REX-A tool for discovering evolution trends in ontology regions

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 8574 LNBI, Issue , 2014, Pages 96-103

  Christen, Victor ^a   Groß, Anika ^a   Hartung, Michael ^a  

^a UNIVERSITY OF LEIPZIG   (Germany)

Author keywords

graph vizualisation; ontologies; ontology evolution

Indexed keywords

ARTIFICIAL INTELLIGENCE; COMPUTER SCIENCE; COMPUTERS; ONTOLOGY;

APPLICATION SCENARIO; EVOLUTION TREND; GENE ANNOTATION; ONTOLOGY EVOLUTION; STABLE REGION; USER FRIENDLY INTERFACE; VIZUALISATION; WEB-BASED SYSTEM;

DATA INTEGRATION;

EID: 84958528353     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-319-08590-6_9     Document Type: Conference Paper

References (16)

1. Bodenreider, O., Stevens, R.: Bio-ontologies: current trends and future directions. Briefings in Bioinformatics 7(3) (2006)
2. Groß, A., Hartung, M., Prüfer, K., et al.: Impact of ontology evolution on functional analyses. Bioinformatics 28(20) (2012)
3. Groza, T., Tudorache, T., Dumontier, M.: Commentary: State of the art and open challenges in community-driven knowledge curation. Journal of Biomedical Informatics 46(1) (2013)
4. Hartung, M., Gross, A., Kirsten, T., Rahm, E.: Discovering Evolving Regions in Life Science Ontologies. In: Lambrix, P., Kemp, G. (eds.) DILS 2010. LNCS, vol. 6254, pp. 19-34. Springer, Heidelberg (2010)
5. Hartung, M., Gross, A., Rahm, E.: CODEX: exploration of semantic changes between ontology versions. Bioinformatics 28(6) (2012)
6. Hartung, M., Kirsten, T., Gross, A., Rahm, E.: OnEX: Exploring changes in life science ontologies. BMC Bioinformatics 10(1) (2009)
7. Hartung, M., Terwilliger, J.F., Rahm, E.: Recent Advances in Schema and Ontology Evolution. In: Schema Matching and Mapping. Springer, Heidelberg (2011)
8. Lambrix, P., Tan, H., Jakoniene, V., Str̈omb̈ack, L.: Biological ontologies. In: Semantic Web. Springer, Heidelberg (2007)
9. Malone, J., Stevens, R.: Measuring the level of activity in community built bio-ontologies. Journal of Biomedical Informatics 46(1) (2013)
10. Noy, N.F., Shah, N.H., Whetzel, P., et al.: BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Research 37(suppl. 2) (2009)
11. Park, J.C., Kim, T., Park, J.: Monitoring the evolutionary aspect of the gene ontology to enhance predictability and usability. BMC Bioinformatics 9 (2008)
12. Park, Y.R., Park, C.H., Kim, J.H.: GOChase: correcting errors from Gene Ontology-based annotations for gene products. Bioinformatics 21(6) (2005)
13. Sioutos, N., De Coronado, S., Haber, M.W., et al.: NCI Thesaurus: a semantic model integrating cancer-related clinical and molecular information. Journal of Biomedical Informatics 40(1) (2007)
14. Smith, B., Ashburner, M., Rosse, C., et al.: The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nature Biotechnology 25(11) (2007)
15. Subramanian, A., Tamayo, P., Mootha, V.K., et al.: Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. PNAS 102(43) (2005)
16. Tudorache, T., Noy, N.F., Tu, S., Musen, M.A.: Supporting collaborative ontology development in prot́eǵe. In: Sheth, A.P., Staab, S., Dean, M., Paolucci, M., Maynard, D., Finin, T., Thirunarayan, K. (eds.) ISWC 2008. LNCS, vol. 5318, pp. 17-32. Springer, Heidelberg (2008)