-
1
-
-
67249138142
-
Pandemic potential of a strain of influenza a (h1n1): Early findings
-
Fraser, C. et al. Pandemic potential of a strain of influenza A (H1N1): early findings. Science 324, 155-156 (2009).
-
(2009)
Science
, vol.324
, pp. 155-156
-
-
Fraser, C.1
-
2
-
-
67650407532
-
Antigenic and genetic characteristics of swine-origin 2009a(h1n1) influenza viruses circulating in humans
-
Garten, R. J. et al. Antigenic and genetic characteristics of swine-origin 2009A(H1N1) influenza viruses circulating in humans. Science 325, 197-201 (2009).
-
(2009)
Science
, vol.325
, pp. 197-201
-
-
Garten, R.J.1
-
3
-
-
67649538978
-
Origins and evolutionary genomics of the 2009 swineorigin h1n1 influenza a epidemic
-
Smith, G. J. D. et al. Origins and evolutionary genomics of the 2009 swineorigin H1N1 influenza A epidemic. Nature 459, 1122-1126 (2009).
-
(2009)
Nature
, vol.459
, pp. 1122-1126
-
-
Smith, G.J.D.1
-
4
-
-
84873328721
-
The early molecular epidemiology of the swineorigin a/h1n1 human influenza pandemic
-
Rambaut, A. & Holmes, E. The early molecular epidemiology of the swineorigin A/H1N1 human influenza pandemic. PloS Curr. 1, RRN1003 (2009).
-
(2009)
PloS Curr
, vol.1
, pp. RRN1003
-
-
Rambaut, A.1
Holmes, E.2
-
5
-
-
79952140131
-
The early diversification of influenza a/h1n1pdm
-
Nelson, M. et al. The early diversification of influenza A/H1N1pdm. PloS Curr. 3, RRN1126 (2009).
-
(2009)
PloS Curr
, vol.3
, pp. RRN1126
-
-
Nelson, M.1
-
6
-
-
79960423085
-
Extensive geographical mixing of 2009 human h1n1 influenza a virus in a single university community
-
Holmes, E. C. et al. Extensive geographical mixing of 2009 human H1N1 influenza A virus in a single university community. J. Virol. 85, 6923-6929 (2011).
-
(2011)
J. Virol
, vol.85
, pp. 6923-6929
-
-
Holmes, E.C.1
-
7
-
-
84889074313
-
Global mortality estimates for the 2009 influenza pandemic from the glamor project: A modeling study
-
Simonsen, L. et al. Global mortality estimates for the 2009 influenza pandemic from the GLaMOR project: a modeling study. PLoS Med. 10, e1001558 (2013).
-
(2013)
PLoS Med
, vol.10
, pp. e1001558
-
-
Simonsen, L.1
-
8
-
-
78650639134
-
Phylogeography of the spring and fall waves of the h1n1/2009 pandemic influenza virus in the United States
-
Nelson, M. I. et al. Phylogeography of the spring and fall waves of the H1N1/2009 pandemic influenza virus in the United States. J. Virol. 85, 828-834 (2011).
-
(2011)
J. Virol
, vol.85
, pp. 828-834
-
-
Nelson, M.I.1
-
9
-
-
84863008174
-
Genetic characterization of human influenza viruses in the pandemic 2009-2010) and post-pandemic (2010-2011) periods in Japan
-
Dapat, I. C. et al. Genetic characterization of human influenza viruses in the pandemic (2009-2010) and post-pandemic (2010-2011) periods in Japan. PLoS ONE 7, e36455 (2012).
-
(2012)
PLoS ONE
, vol.7
, pp. e36455
-
-
Dapat, I.C.1
-
10
-
-
84855927073
-
Evolutionary dynamics of local pandemic h1n1/2009 influenza virus lineages revealed by whole-genome analysis
-
Baille, G. J. et al. Evolutionary dynamics of local pandemic H1N1/2009 influenza virus lineages revealed by whole-genome analysis. J. Virol. 86, 11-18 (2012).
-
(2012)
J. Virol
, vol.86
, pp. 11-18
-
-
Baille, G.J.1
-
11
-
-
84870557921
-
Molecular characterization of the predominant influenza a(h1n1)pdm09 virus in Mexico december 2011-February 2012
-
de la Rosa-Zamboni, D. et al. Molecular characterization of the predominant influenza A(H1N1)pdm09 virus in Mexico, December 2011-February 2012. PLoS ONE 7, e50116 (2012).
-
(2012)
PLoS ONE
, vol.7
, pp. e50116
-
-
De La Rosa-Zamboni, D.1
-
12
-
-
84869028711
-
Reconstruction of the evolutionary dynamics of the a(h1n1)pdm09 influenza viruses in Italy during the pandemic and postpandemic phases
-
Zehender, G. et al. Reconstruction of the evolutionary dynamics of the A(H1N1)pdm09 influenza viruses in Italy during the pandemic and postpandemic phases. PLoS ONE 7, e47517 (2012).
-
(2012)
PLoS ONE
, vol.7
, pp. e47517
-
-
Zehender, G.1
-
13
-
-
31344448218
-
Influenza pandemics of the 20th century
-
Kilbourne, E. D. Influenza pandemics of the 20th century. Emerg. Infect. Dis. 12, 9-14 (2006).
-
(2006)
Emerg. Infect. Dis
, vol.12
, pp. 9-14
-
-
Kilbourne, E.D.1
-
14
-
-
84892434226
-
Swine influenza
-
Shope, R. E. Swine Influenza. J. Exp. Med. 54, 373-385 (1931).
-
(1931)
J. Exp. Med
, vol.54
, pp. 373-385
-
-
Shope, R.E.1
-
15
-
-
0034701743
-
The epidemiology and evolution of influenza viruses in pigs
-
Brown, I. H. The epidemiology and evolution of influenza viruses in pigs. Vet. Microbiol. 74, 29-46 (2000).
-
(2000)
Vet. Microbiol
, vol.74
, pp. 29-46
-
-
Brown, I.H.1
-
16
-
-
79957602568
-
Long-term evolution and transmission dynamics of swine influenza a virus
-
Vijaykrishna, D. et al. Long-term evolution and transmission dynamics of swine influenza A virus. Nature 473, 519-522 (2011).
-
(2011)
Nature
, vol.473
, pp. 519-522
-
-
Vijaykrishna, D.1
-
17
-
-
67650866715
-
Dating the emergence of pandemic influenza viruses
-
Smith, G. J. D. et al. Dating the emergence of pandemic influenza viruses. Proc. Natl Acad. Sci. USA 106, 11709-11712 (2009).
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 11709-11712
-
-
Smith, G.J.D.1
-
19
-
-
84882778687
-
Real-time characterization of the molecular epidemiology of an influenza pandemic
-
Hedge, J., Lycett, S. J. & Rambaut, A. Real-time characterization of the molecular epidemiology of an influenza pandemic. Biol. Lett. 9, 5 (2013).
-
(2013)
Biol. Lett
, vol.9
, Issue.5
-
-
Hedge, J.1
Lycett, S.J.2
Rambaut, A.3
-
20
-
-
80053449514
-
Transmission characteristics of the 2009 h1n1 influenza pandemic: Comparison of 8 southern hemisphere countries
-
Opatowski, L. et al. Transmission characteristics of the 2009 H1N1 influenza pandemic: comparison of 8 Southern Hemisphere countries. PloS Pathog. 7, 9 (2011).
-
(2011)
PloS Pathog
, vol.7
, Issue.9
-
-
Opatowski, L.1
-
21
-
-
84907661333
-
Estimates of the reproductive number for seasonal, pandemic, and zoonotic influenza: A systematic review of the literature
-
Biggerstaff, M., Cauchemez, S., Reed, C., Gambhir, M. & Finelli, L. Estimates of the reproductive number for seasonal, pandemic, and zoonotic influenza: a systematic review of the literature. BMC Infect. Dis. 14, 480 (2014).
-
(2014)
BMC Infect. Dis
, vol.14
, pp. 480
-
-
Biggerstaff, M.1
Cauchemez, S.2
Reed, C.3
Gambhir, M.4
Finelli, L.5
-
22
-
-
73349125813
-
Early transmission characteristics of influenza a (h1n1)v in Australia: Victorian state, 16 may-3 june, 2009
-
McBryde, E. et al. Early transmission characteristics of influenza A (H1N1)v in Australia: Victorian state, 16 May-3 June, 2009. Euro. Surveill. 14, 42 (2009).
-
(2009)
Euro. Surveill
, vol.14
, pp. 42
-
-
McBryde, E.1
-
23
-
-
78049371003
-
On epidemic modeling in real time: An application to the 2009 novel a(h1n1) influenza outbreak in Canada
-
Hsieh, Y. H., Fisman, D. N. & Wu, J. On epidemic modeling in real time: an application to the 2009 novel A(H1N1) influenza outbreak in Canada. BMC Res. Notes 3, 283 (2010).
-
(2010)
BMC Res. Notes
, vol.3
, pp. 283
-
-
Hsieh, Y.H.1
Fisman, D.N.2
Wu, J.3
-
24
-
-
84868638651
-
The influence of climatic conditions on the transmission dynamics of the 2009a/h1n1 influenza pandemic in Chile
-
Chowell, G. et al. The influence of climatic conditions on the transmission dynamics of the 2009A/H1N1 influenza pandemic in Chile. BMC Infect. Dis. 12, 298 (2012).
-
(2012)
BMC Infect. Dis
, vol.12
, pp. 298
-
-
Chowell, G.1
-
25
-
-
77958514555
-
The effective reproductive number of pandemic influenza: Prospective estimation
-
Cowling, B. J. et al. The effective reproductive number of pandemic influenza: prospective estimation. Epidemiology 21, 842-846 (2010).
-
(2010)
Epidemiology
, vol.21
, pp. 842-846
-
-
Cowling, B.J.1
-
26
-
-
70249099921
-
Epidemiology and control of influenza a (h1n1)v in the netherlands: The first 115 cases
-
Hahne, S. et al. Epidemiology and control of influenza A (H1N1)v in the Netherlands: the first 115 cases. Euro. Surveill. 14, 27 (2009).
-
(2009)
Euro. Surveill
, vol.14
, pp. 27
-
-
Hahne, S.1
-
27
-
-
84869214371
-
Reproductive number and serial interval of the first wave of influenza a(h1n1)pdm09 virus in South Africa
-
Archer, B. N., Tempia, S., White, L. F., Pagano, M. & Cohen, C. Reproductive number and serial interval of the first wave of influenza A(H1N1)pdm09 virus in South Africa. PLoS ONE 7, e49482 (2012).
-
(2012)
PLoS ONE
, vol.7
, pp. e49482
-
-
Archer, B.N.1
Tempia, S.2
White, L.F.3
Pagano, M.4
Cohen, C.5
-
28
-
-
11144334667
-
Transmissibility of 1918 pandemic influenza
-
Mills, C. D., Robins, J. M. & Lipstich, M. Transmissibility of 1918 pandemic influenza. Nature 432, 904-906 (2004).
-
(2004)
Nature
, vol.432
, pp. 904-906
-
-
Mills, C.D.1
Robins, J.M.2
Lipstich, M.3
-
29
-
-
33745626761
-
Transmission dynamics of the great influenza pandemic of 1918 in geneva Switzerland: Assessing the effects of hypothetical interventions
-
Chowell, G., Ammon, C. E., Hengartner, N. W. & Hyman, J. M. Transmission dynamics of the great influenza pandemic of 1918 in Geneva, Switzerland: assessing the effects of hypothetical interventions. J. Theor. Biol. 241, 193-204 (2006).
-
(2006)
J. Theor. Biol
, vol.241
, pp. 193-204
-
-
Chowell, G.1
Ammon, C.E.2
Hengartner, N.W.3
Hyman, J.M.4
-
30
-
-
33846205243
-
Transmissibility and mortality impact of epidemic and pandemic influenza, with emphasis on the unusually deadly 1951 epidemic
-
Viboud, C. et al. Transmissibility and mortality impact of epidemic and pandemic influenza, with emphasis on the unusually deadly 1951 epidemic. Vaccine 24, 6701-6707 (2006).
-
(2006)
Vaccine
, vol.24
, pp. 6701-6707
-
-
Viboud, C.1
-
31
-
-
39149106141
-
Epidemiologic characterization of the 1918 influenza pandemic summer wave in copenhagen: Implications for pandemic control strategies
-
Andresen, V., Viboud, C. & Simonsen, L. Epidemiologic characterization of the 1918 influenza pandemic summer wave in Copenhagen: implications for pandemic control strategies. J. Infect. Dis. 197, 270-278 (2008).
-
(2008)
J. Infect. Dis
, vol.197
, pp. 270-278
-
-
Andresen, V.1
Viboud, C.2
Simonsen, L.3
-
32
-
-
38049187620
-
Analyses of the 1957 (asian) influenza pandemic in the United Kingdom and the impact of school closure
-
Vynnychy, E. & Edmunds, W. J. Analyses of the 1957 (Asian) influenza pandemic in the United Kingdom and the impact of school closure. Epidemiol. Infect. 136, 166-179 (2008).
-
(2008)
Epidemiol. Infect
, vol.136
, pp. 166-179
-
-
Vynnychy, E.1
Edmunds, W.J.2
-
33
-
-
1642462098
-
Containing pandemic influenza with antiviral agents
-
Longini, Jr. I. R., Halloran, K. E., Nizam, A. & Yang, Y. Containing pandemic influenza with antiviral agents. Am. J. Epidemiol. 159, 623-633 (2004).
-
(2004)
Am. J. Epidemiol
, vol.159
, pp. 623-633
-
-
Longini, I.R.1
Halloran, K.E.2
Nizam, A.3
Yang, Y.4
-
34
-
-
76649107662
-
Estimates of the transmissibility of the 1968 (Hong Kong) influenza pandemic: Evidence of increased transmissibility between successive waves
-
Jackson, C., Vynncky, E. & Mangtani, P. Estimates of the transmissibility of the 1968 (Hong Kong) influenza pandemic: evidence of increased transmissibility between successive waves. Am. J. Epidemiol. 171, 465-478 (2009).
-
(2009)
Am. J. Epidemiol
, vol.171
, pp. 465-478
-
-
Jackson, C.1
Vynncky, E.2
Mangtani, P.3
-
35
-
-
42149139969
-
Seasonal influenza in the united states france, and Australia: Transmission and prospects for control
-
Chowell, G., Miller, M. A. & Viboud, C. Seasonal influenza in the United States, France, and Australia: transmission and prospects for control. Epidemiol. Infect. 136, 852-864 (2008).
-
(2008)
Epidemiol. Infect
, vol.136
, pp. 852-864
-
-
Chowell, G.1
Miller, M.A.2
Viboud, C.3
-
37
-
-
77649176948
-
Predicting the antigenic structure of the pandemic (h1n1) 2009 influenza virus hemagglutinin
-
Igarashi, M. et al. Predicting the antigenic structure of the pandemic (H1N1) 2009 influenza virus hemagglutinin. PLoS ONE 5, e8553 (2010).
-
(2010)
PLoS ONE
, vol.5
, pp. e8553
-
-
Igarashi, M.1
-
38
-
-
17744396121
-
Not so different after all: A comparison of methods for detecting amino acid sites under selection
-
Kosakovsky, P. S. L. & Frost, S. D. W. Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol. Biol. Evol. 22, 1208-1222 (2005).
-
(2005)
Mol. Biol. Evol
, vol.22
, pp. 1208-1222
-
-
Kosakovsky, P.S.L.1
Frost, S.D.W.2
-
39
-
-
84982179834
-
Relax detecting relaxed selection in a phylogenetic framework
-
Wertheim, J. O., Murrell, B., Smith, M. D., Pond, S. L. K. & Scheffler, K. RELAX: detecting relaxed selection in a phylogenetic framework. Mol. Biol. Evol. 32, 820-832 (2015).
-
(2015)
Mol. Biol. Evol
, vol.32
, pp. 820-832
-
-
Wertheim, J.O.1
Murrell, B.2
Smith, M.D.3
Pond, S.L.K.4
Scheffler, K.5
-
40
-
-
84866181427
-
Functional balance of the hemagglutinin and neuraminidase activities accompanies the emergence of the 2009 h1n1 influenza pandemic
-
Xu, R. et al. Functional balance of the hemagglutinin and neuraminidase activities accompanies the emergence of the 2009 H1N1 influenza pandemic. J. Virol. 86, 9221-9232 (2012).
-
(2012)
J. Virol
, vol.86
, pp. 9221-9232
-
-
Xu, R.1
-
41
-
-
84881237033
-
Molecular basis for broad neuraminidase immunity: Conserved epitopes in seasonal and pandemic h1n1 as well as h5n1 influenza viruses
-
Wan, H. et al. Molecular basis for broad neuraminidase immunity: conserved epitopes in seasonal and pandemic H1N1 as well as H5N1 influenza viruses. J. Virol. 87, 9290-9300 (2013).
-
(2013)
J. Virol
, vol.87
, pp. 9290-9300
-
-
Wan, H.1
-
42
-
-
33847649474
-
Phylogenetic evidence for deleterious mutation load in RNA viruses and its contribution to viral evolution
-
Pybus, O. G. et al. Phylogenetic evidence for deleterious mutation load in RNA viruses and its contribution to viral evolution. Mol. Biol. Evol. 24, 845-852 (2007).
-
(2007)
Mol. Biol. Evol
, vol.24
, pp. 845-852
-
-
Pybus, O.G.1
-
43
-
-
16344378246
-
Bayes empirical bayes inference of amino acid sites under positive selection
-
Yang, Z. H., Wong, W. S. W. & Nielsen, R. Bayes empirical Bayes inference of amino acid sites under positive selection. Mol. Biol. Evol. 22, 1107-1118 (2005).
-
(2005)
Mol. Biol. Evol
, vol.22
, pp. 1107-1118
-
-
Yang, Z.H.1
Wong, W.S.W.2
Nielsen, R.3
-
44
-
-
84864605220
-
Detecting individual sites subject to episodic diversifying selection
-
Murrell, B. et al. Detecting individual sites subject to episodic diversifying selection. PloS Genet. 8, e1002764 (2012).
-
(2012)
PloS Genet
, vol.8
, pp. e1002764
-
-
Murrell, B.1
-
45
-
-
78651488739
-
Broadly cross-reactive antibodies dominate the human b cell response against 2009 pandemic h1n1 influenza virus infection
-
Wrammert, J. et al. Broadly cross-reactive antibodies dominate the human B cell response against 2009 pandemic H1N1 influenza virus infection. J. Exp. Med. 208, 181-193 (2011).
-
(2011)
J. Exp. Med
, vol.208
, pp. 181-193
-
-
Wrammert, J.1
-
46
-
-
84888024210
-
Substitutions near the receptor binding site determine major antigenic change during influenza virus evolution
-
Koel, B. F. et al. Substitutions near the receptor binding site determine major antigenic change during influenza virus evolution. Science 342, 976-979 (2013).
-
(2013)
Science
, vol.342
, pp. 976-979
-
-
Koel, B.F.1
-
47
-
-
84924811650
-
Identification of amino acid substitutions supporting antigenic change of influenza a(h1n1)pdm09 viruses
-
Koel, B. F. et al. Identification of amino acid substitutions supporting antigenic change of influenza A(H1N1)pdm09 viruses. J. Virol. 89, 3763-3775 (2015).
-
(2015)
J. Virol
, vol.89
, pp. 3763-3775
-
-
Koel, B.F.1
-
48
-
-
36749089409
-
Counting labeled transitions in continuous-time markov models of evolution
-
Minin, V. N. & Suchard, M. A. Counting labeled transitions in continuous-time Markov models of evolution. J. Math. Biol. 56, 391-412 (2008).
-
(2008)
J. Math. Biol
, vol.56
, pp. 391-412
-
-
Minin, V.N.1
Suchard, M.A.2
-
50
-
-
84988711997
-
Decline in temperature and humidity increases the occurrence of influenza in cold climate
-
Jaakkola, K. et al. Decline in temperature and humidity increases the occurrence of influenza in cold climate. Environ. Health 13, 22 (2014).
-
(2014)
Environ. Health
, vol.13
, Issue.22
-
-
Jaakkola, K.1
-
51
-
-
44449164435
-
The genomic and epidemiological dynamics of human influenza a virus
-
Rambaut, A. et al. The genomic and epidemiological dynamics of human influenza A virus. Nature 453, 615-619 (2008).
-
(2008)
Nature
, vol.453
, pp. 615-619
-
-
Rambaut, A.1
-
52
-
-
84928575559
-
Diversifying selection analysis predicts antigenic evolution of 2009 pandemic h1n1 influenza a virus in humans
-
Lee, A. J. et al. Diversifying selection analysis predicts antigenic evolution of 2009 pandemic H1N1 influenza A virus in humans. J. Virol. 89, 5427-5440 (2015).
-
(2015)
J. Virol
, vol.89
, pp. 5427-5440
-
-
Lee, A.J.1
-
53
-
-
84900854018
-
Viral determinants of influenza a virus host range
-
Cauldwell, A. V., Long, J. S., Moncorge, O. & Barclay, W. S. Viral determinants of influenza A virus host range. J. Gen. Virol. 95, 1193-1210 (2014).
-
(2014)
J. Gen. Virol
, vol.95
, pp. 1193-1210
-
-
Cauldwell, A.V.1
Long, J.S.2
Moncorge, O.3
Barclay, W.S.4
-
54
-
-
79955431205
-
Impact of amino acid mutations in pb2 pb1-f2 and ns1 on the replication and pathogenicity of pandemic (h1n1) 2009 influenza viruses
-
Ozawa, M. et al. Impact of amino acid mutations in PB2, PB1-F2, and NS1 on the replication and pathogenicity of pandemic (H1N1) 2009 influenza viruses. J. Virol. 85, 4596-4601 (2011).
-
(2011)
J. Virol
, vol.85
, pp. 4596-4601
-
-
Ozawa, M.1
-
55
-
-
79960414052
-
Pa residues in the 2009 h1n1 pandemic influenza virus enhance avian influenza virus polymerase activity in mammalian cells
-
Bussey, K. A. et al. PA residues in the 2009 H1N1 pandemic influenza virus enhance avian influenza virus polymerase activity in mammalian cells. J. Virol. 85, 7020-7028 (2011).
-
(2011)
J. Virol
, vol.85
, pp. 7020-7028
-
-
Bussey, K.A.1
-
56
-
-
84898662125
-
Identification, characterization, and natural selection of mutations driving airborne transmission of a/h5n1 virus
-
Linster, M. et al. Identification, characterization, and natural selection of mutations driving airborne transmission of A/H5N1 virus. Cell 157, 329-339.
-
Cell
, vol.157
, pp. 329-339
-
-
Linster, M.1
-
57
-
-
84875145733
-
Defining influenza a virus hemagglutinin antigenic drift by sequential monoclonal antibody selection
-
Das, S. R. et al. Defining influenza A virus hemagglutinin antigenic drift by sequential monoclonal antibody selection. Cell Host Microbe 13, 314-323 (2013).
-
(2013)
Cell Host Microbe
, vol.13
, pp. 314-323
-
-
Das, S.R.1
-
58
-
-
84880558705
-
Glycosylations in the globular head of the hemagglutinin protein modulate the virulence and antigenic properties of the h1n1 influenza viruses
-
Medina, R. et al. Glycosylations in the globular head of the hemagglutinin protein modulate the virulence and antigenic properties of the H1N1 influenza viruses. Sci. Transl. Med. 5, 187ra70 (2013).
-
(2013)
Sci. Transl. Med
, vol.5
, pp. 187ra70
-
-
Medina, R.1
-
59
-
-
84899553363
-
Raxml version 8: A tool for phylogenetic analysis and postanalysis of large phylogenies
-
Stamatakis, A. RAxML version 8: a tool for phylogenetic analysis and postanalysis of large phylogenies. Bioinformatics 30, 1321-1323 (2014).
-
(2014)
Bioinformatics
, vol.30
, pp. 1321-1323
-
-
Stamatakis, A.1
-
60
-
-
77957233168
-
Datamonkey 2010: A suite of phylogenetic analysis tools for evolutionary biology
-
Delport, W., Poon, A. F., Frost, S. D. W. & Kosakovsky, P. S. L. Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics 26, 2455-2457 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 2455-2457
-
-
Delport, W.1
Poon, A.F.2
Frost, S.D.W.3
Kosakovsky, P.S.L.4
-
61
-
-
34547803197
-
Paml 4: Phylogenetic analysis by maximum likelihood
-
Yang, Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24, 1586-1591 (2007).
-
(2007)
Mol. Biol. Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
62
-
-
78349263426
-
A computational framework for influenza antigenic cartography
-
Cai, Z., Zhang, T. & Wan, X.-F. A computational framework for influenza antigenic cartography. PloS Comp. Biol. 6, e1000949 (2010).
-
(2010)
PloS Comp. Biol
, vol.6
, pp. e1000949
-
-
Cai, Z.1
Zhang, T.2
Wan, X.-F.3
-
63
-
-
45849122039
-
Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics
-
Minin, V. N., Bloomquist, E. W. & Suchard, M. A. Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics. Mol. Biol. Evol. 25, 1459-1471 (2008).
-
(2008)
Mol. Biol. Evol
, vol.25
, pp. 1459-1471
-
-
Minin, V.N.1
Bloomquist, E.W.2
Suchard, M.A.3
-
64
-
-
84864530626
-
Bayesian phylogenetics with beauti and the beast 1.7
-
Drummond, A. J., Suchard, M. A., Xie, D. & Rambaut, A. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol. Biol. Evol. 29, 1969-1973 (2012).
-
(2012)
Mol. Biol. Evol
, vol.29
, pp. 1969-1973
-
-
Drummond, A.J.1
Suchard, M.A.2
Xie, D.3
Rambaut, A.4
-
65
-
-
28944450584
-
Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences
-
Shapiro, B., Rambaut, A. & Drummond, A. J. Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences. Mol. Biol. Evol. 23, 7-9 (2006).
-
(2006)
Mol. Biol. Evol
, vol.23
, pp. 7-9
-
-
Shapiro, B.1
Rambaut, A.2
Drummond, A.J.3
-
66
-
-
70349675664
-
Bayesian phylogeography finds its roots
-
Lemey, P., Rambaut, A., Drummond, A. J. & Suchard, M. A. Bayesian phylogeography finds its roots. PloS Comp. Biol. 5, e1000520 (2009).
-
(2009)
PloS Comp. Biol
, vol.5
, pp. e1000520
-
-
Lemey, P.1
Rambaut, A.2
Drummond, A.J.3
Suchard, M.A.4
-
67
-
-
84895733259
-
Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza h3n2
-
Lemey, P. et al. Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2. PloS Pathog. 10, e1003932 (2014).
-
(2014)
PloS Pathog
, vol.10
, pp. e1003932
-
-
Lemey, P.1
-
68
-
-
42349094829
-
The global circulation of seasonal influenza a(h3n2) viruses
-
Russell, C. A. et al. The global circulation of seasonal influenza A(H3N2) viruses. Science 320, 340-346 (2008).
-
(2008)
Science
, vol.320
, pp. 340-346
-
-
Russell, C.A.1
-
69
-
-
77954076631
-
Global migration dynamics underlie evolution and persistence of human influenza a (h3n2
-
Bedford, T., Cobey, S., Beerli, P. & Pascual, M. Global migration dynamics underlie evolution and persistence of human influenza A (H3N2). PloS Pathog. 6, e1000918 (2010).
-
(2010)
PloS Pathog
, vol.6
, pp. e1000918
-
-
Bedford, T.1
Cobey, S.2
Beerli, P.3
Pascual, M.4
-
70
-
-
82755190600
-
Temporally structured metapopulation dynamics and persistence of influenza a h3n2 virus in humans
-
Bahl, J. et al. Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans. Proc. Natl Acad. Sci. USA 108, 19359-19364 (2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 19359-19364
-
-
Bahl, J.1
|