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Volumn 28, Issue 20, 2012, Pages 2671-2677

Impact of ontology evolution on functional analyses

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; ARTICLE; GENE; GENETICS; LINGUISTICS; MOLECULAR GENETICS; PRIMATE; RODENT;

EID: 84870448958     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts498     Document Type: Article
Times cited : (31)

References (24)
  • 2
    • 58149187893 scopus 로고    scopus 로고
    • The GOA database in 2009-an integrated gene ontology annotation resource
    • Barrell, D. et al. (2009) The GOA database in 2009-an integrated gene ontology annotation resource. Nucleic Acids Res., 37 (Suppl. 1), D396-D403.
    • (2009) Nucleic Acids Res. , vol.37 , Issue.SUPPL. 1
    • Barrell, D.1
  • 3
    • 33748792021 scopus 로고    scopus 로고
    • Bio-ontologies: Current trends and future directions
    • Bodenreider, O. and Stevens, R. (2006) Bio-ontologies: current trends and future directions. Brief. Bioinformatics, 7, 256-274.
    • (2006) Brief. Bioinformatics , vol.7 , pp. 256-274
    • Bodenreider, O.1    Stevens, R.2
  • 4
    • 84860501618 scopus 로고    scopus 로고
    • A procedure for assessing go annotation consistency
    • Dolan, M. et al. (2005) A procedure for assessing go annotation consistency. Bioinformatics, 21 (Suppl. 1), Ü36-Ü43.
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 1 , pp. 36-43
    • Dolan, M.1
  • 5
    • 84984996500 scopus 로고    scopus 로고
    • The gene ontology project in 2008
    • Gene Ontology Consortium
    • Gene Ontology Consortium(2008) The gene ontology project in 2008. Nucleic Acids Res., 36 (Database Issue), D440-D444.
    • (2008) Nucleic Acids Res. , vol.36 , Issue.DATABASE ISSUE
  • 6
    • 70350359462 scopus 로고    scopus 로고
    • Estimating the quality of ontology-based annotations by considering evolutionary changes
    • Springer, Heidelberg
    • Gross, A. et al. (2009) Estimating the quality of ontology-based annotations by considering evolutionary changes. In Proceedings of the 6th Int. Workshop on Data Integration in the Life Sciences. Springer, Heidelberg, pp. 71-87.
    • (2009) Proceedings of the 6th Int. Workshop on Data Integration in the Life Sciences , pp. 71-87
    • Gross, A.1
  • 9
    • 84859041844 scopus 로고    scopus 로고
    • CODEX: Exploration of semantic changes between ontology versions
    • Hartung, M. et al. (2012a) CODEX: exploration of semantic changes between ontology versions. Bioinformatics, 28, 895-896.
    • (2012) Bioinformatics , vol.28 , pp. 895-896
    • Hartung, M.1
  • 10
    • 84873186476 scopus 로고    scopus 로고
    • Conto-diff: Generation of complex evolution mappings for life science ontologies
    • in press)
    • Hartung, M. et al. (2012b) Conto-diff: generation of complex evolution mappings for life science ontologies. J. Biomed. Informat, (in press).
    • (2012) J. Biomed. Informat
    • Hartung, M.1
  • 11
    • 50849122974 scopus 로고    scopus 로고
    • Patterns of positive selection in six mammalian genomes
    • Kosiol, C. et al. (2008) Patterns of positive selection in six mammalian genomes. PLoS Genet., 4, el000144.
    • (2008) PLoS Genet. , vol.4
    • Kosiol, C.1
  • 12
    • 84919968378 scopus 로고    scopus 로고
    • Biological ontologies
    • Lambrix, P. et al. (2007) Biological ontologies. Semantic Web, 85-99.
    • (2007) Semantic Web , pp. 85-99
    • Lambrix, P.1
  • 13
    • 79961118782 scopus 로고    scopus 로고
    • How the gene ontology evolves
    • Leonelli, S. et al. (2011) How the gene ontology evolves. BMC Bioinformatics, 12, 1-7.
    • (2011) BMC Bioinformatics , vol.12 , pp. 1-7
    • Leonelli, S.1
  • 14
    • 0005180705 scopus 로고    scopus 로고
    • An information-theoretic definition of similarity
    • Morgan Kaufmann Publishers Inc, San Francisco, CA, USA
    • Lin, D (1998) An information-theoretic definition of similarity. In: Proceedings of the 15th international conference on Machine Learning, ICML '98. Morgan Kaufmann Publishers Inc, San Francisco, CA, USA, pp. 296-304.
    • (1998) Proceedings of the 15th International Conference on Machine Learning, ICML '98 , pp. 296-304
    • Lin, D.1
  • 16
    • 0036927347 scopus 로고    scopus 로고
    • Promptdiff: A fixed-point algorithm for comparing ontology versions
    • Menlo Park, CA; Cambridge, MA; London; AAAI Press; MIT Press
    • Noy, N. and Musen, M (2002) Promptdiff: a fixed-point algorithm for comparing ontology versions. In: Proceedings of the National Conference on Artificial Intelligence. Menlo Park, CA; Cambridge, MA; London; AAAI Press; MIT Press, pp. 744-750.
    • (2002) Proceedings of the National Conference on Artificial Intelligence , pp. 744-750
    • Noy, N.1    Musen, M.2
  • 17
    • 67650898284 scopus 로고    scopus 로고
    • Incorporating functional inter-relationships into protein function prediction algorithms
    • Pandey, G et al. (2009) Incorporating functional inter-relationships into protein function prediction algorithms. BMC Bioinformatics, 10, 1-22.
    • (2009) BMC Bioinformatics , vol.10 , pp. 1-22
    • Pandey, G.1
  • 18
    • 44649088357 scopus 로고    scopus 로고
    • Monitoring the evolutionary aspect of the gene ontology to enhance predictability and usability
    • Park, J. et al. (2008) Monitoring the evolutionary aspect of the gene ontology to enhance predictability and usability. BMC Bioinformatics, 9 (Suppl. 3), S7.
    • (2008) BMC Bioinformatics , vol.9 , Issue.SUPPL. 3
    • Park, J.1
  • 19
    • 84891942071 scopus 로고    scopus 로고
    • Where GO is going and what it means for ontology extension
    • Buffalo, NY, USA CEURWorkshop Proceedings ISSN 1613
    • Pesquita, C. and Couto, F.M. (2011) Where GO is going and what it means for ontology extension. In Proceedings of the 2nd International Conference on Biomedical Ontology, vol. 833. Buffalo, NY, USA, pp. 3-9. CEURWorkshop Proceedings, ISSN 1613-0073.
    • (2011) Proceedings of the 2nd International Conference on Biomedical Ontology , vol.833 , pp. 3-9
    • Pesquita, C.1    Couto, F.M.2
  • 20
    • 68249087607 scopus 로고    scopus 로고
    • Semantic similarity in biomedical ontologies
    • Pesquita, C. et al. (2009) Semantic similarity in biomedical ontologies. PLoS Comput. Biol., 5, el000443.
    • (2009) PLoS Comput. Biol. , vol.5
    • Pesquita, C.1
  • 21
    • 33847173733 scopus 로고    scopus 로고
    • FUNC: A package for detecting significant associations between gene sets and ontological annotations
    • Pmfer, K. et al. (2007) FUNC: a package for detecting significant associations between gene sets and ontological annotations. BMC Bioinformatics, 8, 1-10.
    • (2007) BMC Bioinformatics , vol.8 , pp. 1-10
    • Pmfer, K.1
  • 22
    • 33846796225 scopus 로고    scopus 로고
    • Ontology annotation: Mapping genomic regions to biological function
    • Thomas, P. et al. (2007) Ontology annotation: mapping genomic regions to biological function. Curr. Opin. Chem. Biol., 11, 4-11.
    • (2007) Curr. Opin. Chem. Biol. , vol.11 , pp. 4-11
    • Thomas, P.1
  • 23
    • 70349581593 scopus 로고    scopus 로고
    • Gene set enrichment analysis
    • Tilford, C. and Siemers, N. (2009) Gene set enrichment analysis. Methods Mol. Biol., 563, 99-121.
    • (2009) Methods Mol. Biol. , vol.563 , pp. 99-121
    • Tilford, C.1    Siemers, N.2
  • 24
    • 34447294237 scopus 로고    scopus 로고
    • A new method to measure the semantic similarity of go terms
    • Wang, J. et al. (2007) A new method to measure the semantic similarity of go terms. Bioinformatics, 23, 1274-1281.
    • (2007) Bioinformatics , vol.23 , pp. 1274-1281
    • Wang, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.