-
1
-
-
33748792021
-
Bio-ontologies: current trends and future directions
-
Bodenreider O, Stevens R. Bio-ontologies: current trends and future directions. Brief Bioinform. 2006; 7(3):256-74.
-
(2006)
Brief Bioinform
, vol.7
, Issue.3
, pp. 256-274
-
-
Bodenreider, O.1
Stevens, R.2
-
3
-
-
27344435774
-
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A. 1554; 102(43):5-50.
-
(1554)
Proc Natl Acad Sci U S A
, vol.102
, Issue.43
, pp. 5-50
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
-
4
-
-
84856521305
-
Recent advances in schema and ontology evolution
-
Springer
-
Hartung M, Terwilliger JF, Rahm E. Recent advances in schema and ontology evolution. In: Schema matching and mapping. Springer: 2011. p. 149-90. http://link.springer.com/chapter/10.1007/978-3-642-16518-4_6.
-
(2011)
Schema matching and mapping
, pp. 149-190
-
-
Hartung, M.1
Terwilliger, J.F.2
Rahm, E.3
-
5
-
-
84873151689
-
Measuring the level of activity in community built bio-ontologies
-
Malone J, Stevens R. Measuring the level of activity in community built bio-ontologies. J Biomed Inform. 2013; 46:5-14.
-
(2013)
J Biomed Inform
, vol.46
, pp. 5-14
-
-
Malone, J.1
Stevens, R.2
-
6
-
-
57349138424
-
Supporting collaborative ontology development in Protégé
-
Springer
-
Tudorache T, Noy NF, Tu S, Musen MA. Supporting collaborative ontology development in Protégé. In: The Semantic Web-ISWC. Springer: 2008. p. 17-32. http://link.springer.com/chapter/10.1007/978-3-540-88564-1_2.
-
(2008)
The Semantic Web-ISWC
, pp. 17-32
-
-
Tudorache, T.1
Noy, N.F.2
Tu, S.3
Musen, M.A.4
-
7
-
-
84873185663
-
Commentary: State of the art and open challenges in community-driven knowledge curation
-
Groza T, Tudorache T, Dumontier M. Commentary: State of the art and open challenges in community-driven knowledge curation. J Biomed Inform. 2013; 46:1-4.
-
(2013)
J Biomed Inform
, vol.46
, pp. 1-4
-
-
Groza, T.1
Tudorache, T.2
Dumontier, M.3
-
8
-
-
33751431796
-
NCI Thesaurus: a semantic model integrating cancer-related clinical and molecular information
-
Sioutos N, Coronado Sd, Haber MW, Hartel FW, Shaiu WL, Wright LW. NCI Thesaurus: a semantic model integrating cancer-related clinical and molecular information. J Biomed Inform. 2007; 40:30-43.
-
(2007)
J Biomed Inform
, vol.40
, pp. 30-43
-
-
Sioutos, N.1
Coronado, S.2
Haber, M.W.3
Hartel, F.W.4
Shaiu, W.L.5
Wright, L.W.6
-
9
-
-
84870448958
-
Impact of ontology evolution on functional analyses
-
Gross A, Hartung M, Prüfer K, Kelso J, Rahm E. Impact of ontology evolution on functional analyses. Bioinformatics. 2012; 28(20):2671-77.
-
(2012)
Bioinformatics
, vol.28
, Issue.20
, pp. 2671-2677
-
-
Gross, A.1
Hartung, M.2
Prüfer, K.3
Kelso, J.4
Rahm, E.5
-
10
-
-
58349111875
-
AmiGO: online access to ontology and annotation data
-
Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S, et al. AmiGO: online access to ontology and annotation data. Bioinformatics. 2009; 25(2):288-9.
-
(2009)
Bioinformatics
, vol.25
, Issue.2
, pp. 288-289
-
-
Carbon, S.1
Ireland, A.2
Mungall, C.J.3
Shu, S.4
Marshall, B.5
Lewis, S.6
-
11
-
-
70449356774
-
QuickGO: a web-based tool for Gene Ontology searching
-
Binns D, Dimmer E, Huntley R, Barrell D, O'Donovan C, Apweiler R. QuickGO: a web-based tool for Gene Ontology searching. Bioinformatics. 2009; 25(22):3045-46.
-
(2009)
Bioinformatics
, vol.25
, Issue.22
, pp. 3045-3046
-
-
Binns, D.1
Dimmer, E.2
Huntley, R.3
Barrell, D.4
O'Donovan, C.5
Apweiler, R.6
-
12
-
-
67849128700
-
BioPortal: ontologies and integrated data resources at the click of a mouse
-
Noy NF, Shah NH, Whetzel PL, Dai B, Dorf M, Griffith N, et al. BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Res. 2009; 37(suppl 2):W170-3.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. W170-W173
-
-
Noy, N.F.1
Shah, N.H.2
Whetzel, P.L.3
Dai, B.4
Dorf, M.5
Griffith, N.6
-
13
-
-
35948989284
-
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
-
Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, et al. The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat Biotechnol. 2007; 25(11):1251-5.
-
(2007)
Nat Biotechnol
, vol.25
, Issue.11
, pp. 1251-1255
-
-
Smith, B.1
Ashburner, M.2
Rosse, C.3
Bard, J.4
Bug, W.5
Ceusters, W.6
-
14
-
-
15944411333
-
GOChase: correcting errors from Gene Ontology-based annotations for gene products
-
Park YR, Park CH, Kim JH. GOChase: correcting errors from Gene Ontology-based annotations for gene products. Bioinformatics. 2005; 21(6):829-31.
-
(2005)
Bioinformatics
, vol.21
, Issue.6
, pp. 829-831
-
-
Park, Y.R.1
Park, C.H.2
Kim, J.H.3
-
15
-
-
44649088357
-
Monitoring the evolutionary aspect of the Gene Ontology to enhance predictability and usability
-
Park JC, Kim Te, Park J. Monitoring the evolutionary aspect of the Gene Ontology to enhance predictability and usability. BMC Bioinformatics. 2008; 9(Suppl 3):S7.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. S7
-
-
Park, J.C.1
Kim, T.2
Park, J.3
-
17
-
-
84859041844
-
CODEX: exploration of semantic changes between ontology versions
-
Hartung M, Gross A, Rahm E. CODEX: exploration of semantic changes between ontology versions. Bioinformatics. 2012; 28(6):895-6.
-
(2012)
Bioinformatics
, vol.28
, Issue.6
, pp. 895-896
-
-
Hartung, M.1
Gross, A.2
Rahm, E.3
-
20
-
-
84873208823
-
COnto-Diff: generation of complex evolution mappings for life science ontologies
-
Hartung M, Gross A, Rahm E. COnto-Diff: generation of complex evolution mappings for life science ontologies. J Biomed Inform. 2013; 46:15-32.
-
(2013)
J Biomed Inform
, vol.46
, pp. 15-32
-
-
Hartung, M.1
Gross, A.2
Rahm, E.3
-
21
-
-
0036927347
-
PROMPTDIFF: a fixed-point algorithm for comparing ontology versions
-
AAAI/IAAI. American Association for Artificial Intelligence
-
Noy NF, Musen MA. PROMPTDIFF: a fixed-point algorithm for comparing ontology versions. In: AAAI/IAAI. American Association for Artificial Intelligence: 2002. p. 744-50. http://dl.acm.org/citation.cfm?id=777092.777207.
-
(2002)
, pp. 744-750
-
-
Noy, N.F.1
Musen, M.A.2
-
22
-
-
84938771426
-
-
Google Web Toolkit. http://developers.google.com/web-toolkit/.
-
-
-
-
23
-
-
84938814302
-
-
InfoVis Toolkit. http://philogb.github.io/jit/.
-
-
-
-
24
-
-
68249087607
-
Semantic similarity in biomedical ontologies
-
Pesquita C, Faria D, Falcao AO, Lord P, Couto FM. Semantic similarity in biomedical ontologies. PLoS Comput Biol. 2009; 5(7):e1000443.
-
(2009)
PLoS Comput Biol
, vol.5
, Issue.7
, pp. e1000443
-
-
Pesquita, C.1
Faria, D.2
Falcao, A.O.3
Lord, P.4
Couto, F.M.5
-
25
-
-
84946023145
-
The GOA database: gene ontology annotation updates for 2015
-
Huntley RP, Sawford T, Mutowo-Meullenet P, Shypitsyna A, Bonilla C, Martin MJ, et al. The GOA database: gene ontology annotation updates for 2015. Nucleic Acids Res. 2015; 43(D1):D1057-D63.
-
(2015)
Nucleic Acids Res
, vol.43
, Issue.D1
, pp. D1057-D1063
-
-
Huntley, R.P.1
Sawford, T.2
Mutowo-Meullenet, P.3
Shypitsyna, A.4
Bonilla, C.5
Martin, M.J.6
-
26
-
-
0035267939
-
Creating semantic web contents with protege-2000
-
Noy NF, Sintek M, Decker S, Crubézy M, Fergerson RW, Musen MA. Creating semantic web contents with protege-2000. IEEE Intell Syst. 2001; 16(2):60-71.
-
(2001)
IEEE Intell Syst
, vol.16
, Issue.2
, pp. 60-71
-
-
Noy, N.F.1
Sintek, M.2
Decker, S.3
Crubézy, M.4
Fergerson, R.W.5
Musen, M.A.6
-
27
-
-
34548595489
-
Gene Ontology OBO-Edit Working Group, Lewis S. OBO-Edit - an ontology editor for biologists
-
Day-Richter J, Harris MA, Haendel M. Gene Ontology OBO-Edit Working Group, Lewis S. OBO-Edit - an ontology editor for biologists. Bioinformatics. 2007; 23(16):2198-200.
-
(2007)
Bioinformatics
, vol.23
, Issue.16
, pp. 2198-2200
-
-
Day-Richter, J.1
Harris, M.A.2
Haendel, M.3
-
28
-
-
33750444971
-
Auditing as part of the terminology design life cycle
-
Min H, Perl Y, Chen Y, Halper M, Geller J, Wang Y. Auditing as part of the terminology design life cycle. J Am Med Inform Assoc. 2006; 13(6):676-90.
-
(2006)
J Am Med Inform Assoc
, vol.13
, Issue.6
, pp. 676-690
-
-
Min, H.1
Perl, Y.2
Chen, Y.3
Halper, M.4
Geller, J.5
Wang, Y.6
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