-
1
-
-
84901283551
-
Succession of cable bacteria and electric currents in marine sediment
-
Schauer R, Risgaard-Petersen N, Kjeldsen KU, Bjerg JJT, Jørgensen BB, Schramm A, Nielsen LP. 2014. Succession of cable bacteria and electric currents in marine sediment. ISME J 8:1314-1322. http://dx.doi.org/10.1038/ismej.2013.239.
-
(2014)
ISME J
, vol.8
, pp. 1314-1322
-
-
Schauer, R.1
Risgaard-Petersen, N.2
Kjeldsen, K.U.3
Bjerg, J.J.T.4
Jørgensen, B.B.5
Schramm, A.6
Nielsen, L.P.7
-
2
-
-
84868626806
-
Filamentous bacteria transport electrons over centimetre distances
-
Pfeffer C, Larsen S, Song J, Dong MD, Besenbacher F, Meyer RL, Kjeldsen KU, Schreiber L, Gorby YA, El-Naggar MY, Leung KM, Schramm A, Risgaard-Petersen N, Nielsen LP. 2012. Filamentous bacteria transport electrons over centimetre distances. Nature 491:218-221. http://dx.doi.org/10.1038/nature11586.
-
(2012)
Nature
, vol.491
, pp. 218-221
-
-
Pfeffer, C.1
Larsen, S.2
Song, J.3
Dong, M.D.4
Besenbacher, F.5
Meyer, R.L.6
Kjeldsen, K.U.7
Schreiber, L.8
Gorby, Y.A.9
El-Naggar, M.Y.10
Leung, K.M.11
Schramm, A.12
Risgaard-Petersen, N.13
Nielsen, L.P.14
-
3
-
-
77649175984
-
Electric currents couple spatially separated biogeochemical processes in marine sediment
-
Nielsen LP, Risgaard-Petersen N, Fossing H, Christensen PB, Sayama M. 2010. Electric currents couple spatially separated biogeochemical processes in marine sediment. Nature 463:1071-1074. http://dx.doi.org/10.1038/nature08790.
-
(2010)
Nature
, vol.463
, pp. 1071-1074
-
-
Nielsen, L.P.1
Risgaard-Petersen, N.2
Fossing, H.3
Christensen, P.B.4
Sayama, M.5
-
4
-
-
84921626075
-
Electric potential microelectrode for studies of electrobiogeophysics
-
Damgaard LR, Risgaard-Petersen N, Nielsen LP. 2014. Electric potential microelectrode for studies of electrobiogeophysics. J Geophys Res Biogeosci 119:1906-1917. http://dx.doi.org/10.1002/2014JG002665.
-
(2014)
J Geophys Res Biogeosci
, vol.119
, pp. 1906-1917
-
-
Damgaard, L.R.1
Risgaard-Petersen, N.2
Nielsen, L.P.3
-
6
-
-
84864057905
-
Sulfur, iron-, and calcium cycling associated with natural electric currents running through marine sediment
-
Risgaard-Petersen N, Revil A, Meister P, Nielsen LP. 2012. Sulfur, iron-, and calcium cycling associated with natural electric currents running through marine sediment. Geochim Cosmochim Acta 92:1-13. http://dx.doi.org/10.1016/j.gca.2012.05.036.
-
(2012)
Geochim Cosmochim Acta
, vol.92
, pp. 1-13
-
-
Risgaard-Petersen, N.1
Revil, A.2
Meister, P.3
Nielsen, L.P.4
-
7
-
-
85029748766
-
Understanding biogeobatteries: where geophysics meets microbiology
-
Revil A, Mendonca CA, Atekwana EA, Kulessa B, Hubbard SS, Bohlen KJ. 2010. Understanding biogeobatteries: where geophysics meets microbiology. J Geophys Res Biogeosci 115:G00G02. http://dx.doi.org/10.1029/2009JG001065.
-
(2010)
J Geophys Res Biogeosci
, vol.115
, pp. G00G02
-
-
Revil, A.1
Mendonca, C.A.2
Atekwana, E.A.3
Kulessa, B.4
Hubbard, S.S.5
Bohlen, K.J.6
-
8
-
-
0000162032
-
The electrochemical mechanism of sulfide self-potentials
-
Sato M, Mooney HM. 1960. The electrochemical mechanism of sulfide self-potentials. Geophysics 1:226-249.
-
(1960)
Geophysics
, vol.1
, pp. 226-249
-
-
Sato, M.1
Mooney, H.M.2
-
9
-
-
84906942850
-
Natural occurrence of microbial sulphur oxidation by long-range electron transport in the seafloor
-
Malkin SY, Rao AMF, Seitaj D, Vasquez-Cardenas D, Zetsche E-M, Hidalgo-Martinez S, Boschker HTS, Meysman FJR. 2014. Natural occurrence of microbial sulphur oxidation by long-range electron transport in the seafloor. ISME J 8:1843-1854. http://dx.doi.org/10.1038/ismej.2014.41.
-
(2014)
ISME J
, vol.8
, pp. 1843-1854
-
-
Malkin, S.Y.1
Rao, A.M.F.2
Seitaj, D.3
Vasquez-Cardenas, D.4
Zetsche, E.-M.5
Hidalgo-Martinez, S.6
Boschker, H.T.S.7
Meysman, F.J.R.8
-
10
-
-
84921688107
-
The geochemical fingerprint of microbial long-distance electron transport in the seafloor
-
Meysman FJR, Risgaard-Petersen N, Malkin SY, Nielsen LP. 2015. The geochemical fingerprint of microbial long-distance electron transport in the seafloor. Geochim Cosmochim Acta 152:122-142. http://dx.doi.org/10.1016/j.gca.2014.12.014.
-
(2015)
Geochim Cosmochim Acta
, vol.152
, pp. 122-142
-
-
Meysman, F.J.R.1
Risgaard-Petersen, N.2
Malkin, S.Y.3
Nielsen, L.P.4
-
11
-
-
84921417490
-
Rapid redox signal transmission by cable bacteria beneath a photosynthetic biofilm
-
Malkin SY, Meysman FJ. 2015. Rapid redox signal transmission by cable bacteria beneath a photosynthetic biofilm. Appl Environ Microbiol 81:948-956. http://dx.doi.org/10.1128/aem.02682-14.
-
(2015)
Appl Environ Microbiol
, vol.81
, pp. 948-956
-
-
Malkin, S.Y.1
Meysman, F.J.2
-
12
-
-
84905036269
-
Electric coupling between distant nitrate reduction and sulfide oxidation in marine sediment
-
Marzocchi U, Trojan D, Larsen S, Meyer RL, NP R, Schramm A, Nielsen LP, Risgaard-Petersen N. 2014. Electric coupling between distant nitrate reduction and sulfide oxidation in marine sediment. ISME J 8:1682-1690. http://dx.doi.org/10.1038/ismej.2014.19.
-
(2014)
ISME J
, vol.8
, pp. 1682-1690
-
-
Marzocchi, U.1
Trojan, D.2
Larsen, S.3
Meyer, R.L.4
NP, R.5
Schramm, A.6
Nielsen, L.P.7
Risgaard-Petersen, N.8
-
13
-
-
84924812246
-
Cable bacteria associated with long distance electron transport in New England salt marsh sediment
-
Larsen S, Nielsen LP, Schramm A. 2015. Cable bacteria associated with long distance electron transport in New England salt marsh sediment. Environ Microbiol Rep 7:175-179. http://dx.doi.org/10.1111/1758-2229.12216.
-
(2015)
Environ Microbiol Rep
, vol.7
, pp. 175-179
-
-
Larsen, S.1
Nielsen, L.P.2
Schramm, A.3
-
14
-
-
84868318457
-
Sulfatereducing microorganisms in wetlands: fameless actors in carbon cycling and climate change
-
Pester M, Knorr K-H, Friedrich MW, Wagner M, Loy A. 2012. Sulfatereducing microorganisms in wetlands: fameless actors in carbon cycling and climate change. Front Microbiol 3:1-19. http://dx.doi.org/10.3389/fmicb.2012.00072.
-
(2012)
Front Microbiol
, vol.3
, pp. 1-19
-
-
Pester, M.1
Knorr, K.-H.2
Friedrich, M.W.3
Wagner, M.4
Loy, A.5
-
15
-
-
84906257271
-
Mineral cycling and pH gradient related with biological activity under transient anoxic-oxic conditions: effect on P mobility in volcanic lake sediments
-
Ribeiro DC, Martins G, Nogueira R, Brito AG. 2014. Mineral cycling and pH gradient related with biological activity under transient anoxic-oxic conditions: effect on P mobility in volcanic lake sediments. Environ Sci Technol 48:9205-9210. http://dx.doi.org/10.1021/es501037g.
-
(2014)
Environ Sci Technol
, vol.48
, pp. 9205-9210
-
-
Ribeiro, D.C.1
Martins, G.2
Nogueira, R.3
Brito, A.G.4
-
16
-
-
1642348820
-
Relationship between self-potential (SP) signals and redox conditions in contaminated groundwater
-
Naudet V, Revil A, Bottero JY, Begassat P. 2003. Relationship between self-potential (SP) signals and redox conditions in contaminated groundwater. Geophys Res Lett 30:2091. http://dx.doi.org/10.1029/2003GL018096.
-
(2003)
Geophys Res Lett
, vol.30
, pp. 2091
-
-
Naudet, V.1
Revil, A.2
Bottero, J.Y.3
Begassat, P.4
-
17
-
-
0030416734
-
An amperometric microsensor for the determination of H2S in aquatic environments
-
Jeroschewski P, Steuckart C, Kuhl M. 1996. An amperometric microsensor for the determination of H2S in aquatic environments. Anal Chem 68:4351-4357. http://dx.doi.org/10.1021/ac960091b.
-
(1996)
Anal Chem
, vol.68
, pp. 4351-4357
-
-
Jeroschewski, P.1
Steuckart, C.2
Kuhl, M.3
-
18
-
-
84986767568
-
An oxygen microsensor with a guard cathode
-
Revsbech NP. 1989. An oxygen microsensor with a guard cathode. Limnol Oceanogr 34:474-478. http://dx.doi.org/10.4319/lo.1989.34.2.0474.
-
(1989)
Limnol Oceanogr
, vol.34
, pp. 474-478
-
-
Revsbech, N.P.1
-
19
-
-
0000224938
-
Microelectrodes: their use in microbial ecology
-
Revsbech NP, Jørgensen BB. 1986. Microelectrodes: their use in microbial ecology. Adv Microb Ecol 9:293-352. http://dx.doi.org/10.1007/978-1-4757-0611-6_7.
-
(1986)
Adv Microb Ecol
, vol.9
, pp. 293-352
-
-
Revsbech, N.P.1
Jørgensen, B.B.2
-
20
-
-
84944816274
-
Spectrophotometric determination of hydrogen sulfide in natural waters
-
Cline JD. 1969. Spectrophotometric determination of hydrogen sulfide in natural waters. Limnol Oceanogr 14:454. http://dx.doi.org/10.4319/lo.1969.14.3.0454.
-
(1969)
Limnol Oceanogr
, vol.14
, pp. 454
-
-
Cline, J.D.1
-
21
-
-
84986765100
-
Diffusion coefficients in nearshore marine sediments
-
Ullman WJ, Aller RC. 1982. Diffusion coefficients in nearshore marine sediments. Limnol Oceanogr 27:552-556. http://dx.doi.org/10.4319/lo.1982.27.3.0552.
-
(1982)
Limnol Oceanogr
, vol.27
, pp. 552-556
-
-
Ullman, W.J.1
Aller, R.C.2
-
22
-
-
0000038544
-
A method of estimating the total length of root in a sample
-
Newman EI. 1966. A method of estimating the total length of root in a sample. J Appl Ecol 3:139-145. http://dx.doi.org/10.2307/2401670.
-
(1966)
J Appl Ecol
, vol.3
, pp. 139-145
-
-
Newman, E.I.1
-
23
-
-
77953203254
-
Distribution, ecology, and molecular identification of Thioploca from Danish brackish water sediments
-
Høgslund S, Nielsen JL, Nielsen LP. 2010. Distribution, ecology, and molecular identification of Thioploca from Danish brackish water sediments. FEMS Microbiol Ecol 73:110-120. http://dx.doi.org/10.1111/j.1574-6941.2010.00878.x.
-
(2010)
FEMS Microbiol Ecol
, vol.73
, pp. 110-120
-
-
Høgslund, S.1
Nielsen, J.L.2
Nielsen, L.P.3
-
24
-
-
33751536386
-
Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes
-
Pernthaler J, Glockner FO, Schonhuber W, Amann R. 2001. Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes. Method Microbiol 30:207-226. http://dx.doi.org/10.1016/S0580-9517(01)30046-6.
-
(2001)
Method Microbiol
, vol.30
, pp. 207-226
-
-
Pernthaler, J.1
Glockner, F.O.2
Schonhuber, W.3
Amann, R.4
-
25
-
-
0027068041
-
Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: problems and solutions
-
Manz W, Amann R, Ludwig W, Wagner M, Schleifer KH. 1992. Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: problems and solutions. Syst Appl Microbiol 15:593-600. http://dx.doi.org/10.1016/S0723-2020(11)80121-9.
-
(1992)
Syst Appl Microbiol
, vol.15
, pp. 593-600
-
-
Manz, W.1
Amann, R.2
Ludwig, W.3
Wagner, M.4
Schleifer, K.H.5
-
26
-
-
0344172842
-
The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set
-
Daims H, Brühl A, Amann R, Schleifer K-H, Wagner M. 1999. The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22:434-444. http://dx.doi.org/10.1016/S0723-2020(99)80053-8.
-
(1999)
Syst Appl Microbiol
, vol.22
, pp. 434-444
-
-
Daims, H.1
Brühl, A.2
Amann, R.3
Schleifer, K.-H.4
Wagner, M.5
-
27
-
-
79952422304
-
Quality control and preprocessing of metagenomic datasets
-
Schmieder R, Edwards R. 2011. Quality control and preprocessing of metagenomic datasets. Bioinformatics 27:863-864. http://dx.doi.org/10.1093/bioinformatics/btr026.
-
(2011)
Bioinformatics
, vol.27
, pp. 863-864
-
-
Schmieder, R.1
Edwards, R.2
-
28
-
-
84860771820
-
SPAdes: a new genome assembly algorithm and its applications to singlecell sequencing
-
Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA. 2012. SPAdes: a new genome assembly algorithm and its applications to singlecell sequencing. J Comput Biol 19:455-477. http://dx.doi.org/10.1089/cmb.2012.0021.
-
(2012)
J Comput Biol
, vol.19
, pp. 455-477
-
-
Bankevich, A.1
Nurk, S.2
Antipov, D.3
Gurevich, A.A.4
Dvorkin, M.5
Kulikov, A.S.6
Lesin, V.M.7
Nikolenko, S.I.8
Pham, S.9
Prjibelski, A.D.10
Pyshkin, A.V.11
Sirotkin, A.V.12
Vyahhi, N.13
Tesler, G.14
Alekseyev, M.A.15
Pevzner, P.A.16
-
29
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402. http://dx.doi.org/10.1093/nar/25.17.3389.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
30
-
-
84864134721
-
SINA: accurate high-throughput multiple sequence alignment of rRNA genes
-
Pruesse E, Peplies J, Glöckner FO. 2012. SINA: accurate high-throughput multiple sequence alignment of rRNA genes. Bioinformatics 28:1823-1829. http://dx.doi.org/10.1093/bioinformatics/bts252.
-
(2012)
Bioinformatics
, vol.28
, pp. 1823-1829
-
-
Pruesse, E.1
Peplies, J.2
Glöckner, F.O.3
-
31
-
-
2542523843
-
ARB: a software environment for sequence data
-
Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar, Buchner A, Lai T, Steppi S, Jobb G, Förster W, Brettske I, Gerber S, Ginhart AW, Gross O, Grumann S, Hermann S, Jost R, König A, Liss T, Lüßmann R, May M, Nonhoff B, Reichel B, Strehlow R, Stamatakis A, Stuckmann N, Vilbig A, Lenke M, Ludwig T, Bode A, Schleifer KH. 2004. ARB: a software environment for sequence data. Nucleic Acids Res 32:1363-1371. http://dx.doi.org/10.1093/nar/gkh293.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Yadhukumar6
Buchner, A.7
Lai, T.8
Steppi, S.9
Jobb, G.10
Förster, W.11
Brettske, I.12
Gerber, S.13
Ginhart, A.W.14
Gross, O.15
Grumann, S.16
Hermann, S.17
Jost, R.18
König, A.19
Liss, T.20
Lüßmann, R.21
May, M.22
Nonhoff, B.23
Reichel, B.24
Strehlow, R.25
Stamatakis, A.26
Stuckmann, N.27
Vilbig, A.28
Lenke, M.29
Ludwig, T.30
Bode, A.31
Schleifer, K.H.32
more..
-
32
-
-
13444304389
-
GenBank
-
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL. 2005. GenBank. Nucleic Acids Res 33:D34-D38.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. D34-D38
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
33
-
-
84873739311
-
The SILVA rRNA gene database project: improved data processing and web-based tools
-
Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glöckner FO. 2013. The SILVA rRNA gene database project: improved data processing and web-based tools. Nucleic Acids Res 41:D590-D596. http://dx.doi.org/10.1093/nar/gks1219.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D590-D596
-
-
Quast, C.1
Pruesse, E.2
Yilmaz, P.3
Gerken, J.4
Schweer, T.5
Yarza, P.6
Peplies, J.7
Glöckner, F.O.8
-
34
-
-
84906272014
-
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
-
Yarza P, Yilmaz P, Pruesse E, Glockner FO, Ludwig W, Schleifer K-H, Whitman WB, Euzeby J, Amann R, Rossello-Mora R. 2014. Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences. Nat Rev Microbiol 12:635-645. http://dx.doi.org/10.1038/nrmicro3330.
-
(2014)
Nat Rev Microbiol
, vol.12
, pp. 635-645
-
-
Yarza, P.1
Yilmaz, P.2
Pruesse, E.3
Glockner, F.O.4
Ludwig, W.5
Schleifer, K.-H.6
Whitman, W.B.7
Euzeby, J.8
Amann, R.9
Rossello-Mora, R.10
-
35
-
-
0003891761
-
Modern electrochemistry 1: ionics
-
2nd ed, vol 1. Plenum Press, Inc, New York, NY
-
Bockris JO, Reddy AK. 1998. Modern electrochemistry 1: ionics, 2nd ed, vol 1. Plenum Press, Inc, New York, NY.
-
(1998)
-
-
Bockris, J.O.1
Reddy, A.K.2
-
36
-
-
0000072622
-
Electrochemistry of the double layer
-
In Kruyt HR (ed), Elsevier, New York, NY
-
Overbeek JTG. 1952. Electrochemistry of the double layer, p 115-193. In Kruyt HR (ed), Colloid science: irreversible system. Elsevier, New York, NY.
-
(1952)
Colloid science: irreversible system
, pp. 115-193
-
-
Overbeek, J.T.G.1
-
37
-
-
0035030255
-
Sulphate reduction and sulphur cycling in lake sediments: a review
-
Holmer M, Storkholm P. 2001. Sulphate reduction and sulphur cycling in lake sediments: a review. Freshw Biol 46:431-451. http://dx.doi.org/10.1046/j.1365-2427.2001.00687.x.
-
(2001)
Freshw Biol
, vol.46
, pp. 431-451
-
-
Holmer, M.1
Storkholm, P.2
-
38
-
-
0017343370
-
Energy conservation in chemotropic anaerobic bacteria
-
Thauer RK, Jungermann K, Decker K. 1977. Energy conservation in chemotropic anaerobic bacteria. Bacteriol Rev 41:100-180.
-
(1977)
Bacteriol Rev
, vol.41
, pp. 100-180
-
-
Thauer, R.K.1
Jungermann, K.2
Decker, K.3
|