-
1
-
-
65249188436
-
Swine influenza a(h1n1) infection in two children-southern california, march-April 2009
-
Centers for disease control and prevention
-
Centers for disease control and prevention. 2009 Swine influenza A(H1N1) infection in two children-Southern California, March-April 2009. Morb. Mortal. Wkly Rep. 58, 400-402.
-
(2009)
Morb. Mortal. Wkly Rep
, vol.58
, pp. 400-402
-
-
-
2
-
-
67249138142
-
Pandemic potential of a strain of influenza a (h1n1): Early findings
-
(doi:10.1126/science.1176062
-
Fraser C et al. 2009 Pandemic potential of a strain of influenza A (H1N1): early findings. Science 324, 1557-1561. (doi:10.1126/science.1176062)
-
(2009)
Science
, vol.324
, pp. 1557-1561
-
-
Fraser, C.1
-
3
-
-
67649538978
-
Origins and evolutionary genomics of the 2009 swine-origin h1n1 influenza a epidemic
-
(doi:10.1038/nature08182
-
Smith GJD et al. 2009 Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic. Nature 459, 1122-1125. (doi:10.1038/nature08182)
-
(2009)
Nature
, vol.459
, pp. 1122-1125
-
-
Smith, G.J.D.1
-
4
-
-
0346373759
-
Unifying the epidemiological and evolutionary dynamics of pathogens
-
(doi:10.1126/science.1090727
-
Grenfell BT, Pybus OG, Gog JR, Wood JLN, Daly JM, Mumford JA, Holmes EC. 2004 Unifying the epidemiological and evolutionary dynamics of pathogens. Science 303, 327-332. (doi:10.1126/science.1090727)
-
(2004)
Science
, vol.303
, pp. 327-332
-
-
Grenfell, B.T.1
Pybus, O.G.2
Gog, J.R.3
Wood, J.L.N.4
Daly, J.M.5
Mumford, J.A.6
Holmes, E.C.7
-
5
-
-
84873328721
-
The early molecular epidemiology of the swine-origin a/h1n1 human influenza pandemic
-
doi:10. 1371/currents.RRN1003
-
Rambaut A, Holmes E. 2009 The early molecular epidemiology of the swine-origin A/H1N1 human influenza pandemic. PLoS Curr. 1, RRN1003. (doi:10. 1371/currents.RRN1003)
-
(2009)
PLoS Curr
, vol.1
-
-
Rambaut, A.1
Holmes, E.2
-
6
-
-
84865071427
-
Inferring pandemic growth rates from sequence data
-
doi:10.1098/rsif. 2011.0850
-
de Silva E, Ferguson NM, Fraser C. 2012 Inferring pandemic growth rates from sequence data. J. R. Soc. Interface 9, 1797-1808. (doi:10.1098/rsif. 2011.0850)
-
(2012)
J. R. Soc. Interface
, vol.9
, pp. 1797-1808
-
-
De Silva, E.1
Ferguson, N.M.2
Fraser, C.3
-
7
-
-
38649110663
-
Beast: Bayesian evolutionary analysis by sampling trees
-
doi:10.1186/1471-2148-7-214
-
Drummond AJ, Rambaut A. 2007 BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7, 214. (doi:10.1186/1471-2148-7-214)
-
(2007)
BMC Evol. Biol
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
8
-
-
84864530626
-
Bayesian phylogenetics with beauti and the beast 1.7
-
doi:10. 1093/molbev/mss075
-
Drummond AJ, Suchard MA, Xie D, Rambaut A. 2012 Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol. Biol. Evol. 29, 1969-1973. (doi:10. 1093/molbev/mss075)
-
(2012)
Mol. Biol. Evol
, vol.29
, pp. 1969-1973
-
-
Drummond, A.J.1
Suchard, M.A.2
Xie, D.3
Rambaut, A.4
-
9
-
-
84555188616
-
Beagle: An application programming interface and high-performance computing library for statistical phylogenetics
-
(doi:10.1093/sysbio/syr100
-
Ayres DL et al. 2012 BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics. Syst. Biol. 61, 170-173. (doi:10.1093/sysbio/syr100)
-
(2012)
Syst. Biol
, vol.61
, pp. 170-173
-
-
Ayres, D.L.1
-
10
-
-
33344465800
-
Relaxed phylogenetics and dating with confidence
-
doi:10.1371/journal. pbio.0040088
-
Drummond AJ, Ho SYW, Phillips MJ, Rambaut A. 2006 Relaxed phylogenetics and dating with confidence. PLoS Biol. 4, e88. (doi:10.1371/journal. pbio.0040088)
-
(2006)
PLoS Biol
, vol.4
-
-
Drummond, A.J.1
Ho, S.Y.W.2
Phillips, M.J.3
Rambaut, A.4
-
11
-
-
84865475040
-
Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty
-
(doi:10.1093/molbev/mss084
-
Baele G, Lemey P, Bedford T, Rambaut A, Suchard MA, Alekseyenko AV. 2012 Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty. Mol. Biol. Evol. 29, 2157-2167. (doi:10.1093/molbev/mss084)
-
(2012)
Mol. Biol. Evol
, vol.29
, pp. 2157-2167
-
-
Baele, G.1
Lemey, P.2
Bedford, T.3
Rambaut, A.4
Suchard, M.A.5
Alekseyenko, A.V.6
-
12
-
-
45849122039
-
Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics
-
(doi:10.1093/molbev/msn090
-
Minin VN, Bloomquist EW, Suchard MA. 2008 Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics. Mol. Biol. Evol. 25, 1459-1471. (doi:10.1093/molbev/msn090)
-
(2008)
Mol. Biol. Evol
, vol.25
, pp. 1459-1471
-
-
Minin, V.N.1
Bloomquist, E.W.2
Suchard, M.A.3
-
13
-
-
0028782096
-
Sampling theory for neutral alleles in a varying environment
-
(doi101098/rstb19940079
-
Griffiths RC, Tavaré S. 1994 Sampling theory for neutral alleles in a varying environment. Phil. Trans. R. Soc. Lond. B 344, 403-410. (doi:10.1098/rstb.1994.0079)
-
(1994)
Phil. Trans. R. Soc. Lond
, vol.B 344
, pp. 403-410
-
-
Griffiths, R.C.1
Tavaré, S.2
-
14
-
-
33847649474
-
Phylogenetic evidence for deleterious mutation load in rna viruses and its contribution to viral evolution
-
(doi:10.1093/molbev/msm001
-
Pybus OG, Rambaut A, Belshaw R, Freckleton RP, Drummond AJ, Holmes EC. 2007 Phylogenetic evidence for deleterious mutation load in RNA viruses and its contribution to viral evolution. Mol. Biol. Evol. 24, 845-852. (doi:10.1093/molbev/msm001)
-
(2007)
Mol. Biol. Evol
, vol.24
, pp. 845-852
-
-
Pybus, O.G.1
Rambaut, A.2
Belshaw, R.3
Freckleton, R.P.4
Drummond, A.J.5
Holmes, E.C.6
-
16
-
-
34249951995
-
How generation intervals shape the relationship between growth rates and reproductive numbers
-
(doi101098/rspb2006 3754
-
Wallinga J, Lipsitch M. 2007 How generation intervals shape the relationship between growth rates and reproductive numbers. Proc. R. Soc. B 274, 599-604. (doi:10.1098/rspb.2006.3754)
-
(2007)
Proc. R. Soc
, vol.B 274
, pp. 599-604
-
-
Wallinga, J.1
Lipsitch, M.2
-
17
-
-
44849101593
-
Mathematical models of infectious disease transmission
-
(doi:10.1038/nrmicro1845
-
Grassly N, Fraser C. 2008 Mathematical models of infectious disease transmission. Nat. Rev. Microbiol. 6, 477-487. (doi:10.1038/nrmicro1845)
-
(2008)
Nat. Rev. Microbiol
, vol.6
, pp. 477-487
-
-
Grassly, N.1
Fraser, C.2
-
18
-
-
74049109693
-
Household transmission of 2009 pandemic influenza a (h1n1) virus in the united states
-
(doi:10.1056/NEJMoa0905498
-
Cauchemez S, Donnelly CA, Reed C, Ghani AC, Fraser C, Kent CK, Finelli L, Ferguson NM. 2009 Household transmission of 2009 pandemic influenza A (H1N1) virus in the United States. N. Engl. J. Med. 361, 2619-27. (doi:10.1056/ NEJMoa0905498)
-
(2009)
N. Engl. J. Med
, vol.361
, pp. 2619-2627
-
-
Cauchemez, S.1
Donnelly, C.A.2
Reed, C.3
Ghani, A.C.4
Fraser, C.5
Kent, C.K.6
Finelli, L.7
Ferguson, N.M.8
-
19
-
-
70449441301
-
Estimation of the reproductive number and the serial interval in early phase of the 2009 influenza a/h1n1 pandemic in the usa. Influenza other respir
-
(doi101111/j1750-2659200900106x
-
White LF, Wallinga J, Finelli L, Reed C, Riley S, Lipsitch M, Pagano M. 2009 Estimation of the reproductive number and the serial interval in early phase of the 2009 influenza A/H1N1 pandemic in the USA. Influenza Other Respir. Viruses 3, 267-276. (doi:10.1111/j.1750-2659.2009.00106.x)
-
(2009)
Viruses
, vol.3
, pp. 267-276
-
-
White, L.F.1
Wallinga, J.2
Finelli, L.3
Reed, C.4
Riley, S.5
Lipsitch, M.6
Pagano, M.7
-
20
-
-
77949905504
-
Estimated epidemiologic parameters and morbidity associated with pandemic h1n1 influenza
-
(doi:10.1503/cmaj.091807
-
Tuite AR et al. 2010 Estimated epidemiologic parameters and morbidity associated with pandemic H1N1 influenza. CMAJ 182, 131-136. (doi:10.1503/cmaj. 091807)
-
(2010)
CMAJ
, vol.182
, pp. 131-136
-
-
Tuite, A.R.1
-
21
-
-
17744381574
-
Bayesian coalescent inference of past population dynamics from molecular sequences
-
(doi:10.1093/molbev/msi103
-
Drummond AJ, Rambaut A, Shapiro B, Pybus OG. 2005 Bayesian coalescent inference of past population dynamics from molecular sequences. Mol. Biol. Evol. 22, 1185-1192. (doi:10.1093/molbev/msi103)
-
(2005)
Mol. Biol. Evol
, vol.22
, pp. 1185-1192
-
-
Drummond, A.J.1
Rambaut, A.2
Shapiro, B.3
Pybus, O.G.4
-
22
-
-
71549158510
-
Phylodynamics of infectious disease epidemics
-
(doi:10.1534/genetics.109.106021
-
Volz EM, Kosakovsky Pond SL, Ward MJ, Leigh Brown AJ, Frost SDW. 2009 Phylodynamics of infectious disease epidemics. Genetics 183, 1421-1430. (doi:10.1534/genetics.109.106021)
-
(2009)
Genetics
, vol.183
, pp. 1421-1430
-
-
Volz, E.M.1
Kosakovsky Pond, S.L.2
Ward, M.J.3
Leigh Brown, A.J.4
Frost, S.D.W.5
-
23
-
-
84871983084
-
Birth-death skyline plot reveals temporal changes of epidemic spread in hiv and hepatitis c virus (hcv)
-
(doi:10.1073/pnas.1207965110
-
Stadler T, Kuhnert D, Bonhoeffer S, Drummond AJ. 2013 Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV). Proc. Natl Acad. Sci. USA 110, 228-233. (doi:10.1073/pnas.1207965110)
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 228-233
-
-
Stadler, T.1
Kuhnert, D.2
Bonhoeffer, S.3
Drummond, A.J.4
-
24
-
-
80052336720
-
Inference for nonlinear epidemiological models using genealogies and time series
-
doi:10.1371/journal. pcbi.1002136
-
Rasmussen DA, Ratmann O, Koelle K. 2011 Inference for nonlinear epidemiological models using genealogies and time series. PLoS Comput. Biol. 7, e1002136. (doi:10.1371/journal. pcbi.1002136)
-
(2011)
PLoS Comput. Biol
, vol.7
-
-
Rasmussen, D.A.1
Ratmann, O.2
Koelle, K.3
-
25
-
-
84880482950
-
Coalescent inference for infectious disease: Meta-Analysis of hepatitis c
-
doi:10.1098/rstb.2012.0314
-
Dearlove B, Wilson DJ. 2013 Coalescent inference for infectious disease: meta-Analysis of hepatitis C. Phil. Trans. R. Soc. B 368, 20120314. (doi:10.1098/rstb. 2012.0314)
-
(2013)
Phil. Trans. R. Soc
, vol.B 368
, pp. 20120314
-
-
Dearlove, B.1
Wilson, D.J.2
|