Curr. Protoc. Pharmacol.
    • Lutz, T.A.1    Woods, S.C.2
  • 12
    • 34248393099 scopus 로고    scopus 로고
    • High-fat diets: modeling the metabolic disorders of human obesity in rodents
    • Buettner R., Schölmerich J., Bollheimer L.C. High-fat diets: modeling the metabolic disorders of human obesity in rodents. Obesity 2007, 15:798-808.
    • (2007) Obesity , vol.15 , pp. 798-808
    • Buettner, R.1    Schölmerich, J.2    Bollheimer, L.C.3
  • 13
    • 84866596616 scopus 로고    scopus 로고
    • 1H NMR-based metabolite profiling of diet-induced obesity in a mouse model
    • Jung J.-Y., Kim I.-Y., Kim Y.-N., Kim J.-S., Shin J.-H., Jang Z.-H., et al. 1H NMR-based metabolite profiling of diet-induced obesity in a mouse model. BMB Rep. 2012, 45:419-424.
    • (2012) BMB Rep. , vol.45 , pp. 419-424
    • Jung, J.-Y.1    Kim, I.-Y.2    Kim, Y.-N.3    Kim, J.-S.4    Shin, J.-H.5    Jang, Z.-H.6
  • 14
    • 78650104693 scopus 로고    scopus 로고
    • 1H NMR-based metabolomic study on resistance to diet-induced obesity in AHNAK knock-out mice
    • Kim I.Y., Jung J., Jang M., Ahn Y.G., Shin J.H., Choi J.W., et al. 1H NMR-based metabolomic study on resistance to diet-induced obesity in AHNAK knock-out mice. Biochem. Biophys. Res. Commun. 2010, 403:428-434.
    • (2010) Biochem. Biophys. Res. Commun. , vol.403 , pp. 428-434
    • Kim, I.Y.1    Jung, J.2    Jang, M.3    Ahn, Y.G.4    Shin, J.H.5    Choi, J.W.6
  • 16
    • 33646190929 scopus 로고    scopus 로고
    • Type 2 diabetes mellitus in obese mouse model induced by monosodium glutamate
    • Nagata M., Suzuki W., Iizuka S., Tabuchi M., Maruyama H., Takeda S., et al. Type 2 diabetes mellitus in obese mouse model induced by monosodium glutamate. Exp. Anim. 2006, 55:109-115.
    • (2006) Exp. Anim. , vol.55 , pp. 109-115
    • Nagata, M.1    Suzuki, W.2    Iizuka, S.3    Tabuchi, M.4    Maruyama, H.5    Takeda, S.6
  • 17
    • 84867336104 scopus 로고    scopus 로고
    • NMR and pattern recognition methods in metabolomics: from data acquisition to biomarker discovery: a review
    • Smolinska A., Blanchet L., Buydens L.M.C., Wijmenga S.S. NMR and pattern recognition methods in metabolomics: from data acquisition to biomarker discovery: a review. Anal. Chim. Acta 2012, 750:82-97.
    • (2012) Anal. Chim. Acta , vol.750 , pp. 82-97
    • Smolinska, A.1    Blanchet, L.2    Buydens, L.M.C.3    Wijmenga, S.S.4
  • 18
    • 84900342981 scopus 로고    scopus 로고
    • NMR metabolomics of human blood and urine in disease research
    • Duarte I.F., Diaz S.O., Gil A.M. NMR metabolomics of human blood and urine in disease research. J. Pharm. Biomed. Anal. 2014, 93:17-26.
    • (2014) J. Pharm. Biomed. Anal. , vol.93 , pp. 17-26
    • Duarte, I.F.1    Diaz, S.O.2    Gil, A.M.3
  • 19
    • 84884413414 scopus 로고    scopus 로고
    • NMR-based metabolomics in human disease diagnosis: applications, limitations, and recommendations
    • Emwas A.-H.M., Salek R.M., Griffin J.L., Merzaban J. NMR-based metabolomics in human disease diagnosis: applications, limitations, and recommendations. Metabolomics 2013, 9:1048-1072.
    • (2013) Metabolomics , vol.9 , pp. 1048-1072
    • Emwas, A.-H.M.1    Salek, R.M.2    Griffin, J.L.3    Merzaban, J.4
  • 20
    • 39149126712 scopus 로고    scopus 로고
    • Metabolic profiling, metabolomic and metabonomic procedures for NMR spectroscopy of urine, plasma, serum and tissue extracts
    • Beckonert O., Keun H.C., Ebbels T.M.D., Bundy J., Holmes E., Lindon J.C., et al. Metabolic profiling, metabolomic and metabonomic procedures for NMR spectroscopy of urine, plasma, serum and tissue extracts. Nat. Protoc. 2007, 2:2692-2703.
    • (2007) Nat. Protoc. , vol.2 , pp. 2692-2703
    • Beckonert, O.1    Keun, H.C.2    Ebbels, T.M.D.3    Bundy, J.4    Holmes, E.5    Lindon, J.C.6
  • 21
    • 84931562865 scopus 로고    scopus 로고
    • Standardizing the experimental conditions for using urine in NMR-based metabolomic studies with a particular focus on diagnostic studies: a review
    • Emwas A.-H., Luchinat C., Turano P., Tenori L., Roy R., Salek R.M., et al. Standardizing the experimental conditions for using urine in NMR-based metabolomic studies with a particular focus on diagnostic studies: a review. Metabolomics 2014, 10.1007/s11306-014-0746-7.
    • (2014) Metabolomics
    • Emwas, A.-H.1    Luchinat, C.2    Turano, P.3    Tenori, L.4    Roy, R.5    Salek, R.M.6
  • 22
    • 80053395055 scopus 로고    scopus 로고
    • How the 1D-NOESY suppresses solvent signal in metabonomics NMR spectroscopy: an examination of the pulse sequence components and evolution
    • Mckay R.T. How the 1D-NOESY suppresses solvent signal in metabonomics NMR spectroscopy: an examination of the pulse sequence components and evolution. Concepts Magn. Reson. Part A 2011, 38A:197-220.
    • (2011) Concepts Magn. Reson. Part A , vol.38A , pp. 197-220
    • Mckay, R.T.1
  • 23
    • 77956446435 scopus 로고    scopus 로고
    • Major urinary protein regulation of chemical communication and nutrient metabolism
    • Elsevier Inc., Amsterdam, G. Litwack (Ed.)
    • Zhou Y., Rui L. Major urinary protein regulation of chemical communication and nutrient metabolism. Vitamins and Hormones 83 2010, 151-163. Elsevier Inc., Amsterdam. G. Litwack (Ed.).
    • (2010) Vitamins and Hormones 83 , pp. 151-163
    • Zhou, Y.1    Rui, L.2
  • 24
    • 33847534249 scopus 로고
    • Effects of diffusion on free precession in nuclear magnetic resonance experiments
    • Carr H., Purcell E. Effects of diffusion on free precession in nuclear magnetic resonance experiments. Phys. Rev. 1954, 94:630-638.
    • (1954) Phys. Rev. , vol.94 , pp. 630-638
    • Carr, H.1    Purcell, E.2
  • 25
    • 0002899752 scopus 로고
    • Modified spin-echo method for measuring nuclear relaxation times
    • Meiboom S., Gill D. Modified spin-echo method for measuring nuclear relaxation times. Rev. Sci. Instrum. 1958, 29:688-691.
    • (1958) Rev. Sci. Instrum. , vol.29 , pp. 688-691
    • Meiboom, S.1    Gill, D.2
  • 26
    • 36749114535 scopus 로고
    • Homonuclear broad band decoupling and two-dimensional J-resolved NMR spectroscopy
    • Aue W.P., Karhan J., Ernst R.R. Homonuclear broad band decoupling and two-dimensional J-resolved NMR spectroscopy. J. Chem. Phys. 1976, 64:4226-4227.
    • (1976) J. Chem. Phys. , vol.64 , pp. 4226-4227
    • Aue, W.P.1    Karhan, J.2    Ernst, R.R.3
  • 27
    • 73349091531 scopus 로고    scopus 로고
    • Two-dimensional J-resolved NMR spectroscopy: review of a key methodology in the metabolomics toolbox
    • Ludwig C., Viant M.R. Two-dimensional J-resolved NMR spectroscopy: review of a key methodology in the metabolomics toolbox. Phytochem. Anal. 2010, 21:22-32.
    • (2010) Phytochem. Anal. , vol.21 , pp. 22-32
    • Ludwig, C.1    Viant, M.R.2
  • 28
    • 15844388806 scopus 로고    scopus 로고
    • Suppression of strong coupling artefacts in J-spectra
    • Thrippleton M.J., Edden R.A.E., Keeler J. Suppression of strong coupling artefacts in J-spectra. J. Magn. Reson. 2005, 174:97-109.
    • (2005) J. Magn. Reson. , vol.174 , pp. 97-109
    • Thrippleton, M.J.1    Edden, R.A.E.2    Keeler, J.3
  • 29
    • 72249105551 scopus 로고    scopus 로고
    • Line-shape analysis of J-resolved NMR spectra: application to metabolomics and quantification of intensity errors from signal processing and high signal congestion
    • Parsons H.M., Ludwig C., Viant M.R. Line-shape analysis of J-resolved NMR spectra: application to metabolomics and quantification of intensity errors from signal processing and high signal congestion. Magn. Reson. Chem. 2009, 47(Suppl 1):S86-S95.
    • (2009) Magn. Reson. Chem. , vol.47 , pp. S86-S95
    • Parsons, H.M.1    Ludwig, C.2    Viant, M.R.3
  • 30
    • 84882490432 scopus 로고    scopus 로고
    • NMR spectroscopy techniques for application to metabonomics
    • Elsevier Science B.V., Amsterdam, J.C. Lindon, J.K. Nicholson, E. Holmes (Eds.)
    • Ross A., Schlotterbeck G., Dieterle F., Senn H. NMR spectroscopy techniques for application to metabonomics. Handb. Metabonomics Metabolomics 2007, 55-112. Elsevier Science B.V., Amsterdam. J.C. Lindon, J.K. Nicholson, E. Holmes (Eds.).
    • (2007) Handb. Metabonomics Metabolomics , pp. 55-112
    • Ross, A.1    Schlotterbeck, G.2    Dieterle, F.3    Senn, H.4
  • 31
    • 33745728718 scopus 로고    scopus 로고
    • Probabilistic quotient normalization as robust method to account for dilution of complex biological mixtures. Application in 1H NMR metabonomics
    • Dieterle F., Ross A., Schlotterbeck G., Senn H. Probabilistic quotient normalization as robust method to account for dilution of complex biological mixtures. Application in 1H NMR metabonomics. Anal. Chem. 2006, 78:4281-4290.
    • (2006) Anal. Chem. , vol.78 , pp. 4281-4290
    • Dieterle, F.1    Ross, A.2    Schlotterbeck, G.3    Senn, H.4
  • 35
    • 33947392610 scopus 로고    scopus 로고
    • Urine stability for metabolomic studies: effects of preparation and storage
    • Saude E., Sykes B. Urine stability for metabolomic studies: effects of preparation and storage. Metabolomics 2007, 3:19-27.
    • (2007) Metabolomics , vol.3 , pp. 19-27
    • Saude, E.1    Sykes, B.2
  • 38
    • 0014668762 scopus 로고
    • Brain lesions, obesity, and other disturbances in mice treated with monosodium glutamate
    • Olney J.W. Brain lesions, obesity, and other disturbances in mice treated with monosodium glutamate. Science 1969, 164:719-721.
    • (1969) Science , vol.164 , pp. 719-721
    • Olney, J.W.1
  • 39
    • 55449128579 scopus 로고    scopus 로고
    • Comparison of the obesity phenotypes related to monosodium glutamate effect on arcuate nucleus and/or the high fat diet feeding in C57BL/6 and NMRI mice
    • Matyšková R., Maletínská L., Maixnerová J., Pirník Z., Kiss A. Comparison of the obesity phenotypes related to monosodium glutamate effect on arcuate nucleus and/or the high fat diet feeding in C57BL/6 and NMRI mice. Physiol. Behav. 2008, 57:727-734.
    • (2008) Physiol. Behav. , vol.57 , pp. 727-734
    • Matyšková, R.1    Maletínská, L.2    Maixnerová, J.3    Pirník, Z.4    Kiss, A.5
  • 42
    • 33747337210 scopus 로고    scopus 로고
    • Effect of cholecystokinin on feeding is attenuated in monosodium glutamate obese mice
    • Maletínská L., Toma R.S., Pirnik Z., Kiss A., Slaninová J., Haluzík M., et al. Effect of cholecystokinin on feeding is attenuated in monosodium glutamate obese mice. Regul. Pept. 2006, 136:58-63.
    • (2006) Regul. Pept. , vol.136 , pp. 58-63
    • Maletínská, L.1    Toma, R.S.2    Pirnik, Z.3    Kiss, A.4    Slaninová, J.5    Haluzík, M.6
  • 44
    • 84938869867 scopus 로고    scopus 로고
    • (R2013a). Natick, Massachusetts: The MathWorks Inc
    • MATLAB version 8.1.0.604 (R2013a). Natick, Massachusetts: The MathWorks Inc., 2013.
    • (2013)
  • 45
    • 84863304598 scopus 로고    scopus 로고
    • R Foundation for Statistical Computing, Vienna, Austria
    • R Core Team R: A Language and Environment for Statistical Computing 2015, R Foundation for Statistical Computing, Vienna, Austria. http://www.R-project.org/.
    • (2015) R: A Language and Environment for Statistical Computing
  • 46
    • 84938855941 scopus 로고    scopus 로고
    • mratios: Inferences for ratios of coefficients in the general linear model. R package version 1.3.17.
    • G.D. Djira, M. Hasler, D. Gerhard, F. Schaarschmidt (2012). mratios: Inferences for ratios of coefficients in the general linear model. R package version 1.3.17. http://CRAN.R-project.org/package=mratios.
    • (2012)
    • Djira, G.D.1    Hasler, M.2    Gerhard, D.3    Schaarschmidt, F.4
  • 47
    • 84862287116 scopus 로고    scopus 로고
    • Investigating potential mechanisms of obesity by metabolomics
    • 805683
    • Xie B., Waters M.J., Schirra H.J. Investigating potential mechanisms of obesity by metabolomics. J. Biomed. Biotechnol. 2012, 2012. article ID 805683.
    • (2012) J. Biomed. Biotechnol. , vol.2012
    • Xie, B.1    Waters, M.J.2    Schirra, H.J.3
  • 48
    • 77956276702 scopus 로고    scopus 로고
    • Quantitative metabolomics by H NMR and LC-MS/MS confirms altered metabolic pathways in diabetes
    • e10538
    • Lanza I.R., Zhang S., Ward L.E., Karakelides H., Raftery D., Nair K.S. Quantitative metabolomics by H NMR and LC-MS/MS confirms altered metabolic pathways in diabetes. PLoS One 2010, 5:e10538.
    • (2010) PLoS One , vol.5
    • Lanza, I.R.1    Zhang, S.2    Ward, L.E.3    Karakelides, H.4    Raftery, D.5    Nair, K.S.6
  • 49
    • 0031832553 scopus 로고    scopus 로고
    • Proton nuclear magnetic resonance spectral profiles of urine in type II diabetic patients
    • Messana I., Forni F., Ferrari F., Rossi C., Giardina B., Zuppi C. Proton nuclear magnetic resonance spectral profiles of urine in type II diabetic patients. Clin. Chem. 1998, 44:1529-1534.
    • (1998) Clin. Chem. , vol.44 , pp. 1529-1534
    • Messana, I.1    Forni, F.2    Ferrari, F.3    Rossi, C.4    Giardina, B.5    Zuppi, C.6
  • 50
    • 0037163864 scopus 로고    scopus 로고
    • Physiological variation in metabolic phenotyping and functional genomic studies: use of orthogonal signal correction and PLS-DA
    • Gavaghan C.L., Wilson I.D., Nicholson J.K. Physiological variation in metabolic phenotyping and functional genomic studies: use of orthogonal signal correction and PLS-DA. FEBS Lett. 2002, 530:191-196.
    • (2002) FEBS Lett. , vol.530 , pp. 191-196
    • Gavaghan, C.L.1    Wilson, I.D.2    Nicholson, J.K.3
  • 51
    • 19544374744 scopus 로고    scopus 로고
    • A combined 1H NMR and HPLC-MS-based metabonomic study of urine from obese (fa/fa) Zucker and normal Wistar-derived rats
    • Williams R.E., Lenz E.M., Evans J.A., Wilson I.D., Granger J.H., Plumb R.S., et al. A combined 1H NMR and HPLC-MS-based metabonomic study of urine from obese (fa/fa) Zucker and normal Wistar-derived rats. J. Pharm. Biomed. Anal. 2005, 38:465-471.
    • (2005) J. Pharm. Biomed. Anal. , vol.38 , pp. 465-471
    • Williams, R.E.1    Lenz, E.M.2    Evans, J.A.3    Wilson, I.D.4    Granger, J.H.5    Plumb, R.S.6
  • 52
    • 0035881952 scopus 로고    scopus 로고
    • Investigations into biochemical changes due to diurnal variation and estrus cycle in female rats using high-resolution 1H NMR spectroscopy of urine and pattern recognition
    • Bollard M.E., Holmes E., Lindon J.C., Mitchell S.C., Branstetter D., Zhang W., et al. Investigations into biochemical changes due to diurnal variation and estrus cycle in female rats using high-resolution 1H NMR spectroscopy of urine and pattern recognition. Anal. Biochem. 2001, 295:194-202.
    • (2001) Anal. Biochem. , vol.295 , pp. 194-202
    • Bollard, M.E.1    Holmes, E.2    Lindon, J.C.3    Mitchell, S.C.4    Branstetter, D.5    Zhang, W.6
  • 53
    • 72249104695 scopus 로고    scopus 로고
    • NMR-based metabolomics of urine for the atherosclerotic mouse model using apolipoprotein-E deficient mice
    • Leo G.C., Darrow A.L. NMR-based metabolomics of urine for the atherosclerotic mouse model using apolipoprotein-E deficient mice. Magn. Reson. Chem. 2009, 47:S20-S25. Suppl 1.
    • (2009) Magn. Reson. Chem. , vol.47 , pp. S20-S25
    • Leo, G.C.1    Darrow, A.L.2
  • 54
    • 66449096802 scopus 로고    scopus 로고
    • Identification of MUP1 as a regulator for glucose and lipid metabolism in mice
    • Zhou Y., Jiang L., Rui L. Identification of MUP1 as a regulator for glucose and lipid metabolism in mice. J. Biol. Chem. 2009, 284:11152-11159.
    • (2009) J. Biol. Chem. , vol.284 , pp. 11152-11159
    • Zhou, Y.1    Jiang, L.2    Rui, L.3
  • 55
    • 67649774119 scopus 로고    scopus 로고
    • Major urinary protein-1 increases energy expenditure and improves glucose intolerance through enhancing mitochondrial function in skeletal muscle of diabetic mice
    • Hui X., Zhu W., Wang Y., Lam K.S.L., Zhang J., Wu D., et al. Major urinary protein-1 increases energy expenditure and improves glucose intolerance through enhancing mitochondrial function in skeletal muscle of diabetic mice. J. Biol. Chem. 2009, 284:14050-14057.
    • (2009) J. Biol. Chem. , vol.284 , pp. 14050-14057
    • Hui, X.1    Zhu, W.2    Wang, Y.3    Lam, K.S.L.4    Zhang, J.5    Wu, D.6
  • 56
    • 84878458278 scopus 로고    scopus 로고
    • Major urinary protein 5, a scent communication protein, is regulated by dietary restriction and subsequent re-feeding in mice
    • 20130101
    • Giller K., Huebbe P., Doering F., Pallauf K., Rimbach G. Major urinary protein 5, a scent communication protein, is regulated by dietary restriction and subsequent re-feeding in mice. Proc. Biol. Sci 2013, 280. article ID 20130101.
    • (2013) Proc. Biol. Sci , vol.280
    • Giller, K.1    Huebbe, P.2    Doering, F.3    Pallauf, K.4    Rimbach, G.5


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