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Volumn 73, Issue 1, 2010, Pages 110-120

Distribution, ecology and molecular identification of Thioploca from Danish brackish water sediments

Author keywords

Biomass distribution; Ecological niche; Nitrate accumulation; Phylogeny; Thioploca ingrica

Indexed keywords

BACTERIAL DNA; FRESH WATER; NITRATE; PHOSPHATE; RNA 16S;

EID: 77953203254     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2010.00878.x     Document Type: Article
Times cited : (20)

References (50)
  • 1
    • 33747508514 scopus 로고    scopus 로고
    • Cultivated Beggiatoa spp. define the phylogenetic root of morphologically diverse, uncultured, vacuolated sulfur bacteria
    • Ahmad A, Kalanetra KM Nelson DC (2006) Cultivated Beggiatoa spp. define the phylogenetic root of morphologically diverse, uncultured, vacuolated sulfur bacteria. Can J Microbiol 52 : 591 598.
    • (2006) Can J Microbiol , vol.52 , pp. 591-598
    • Ahmad, A.1    Kalanetra, K.M.2    Nelson, D.C.3
  • 3
    • 0036967819 scopus 로고    scopus 로고
    • Dense mat-forming bacterium Thioploca ingrica (Beggiatoaceae) in eastern Lake Ontario: Implications to the benthic food web
    • Dermott R Legner M (2002) Dense mat-forming bacterium Thioploca ingrica (Beggiatoaceae) in eastern Lake Ontario: implications to the benthic food web. J Great Lakes Res 28 : 688 697.
    • (2002) J Great Lakes Res , vol.28 , pp. 688-697
    • Dermott, R.1    Legner, M.2
  • 4
    • 0027036878 scopus 로고
    • What can ecologists learn from microbes: Life beneath a square centimetre of sediment surface
    • Fenchel T (1992) What can ecologists learn from microbes: life beneath a square centimetre of sediment surface. Funct Ecol 6 : 499 507.
    • (1992) Funct Ecol , vol.6 , pp. 499-507
    • Fenchel, T.1
  • 5
    • 0028977490 scopus 로고
    • Concentration and transport of nitrate by the mat-forming sulfur bacterium Thioploca
    • Fossing H, Gallardo VA, Jørgensen BB et al 1995) Concentration and transport of nitrate by the mat-forming sulfur bacterium Thioploca. Nature 374 : 713 715.
    • (1995) Nature , vol.374 , pp. 713-715
    • Fossing, H.1    Gallardo, V.A.2    Jørgensen, B.B.3
  • 6
    • 0017398622 scopus 로고
    • Large benthic microbial communities in sulphide biota under Peru-Chile subsurface countercurrent
    • Gallardo VA (1977) Large benthic microbial communities in sulphide biota under Peru-Chile subsurface countercurrent. Nature 268 : 331 333.
    • (1977) Nature , vol.268 , pp. 331-333
    • Gallardo, V.A.1
  • 7
    • 0033133367 scopus 로고    scopus 로고
    • New insights on old bacteria: Diversity and function of morphologically conspicuous sulfur bacteria in aquatic systems
    • Gray ND Head IM (1999) New insights on old bacteria: diversity and function of morphologically conspicuous sulfur bacteria in aquatic systems. Hydrobiologia 401 : 97 112.
    • (1999) Hydrobiologia , vol.401 , pp. 97-112
    • Gray, N.D.1    Head, I.M.2
  • 8
    • 77953183104 scopus 로고    scopus 로고
    • Minerals, mats, pearls and veils: Themes and variations in giant sulfur bacteria
    • Gadd, G.M. Semple, K.T. Lappin-Scott, H.M. eds), Cambridge University Press
    • Gray ND Head IM (2005) Minerals, mats, pearls and veils: themes and variations in giant sulfur bacteria. SGM Symposium 65: Micro-Organisms and Earth Systems - Advances in Geomicrobiology (Gadd GM, Semple KT Lappin-Scott HM, eds), pp. 35 70. Cambridge University Press
    • (2005) SGM Symposium 65: Micro-Organisms and Earth Systems - Advances in Geomicrobiology , pp. 35-70
    • Gray, N.D.1    Head, I.M.2
  • 9
    • 3042701611 scopus 로고    scopus 로고
    • Adaptation of sympatric Achromatium spp. to different redox conditions as a mechanism for coexistence of functionally similar sulphur bacteria
    • Gray ND, Comaskey D, Miskin IP, Pickup RW, Suzuki K Head IM (2004) Adaptation of sympatric Achromatium spp. to different redox conditions as a mechanism for coexistence of functionally similar sulphur bacteria. Environ Microbiol 6 : 669 677.
    • (2004) Environ Microbiol , vol.6 , pp. 669-677
    • Gray, N.D.1    Comaskey, D.2    Miskin, I.P.3    Pickup, R.W.4    Suzuki, K.5    Head, I.M.6
  • 10
    • 35948933458 scopus 로고    scopus 로고
    • The biogeographical distribution of closely related freshwater sediment bacteria is determined by environmental selection
    • Gray ND, Brown A, Nelson DR, Pickup RW, Rowan AK Head IM (2007) The biogeographical distribution of closely related freshwater sediment bacteria is determined by environmental selection. ISME J 1 : 596 605.
    • (2007) ISME J , vol.1 , pp. 596-605
    • Gray, N.D.1    Brown, A.2    Nelson, D.R.3    Pickup, R.W.4    Rowan, A.K.5    Head, I.M.6
  • 11
    • 0026762659 scopus 로고
    • Dual staining of natural bacterioplankton with 4′,6-diamidino-2- phenylindole and fluorescent oligonucleotide probes targeting kingdom-level 16S ribosomal-RNA sequences
    • Hicks RE, Amann RI Stahl DA (1992) Dual staining of natural bacterioplankton with 4′,6-diamidino-2-phenylindole and fluorescent oligonucleotide probes targeting kingdom-level 16S ribosomal-RNA sequences. Appl Environ Microb 58 : 2158 2163.
    • (1992) Appl Environ Microb , vol.58 , pp. 2158-2163
    • Hicks, R.E.1    Amann, R.I.2    Stahl, D.A.3
  • 12
    • 43049161150 scopus 로고    scopus 로고
    • Denitrification, nitrate turnover and aerobe respiration by benthic foraminifera in the oxygen minimum zone off Chile
    • Høgslund S, Revsbech NP, Cedhagen T, Nielsen LP Gallardo VA (2008) Denitrification, nitrate turnover and aerobe respiration by benthic foraminifera in the oxygen minimum zone off Chile. J Exp Mar Boil Ecol 359 : 85 91.
    • (2008) J Exp Mar Boil Ecol , vol.359 , pp. 85-91
    • Høgslund, S.1    Revsbech, N.P.2    Cedhagen, T.3    Nielsen, L.P.4    Gallardo, V.A.5
  • 14
    • 0034849408 scopus 로고    scopus 로고
    • MrBayes: Bayesian inference of phylogenetic trees
    • Huelsenbeck JP Ronquist F (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17 : 754 755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 15
    • 33745018165 scopus 로고    scopus 로고
    • Co-existence and survival of diatoms on sand grains
    • Jewson DH, Lowry SF Richard B (2006) Co-existence and survival of diatoms on sand grains. Eur J Phycol 41 : 131 146.
    • (2006) Eur J Phycol , vol.41 , pp. 131-146
    • Jewson, D.H.1    Lowry, S.F.2    Richard, B.3
  • 16
    • 0002916240 scopus 로고
    • Distribution of colorless sulfur bacteria (Beggiatoa Spp.) in a coastal marine sediment
    • Jørgensen BB (1977) Distribution of colorless sulfur bacteria (Beggiatoa Spp.) in a coastal marine sediment. Mar Biol 41 : 19 28.
    • (1977) Mar Biol , vol.41 , pp. 19-28
    • Jørgensen, B.B.1
  • 17
    • 0033067617 scopus 로고    scopus 로고
    • Thioploca spp.: Filamentous sulfur bacteria with nitrate vacuoles
    • Jørgensen BB Gallardo VA (1999) Thioploca spp.: filamentous sulfur bacteria with nitrate vacuoles. FEMS Microbiol Ecol 28 : 301 313.
    • (1999) FEMS Microbiol Ecol , vol.28 , pp. 301-313
    • Jørgensen, B.B.1    Gallardo, V.A.2
  • 18
    • 84870927039 scopus 로고    scopus 로고
    • Sulfide oxidation in marine sediments: Geochemistry meets microbiology
    • Amend, J.P. Edwards, K. Lyons, T.W. eds), Cambridge University Press
    • Jørgensen BB Nelson DC (2004) Sulfide oxidation in marine sediments: geochemistry meets microbiology. Sulfur Biogeochemistry - Past and Present (Amend JP, Edwards K Lyons TW, eds), pp. 63 81. Cambridge University Press
    • (2004) Sulfur Biogeochemistry - Past and Present , pp. 63-81
    • Jørgensen, B.B.1    Nelson, D.C.2
  • 19
    • 10444233619 scopus 로고    scopus 로고
    • Novel, attached, sulfur-oxidizing bacteria at shallow hydrothermal vent possess vacuoles not involved in respiratory nitrate accumulation
    • Kalanetra KM, Huston SL Nelson DC (2004) Novel, attached, sulfur-oxidizing bacteria at shallow hydrothermal vent possess vacuoles not involved in respiratory nitrate accumulation. Appl Environ Microb 70 : 7487 7496.
    • (2004) Appl Environ Microb , vol.70 , pp. 7487-7496
    • Kalanetra, K.M.1    Huston, S.L.2    Nelson, D.C.3
  • 20
    • 0346666701 scopus 로고    scopus 로고
    • Morphological and phylogenetic characterizations of freshwater Thioploca species from Lake Biwa, Japan, and Lake Constance, Germany
    • Kojima H, Teske A Fukui M (2003) Morphological and phylogenetic characterizations of freshwater Thioploca species from Lake Biwa, Japan, and Lake Constance, Germany. Appl Environ Microb 69 : 390 398.
    • (2003) Appl Environ Microb , vol.69 , pp. 390-398
    • Kojima, H.1    Teske, A.2    Fukui, M.3
  • 21
    • 33845638357 scopus 로고    scopus 로고
    • Carbon source utilization and accumulation of respiration-related substances by freshwater Thioploca species
    • Kojima H, Nakajima T Fukui M (2007) Carbon source utilization and accumulation of respiration-related substances by freshwater Thioploca species. FEMS Microbiol Ecol 59 : 23 31.
    • (2007) FEMS Microbiol Ecol , vol.59 , pp. 23-31
    • Kojima, H.1    Nakajima, T.2    Fukui, M.3
  • 22
    • 0345448189 scopus 로고
    • Über die schwefelbakterie
    • Kolkwitz R (1955) Über die schwefelbakterie. Ber Deut Bot Ges 68 : 374 380.
    • (1955) Ber Deut Bot Ges , vol.68 , pp. 374-380
    • Kolkwitz, R.1
  • 23
    • 0000691072 scopus 로고
    • Die schlammflora der Ostholsteinischen Seen und des Bodensess
    • Koppe F (1922) Die schlammflora der Ostholsteinischen Seen und des Bodensess. Arch Hydrobiol 14 : 619 672.
    • (1922) Arch Hydrobiol , vol.14 , pp. 619-672
    • Koppe, F.1
  • 24
    • 0842277241 scopus 로고    scopus 로고
    • Impact of polychatetes (Nereis spp. and Arenicola marina) on carbon biogeochemistry in coastal marine sediments
    • Kristensen E (2001) Impact of polychatetes (Nereis spp. and Arenicola marina) on carbon biogeochemistry in coastal marine sediments. Geochem Trans 2 : 92 103.
    • (2001) Geochem Trans , vol.2 , pp. 92-103
    • Kristensen, E.1
  • 26
    • 0002257640 scopus 로고
    • - pools associated with deposited phytoplankton in a marine sediment (Aarhus Bight, Denmark)
    • - pools associated with deposited phytoplankton in a marine sediment (Aarhus Bight, Denmark). Mar Ecol Prog Ser 61 : 97 105.
    • (1990) Mar Ecol Prog ser , vol.61 , pp. 97-105
    • Lomstein, E.1    Jensen, M.H.2    Sørensen, J.3
  • 27
    • 2542523843 scopus 로고    scopus 로고
    • ARB: A software environment for sequence data
    • Ludwig W, Strunk O, Westram R et al 2004) ARB: a software environment for sequence data. Nucleic Acids Res 32 : 1363 1371.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1363-1371
    • Ludwig, W.1    Strunk, O.2    Westram, R.3
  • 28
    • 0013792235 scopus 로고
    • Fine structure of Thioploca ingrica and a comparison with Beggiatoa
    • Maier S Murray RGE (1965) Fine structure of Thioploca ingrica and a comparison with Beggiatoa. Can J Microbiol 11 : 645 652.
    • (1965) Can J Microbiol , vol.11 , pp. 645-652
    • Maier, S.1    Murray, R.G.E.2
  • 29
    • 0001695631 scopus 로고
    • Occurrence of Thioploca in Lake Constance and Lower Saxony, Germany
    • Maier S Preissner WC (1979) Occurrence of Thioploca in Lake Constance and Lower Saxony, Germany. Microb Ecol 5 : 117 119.
    • (1979) Microb Ecol , vol.5 , pp. 117-119
    • Maier, S.1    Preissner, W.C.2
  • 30
  • 32
    • 0027460328 scopus 로고
    • Profiling of complex microbial-populations by denaturing gradient gel-electrophoresis analysis of polymerase chain reaction-amplified genes-coding for 16S ribosomal-RNA
    • Muyzer G, Dewaal EC Uitterlinden AG (1993) Profiling of complex microbial-populations by denaturing gradient gel-electrophoresis analysis of polymerase chain reaction-amplified genes-coding for 16S ribosomal-RNA. Appl Environ Microb 59 : 695 700.
    • (1993) Appl Environ Microb , vol.59 , pp. 695-700
    • Muyzer, G.1    Dewaal, E.C.2    Uitterlinden, A.G.3
  • 33
    • 0035675051 scopus 로고    scopus 로고
    • Quantification of pelagic filamentous microorganisms in aquatic environments using the line-intercept method
    • Nedoma J, Vrba J, Hanzl T Nedbalova L (2001) Quantification of pelagic filamentous microorganisms in aquatic environments using the line-intercept method. FEMS Microbiol Ecol 38 : 81 85.
    • (2001) FEMS Microbiol Ecol , vol.38 , pp. 81-85
    • Nedoma, J.1    Vrba, J.2    Hanzl, T.3    Nedbalova, L.4
  • 34
    • 0019387950 scopus 로고
    • Use of reduced sulfur-compounds by Beggiatoa Sp
    • Nelson DC Castenholz RW (1981) Use of reduced sulfur-compounds by Beggiatoa Sp. J Bacteriol 147 : 140 154.
    • (1981) J Bacteriol , vol.147 , pp. 140-154
    • Nelson, D.C.1    Castenholz, R.W.2
  • 35
    • 0000038544 scopus 로고
    • A method of estimating total length of root in a sample
    • Newman EI (1966) A method of estimating total length of root in a sample. J Appl Ecol 3 : 139 145.
    • (1966) J Appl Ecol , vol.3 , pp. 139-145
    • Newman, E.I.1
  • 36
    • 27644486738 scopus 로고    scopus 로고
    • Advances in microscopy: Microautoradiography of single cells
    • Nielsen JL Nielsen PH (2005) Advances in microscopy: microautoradiography of single cells. Method Enzymol 397 : 237 256.
    • (2005) Method Enzymol , vol.397 , pp. 237-256
    • Nielsen, J.L.1    Nielsen, P.H.2
  • 37
    • 4243201594 scopus 로고    scopus 로고
    • Microscale distribution of oxygen and nitrate in sediment inhabited by Nereis diversicolor: Spatial patterns and estimated reaction rates
    • Nielsen OI, Gribsholt B, Kristensen E Revsbech NP (2004) Microscale distribution of oxygen and nitrate in sediment inhabited by Nereis diversicolor: spatial patterns and estimated reaction rates. Aquat Microb Ecol 34 : 23 32.
    • (2004) Aquat Microb Ecol , vol.34 , pp. 23-32
    • Nielsen, O.I.1    Gribsholt, B.2    Kristensen, E.3    Revsbech, N.P.4
  • 38
    • 0032031406 scopus 로고    scopus 로고
    • Dense mats of Thioploca, gliding filamentous sulfur-oxidizing bacteria in Lake Biwa, central Japan
    • Nishino M, Fukui M Nakajima T (1998) Dense mats of Thioploca, gliding filamentous sulfur-oxidizing bacteria in Lake Biwa, central Japan. Water Res 32 : 953 957.
    • (1998) Water Res , vol.32 , pp. 953-957
    • Nishino, M.1    Fukui, M.2    Nakajima, T.3
  • 40
    • 77953184749 scopus 로고
    • The capillary microbial-landscape method in geomicrobiology
    • Gurevich, M.S. ed), Consultants Bureau Enterprise Inc., New York
    • Perfilev BV (1965) The capillary microbial-landscape method in geomicrobiology. Applied Capillary Microscopy (Gurevich MS, ed), pp. 1 8. Consultants Bureau Enterprise Inc., New York.
    • (1965) Applied Capillary Microscopy , pp. 1-8
    • Perfilev, B.V.1
  • 42
    • 33748412889 scopus 로고    scopus 로고
    • Evidence for complete denitrification in a benthic foraminifer
    • Risgaard-Petersen N, Langezaal AM, Ingvardsen S et al 2006) Evidence for complete denitrification in a benthic foraminifer. Nature 443 : 93 96.
    • (2006) Nature , vol.443 , pp. 93-96
    • Risgaard-Petersen, N.1    Langezaal, A.M.2    Ingvardsen, S.3
  • 43
    • 12344281712 scopus 로고    scopus 로고
    • Large sulfur bacteria and the formation of phosphorite
    • Schulz HN Schulz HD (2005) Large sulfur bacteria and the formation of phosphorite. Science 307 : 416 418.
    • (2005) Science , vol.307 , pp. 416-418
    • Schulz, H.N.1    Schulz, H.D.2
  • 44
    • 0033574742 scopus 로고    scopus 로고
    • Dense populations of a giant sulfur bacterium in Namibian shelf sediments
    • Schulz HN, Brinkhoff T, Ferdelman TG, Marine MH Teske A (1999) Dense populations of a giant sulfur bacterium in Namibian shelf sediments. Science 284 : 493 495.
    • (1999) Science , vol.284 , pp. 493-495
    • Schulz, H.N.1    Brinkhoff, T.2    Ferdelman, T.G.3    Marine, M.H.4    Teske, A.5
  • 45
    • 0001084308 scopus 로고    scopus 로고
    • Population study of the filamentous sulfur bacteria Thioploca spp. off the Bay of Concepción, Chile
    • Schulz HN, Strotmann B, Gallardo VA Jørgensen BB (2000) Population study of the filamentous sulfur bacteria Thioploca spp. off the Bay of Concepción, Chile. Mar Ecol-Prog Ser 200 : 117 126.
    • (2000) Mar Ecol-Prog ser , vol.200 , pp. 117-126
    • Schulz, H.N.1    Strotmann, B.2    Gallardo, V.A.3    Jørgensen, B.B.4
  • 46
    • 0030066830 scopus 로고    scopus 로고
    • Phylogeny of Thioploca and related filamentous sulfide-oxidizing bacteria
    • Teske A, Ramsing NB, Kuver J Fossing H (1996) Phylogeny of Thioploca and related filamentous sulfide-oxidizing bacteria. Syst Appl Microbiol 18 : 517 526.
    • (1996) Syst Appl Microbiol , vol.18 , pp. 517-526
    • Teske, A.1    Ramsing, N.B.2    Kuver, J.3    Fossing, H.4
  • 47
    • 33750609472 scopus 로고    scopus 로고
    • Microbial diversity in natural environments: Focusing on fundamental questions
    • Ward DM (2006) Microbial diversity in natural environments: focusing on fundamental questions. Anton Leeuw Int J G 90 : 309 324.
    • (2006) Anton Leeuw Int J G , vol.90 , pp. 309-324
    • Ward, D.M.1
  • 48
    • 0001188782 scopus 로고
    • Thioploca ingrica nov. spec
    • Wislouch SM (1912) Thioploca ingrica nov. spec. Ber Deut Bot Ges 30 : 470 474.
    • (1912) Ber Deut Bot Ges , vol.30 , pp. 470-474
    • Wislouch, S.M.1


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