-
1
-
-
0016355478
-
A new look at the statistical model identification
-
Akaike H. A new look at the statistical model identification. IEEE Trans. Automat. Control 1974, 19(6):716-723.
-
(1974)
IEEE Trans. Automat. Control
, vol.19
, Issue.6
, pp. 716-723
-
-
Akaike, H.1
-
2
-
-
0032713236
-
Detecting population expansion and decline using microsatellites
-
Beaumont M.A. Detecting population expansion and decline using microsatellites. Genetics 1999, 153(4):2013-2029.
-
(1999)
Genetics
, vol.153
, Issue.4
, pp. 2013-2029
-
-
Beaumont, M.A.1
-
3
-
-
78149388939
-
Approximate Bayesian computation in evolution and ecology
-
Beaumont M.A. Approximate Bayesian computation in evolution and ecology. Annu. Rev. Ecol. Evol. Syst. 2010, 41:379-406.
-
(2010)
Annu. Rev. Ecol. Evol. Syst.
, vol.41
, pp. 379-406
-
-
Beaumont, M.A.1
-
4
-
-
0036964474
-
Approximate Bayesian computation in population genetics
-
Beaumont M.A., Zhang W., Balding D.J. Approximate Bayesian computation in population genetics. Genetics 2002, 162(4):2025-2035.
-
(2002)
Genetics
, vol.162
, Issue.4
, pp. 2025-2035
-
-
Beaumont, M.A.1
Zhang, W.2
Balding, D.J.3
-
5
-
-
78349236158
-
Genetic bottlenecks driven by population disconnection
-
Broquet T., Angelone S., Jaquiery J., Joly P., Lena J.-P., Lengagne T., Plenet S., Luquet E., Perrin N. Genetic bottlenecks driven by population disconnection. Conserv. Biol. 2010, 24(6):1596-1605.
-
(2010)
Conserv. Biol.
, vol.24
, Issue.6
, pp. 1596-1605
-
-
Broquet, T.1
Angelone, S.2
Jaquiery, J.3
Joly, P.4
Lena, J.-P.5
Lengagne, T.6
Plenet, S.7
Luquet, E.8
Perrin, N.9
-
6
-
-
34547883224
-
Bayesian clustering algorithms ascertaining spatial population structure: a new computer program and a comparison study
-
Chen C., Durand E., Forbes F., François O. Bayesian clustering algorithms ascertaining spatial population structure: a new computer program and a comparison study. Mol. Ecol. Notes 2007, 7(5):747-756.
-
(2007)
Mol. Ecol. Notes
, vol.7
, Issue.5
, pp. 747-756
-
-
Chen, C.1
Durand, E.2
Forbes, F.3
François, O.4
-
7
-
-
78951476873
-
The confounding effects of population structure, genetic diversity and the sampling scheme on the detection and quantification of population size changes
-
Chikhi L., Sousa V.C., Luisi P., Goossens B., Beaumont M.A. The confounding effects of population structure, genetic diversity and the sampling scheme on the detection and quantification of population size changes. Genetics 2010, 186(3):983-995.
-
(2010)
Genetics
, vol.186
, Issue.3
, pp. 983-995
-
-
Chikhi, L.1
Sousa, V.C.2
Luisi, P.3
Goossens, B.4
Beaumont, M.A.5
-
8
-
-
7244224987
-
BAPS 2: enhanced possibilities for the analysis of genetic population structure
-
Corander J., Waldmann P., Marttinen P., Sillanpää M.J. BAPS 2: enhanced possibilities for the analysis of genetic population structure. Bioinformatics 2004, 20(15):2363-2369.
-
(2004)
Bioinformatics
, vol.20
, Issue.15
, pp. 2363-2369
-
-
Corander, J.1
Waldmann, P.2
Marttinen, P.3
Sillanpää, M.J.4
-
9
-
-
56649113038
-
Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation
-
Cornuet J.-M., Santos F., Beaumont M.A., Robert C.P., Marin J.-M., Balding D.J., Guillemaud T., Estoup A. Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation. Bioinformatics 2008, 24(23):2713-2719.
-
(2008)
Bioinformatics
, vol.24
, Issue.23
, pp. 2713-2719
-
-
Cornuet, J.-M.1
Santos, F.2
Beaumont, M.A.3
Robert, C.P.4
Marin, J.-M.5
Balding, D.J.6
Guillemaud, T.7
Estoup, A.8
-
10
-
-
33746456056
-
Comment on "Ongoing adaptive evolution of ASPM, a brain size determinant in Homo sapiens" and "Microcephalin, a gene regulating brain size, continues to evolve adaptively in humans"
-
Currat M., Excoffier L., Maddison W., Otto S.P., Ray N., Whitlock M.C., Yeaman S. Comment on "Ongoing adaptive evolution of ASPM, a brain size determinant in Homo sapiens" and "Microcephalin, a gene regulating brain size, continues to evolve adaptively in humans". Science 2006, 313(5784):172.
-
(2006)
Science
, vol.313
, Issue.5784
, pp. 172
-
-
Currat, M.1
Excoffier, L.2
Maddison, W.3
Otto, S.P.4
Ray, N.5
Whitlock, M.C.6
Yeaman, S.7
-
11
-
-
0029559462
-
Coalescents and genealogical structure under neutrality
-
Donnelly P., Tavaré S. Coalescents and genealogical structure under neutrality. Annu. Rev. Genet. 1995, 29(1):401-421.
-
(1995)
Annu. Rev. Genet.
, vol.29
, Issue.1
, pp. 401-421
-
-
Donnelly, P.1
Tavaré, S.2
-
13
-
-
79955937119
-
Inferring population decline and expansion from microsatellite data: A simulation-based evaluation of the msvar method
-
Girod C., Vitalis R., Leblois R., Fréville H. Inferring population decline and expansion from microsatellite data: A simulation-based evaluation of the msvar method. Genetics 2011, 188(1):165-179. URL: http://www.genetics.org/content/188/1/165.abstract.
-
(2011)
Genetics
, vol.188
, Issue.1
, pp. 165-179
-
-
Girod, C.1
Vitalis, R.2
Leblois, R.3
Fréville, H.4
-
14
-
-
33244487793
-
Genetic signature of anthropogenic population collapse in orang-utans
-
Goossens B., Chikhi L., Ancrenaz M., Lackman-Ancrenaz I., Andau P., Bruford M.W. Genetic signature of anthropogenic population collapse in orang-utans. PLoS Biol. 2006, 4(2):e25.
-
(2006)
PLoS Biol.
, vol.4
, Issue.2
-
-
Goossens, B.1
Chikhi, L.2
Ancrenaz, M.3
Lackman-Ancrenaz, I.4
Andau, P.5
Bruford, M.W.6
-
15
-
-
0019827394
-
The number of heterozygous loci between two randomly chosen completely linked sequences of loci in two subdivided population models
-
Griffiths R. The number of heterozygous loci between two randomly chosen completely linked sequences of loci in two subdivided population models. J. Math. Biol. 1981, 12(2):251-261.
-
(1981)
J. Math. Biol.
, vol.12
, Issue.2
, pp. 251-261
-
-
Griffiths, R.1
-
16
-
-
28344432025
-
GENELAND: a computer package for landscape genetics
-
Guillot G., Mortier F., Estoup A. GENELAND: a computer package for landscape genetics. Mol. Ecol. Notes 2005, 5(3):712-715.
-
(2005)
Mol. Ecol. Notes
, vol.5
, Issue.3
, pp. 712-715
-
-
Guillot, G.1
Mortier, F.2
Estoup, A.3
-
17
-
-
84911926943
-
Acceleration of evolutionary spread by long-range dispersal
-
Hallatschek O., Fisher D.S. Acceleration of evolutionary spread by long-range dispersal. Proc. Natl. Acad. Sci. 2014, 111(46):E4911-E4919.
-
(2014)
Proc. Natl. Acad. Sci.
, vol.111
, Issue.46
, pp. E4911-E4919
-
-
Hallatschek, O.1
Fisher, D.S.2
-
18
-
-
84877134593
-
The confounding effect of population structure on Bayesian skyline plot inferences of demographic history
-
Heller R., Chikhi L., Siegismund H.R. The confounding effect of population structure on Bayesian skyline plot inferences of demographic history. PLoS One 2013, 8(5):e62992.
-
(2013)
PLoS One
, vol.8
, Issue.5
-
-
Heller, R.1
Chikhi, L.2
Siegismund, H.R.3
-
20
-
-
0036184745
-
Generating samples under a Wright-Fisher neutral model of genetic variation
-
Hudson R.R. Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 2002, 18(2):337-338. URL: http://bioinformatics.oxfordjournals.org/content/18/2/337.abstract.
-
(2002)
Bioinformatics
, vol.18
, Issue.2
, pp. 337-338
-
-
Hudson, R.R.1
-
21
-
-
0001935493
-
Gene genealogies and the coalescent process
-
Hudson R.R., et al. Gene genealogies and the coalescent process. Oxf. Surv. Evol. Biol. 1990, 7(1):44.
-
(1990)
Oxf. Surv. Evol. Biol.
, vol.7
, Issue.1
, pp. 44
-
-
Hudson, R.R.1
-
22
-
-
23744500479
-
SciPy: Open source scientific tools for Python
-
[Online; accessed 18.11.14]
-
Jones, E., Oliphant, T., Peterson, P., et al. 2001. SciPy: Open source scientific tools for Python. [Online; accessed 18.11.14]. http://www.scipy.org/.
-
(2001)
-
-
Jones, E.1
Oliphant, T.2
Peterson, P.3
-
23
-
-
0001358930
-
The stepping stone model of population structure and the decrease of genetic correlation with distance
-
Kimura M., Weiss G.H. The stepping stone model of population structure and the decrease of genetic correlation with distance. Genetics 1964, 49(4):561-576.
-
(1964)
Genetics
, vol.49
, Issue.4
, pp. 561-576
-
-
Kimura, M.1
Weiss, G.H.2
-
24
-
-
33749828614
-
Genetics of recent habitat contraction and reduction in population size: does isolation by distance matter?
-
Leblois R., Estoup A., Streiff R. Genetics of recent habitat contraction and reduction in population size: does isolation by distance matter?. Mol. Ecol. 2006, 15(12):3601-3615.
-
(2006)
Mol. Ecol.
, vol.15
, Issue.12
, pp. 3601-3615
-
-
Leblois, R.1
Estoup, A.2
Streiff, R.3
-
25
-
-
33749828614
-
Genetics of recent habitat contraction and reduction in population size: does isolation by distance matter?
-
Leblois R., Estoup A., Streiff R. Genetics of recent habitat contraction and reduction in population size: does isolation by distance matter?. Mol. Ecol. 2006, 15(12):3601-3615.
-
(2006)
Mol. Ecol.
, vol.15
, Issue.12
, pp. 3601-3615
-
-
Leblois, R.1
Estoup, A.2
Streiff, R.3
-
26
-
-
79960914105
-
Inference of human population history from individual whole-genome sequences
-
Li H., Durbin R. Inference of human population history from individual whole-genome sequences. Nature 2011, 475(7357):493-496.
-
(2011)
Nature
, vol.475
, Issue.7357
, pp. 493-496
-
-
Li, H.1
Durbin, R.2
-
27
-
-
84982082496
-
Inference of Gorilla demographic and selective history from whole genome sequence data
-
McManus K.F., Kelley J.L., Song S., Veeramah K., Woerner A.E., Stevison L.S., Ryder O.A., Kidd J.M., Wall J.D., Bustamante C.D., Hammer M. Inference of Gorilla demographic and selective history from whole genome sequence data. Mol. Biol. Evol. 2015, 600-612.
-
(2015)
Mol. Biol. Evol.
, pp. 600-612
-
-
McManus, K.F.1
Kelley, J.L.2
Song, S.3
Veeramah, K.4
Woerner, A.E.5
Stevison, L.S.6
Ryder, O.A.7
Kidd, J.M.8
Wall, J.D.9
Bustamante, C.D.10
Hammer, M.11
-
28
-
-
0027237436
-
Effective population size, genetic diversity, and coalescence time in subdivided populations
-
Nei M., Takahata N. Effective population size, genetic diversity, and coalescence time in subdivided populations. J. Mol. Evol. 1993, 37(3):240-244.
-
(1993)
J. Mol. Evol.
, vol.37
, Issue.3
, pp. 240-244
-
-
Nei, M.1
Takahata, N.2
-
29
-
-
0000238336
-
A simplex method for function minimization
-
Nelder J.A., Mead R. A simplex method for function minimization. Comput. J. 1965, 7(4):308-313.
-
(1965)
Comput. J.
, vol.7
, Issue.4
, pp. 308-313
-
-
Nelder, J.A.1
Mead, R.2
-
30
-
-
61649119281
-
Statistical inferences in phylogeography
-
Nielsen R., Beaumont M.A. Statistical inferences in phylogeography. Mol. Ecol. 2009, 18(6):1034-1047.
-
(2009)
Mol. Ecol.
, vol.18
, Issue.6
, pp. 1034-1047
-
-
Nielsen, R.1
Beaumont, M.A.2
-
31
-
-
44149100979
-
From genetic diversity and structure to conservation: genetic signature of recent population declines in three mouse lemur species (Microcebus spp.)
-
Olivieri G.L., Sousa V., Chikhi L., Radespiel U. From genetic diversity and structure to conservation: genetic signature of recent population declines in three mouse lemur species (Microcebus spp.). Biol. Conserv. 2008, 141(5):1257-1271.
-
(2008)
Biol. Conserv.
, vol.141
, Issue.5
, pp. 1257-1271
-
-
Olivieri, G.L.1
Sousa, V.2
Chikhi, L.3
Radespiel, U.4
-
32
-
-
84879016166
-
The demographic history of populations experiencing asymmetric gene flow: combining simulated and empirical data
-
Paz-Vinas I., Quéméré E., Chikhi L., Loot G., Blanchet S. The demographic history of populations experiencing asymmetric gene flow: combining simulated and empirical data. Mol. Ecol. 2013, 22(12):3279-3291.
-
(2013)
Mol. Ecol.
, vol.22
, Issue.12
, pp. 3279-3291
-
-
Paz-Vinas, I.1
Quéméré, E.2
Chikhi, L.3
Loot, G.4
Blanchet, S.5
-
33
-
-
78149423210
-
Distinguishing between population bottleneck and population subdivision by a Bayesian model choice procedure
-
Peter B.M., Wegmann D., Excoffier L. Distinguishing between population bottleneck and population subdivision by a Bayesian model choice procedure. Mol. Ecol. 2010, 19(21):4648-4660.
-
(2010)
Mol. Ecol.
, vol.19
, Issue.21
, pp. 4648-4660
-
-
Peter, B.M.1
Wegmann, D.2
Excoffier, L.3
-
34
-
-
0034118493
-
Inference of population structure using multilocus genotype data
-
Pritchard J.K., Stephens M., Donnelly P. Inference of population structure using multilocus genotype data. Genetics 2000, 155(2):945-959.
-
(2000)
Genetics
, vol.155
, Issue.2
, pp. 945-959
-
-
Pritchard, J.K.1
Stephens, M.2
Donnelly, P.3
-
35
-
-
84864703849
-
Genetic data suggest a natural prehuman origin of open habitats in northern Madagascar and question the deforestation narrative in this region
-
Quéméré E., Amelot X., Pierson J., Crouau-Roy B., Chikhi L. Genetic data suggest a natural prehuman origin of open habitats in northern Madagascar and question the deforestation narrative in this region. Proc. Natl. Acad. Sci. 2012, 109(32):13028-13033.
-
(2012)
Proc. Natl. Acad. Sci.
, vol.109
, Issue.32
, pp. 13028-13033
-
-
Quéméré, E.1
Amelot, X.2
Pierson, J.3
Crouau-Roy, B.4
Chikhi, L.5
-
36
-
-
0026548159
-
Population growth makes waves in the distribution of pairwise genetic differences
-
Rogers A.R., Harpending H. Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol. 1992, 9(3):552-569.
-
(1992)
Mol. Biol. Evol.
, vol.9
, Issue.3
, pp. 552-569
-
-
Rogers, A.R.1
Harpending, H.2
-
37
-
-
84865173885
-
Signature of a pre-human population decline in the critically endangered Reunion Island endemic forest bird Coracina newtoni
-
Salmona J., Salamolard M., Fouillot D., Ghestemme T., Larose J., Centon J.-F., Sousa V., Dawson D.A., Thebaud C., Chikhi L. Signature of a pre-human population decline in the critically endangered Reunion Island endemic forest bird Coracina newtoni. PLoS One 2012, 7(8):e43524.
-
(2012)
PLoS One
, vol.7
, Issue.8
-
-
Salmona, J.1
Salamolard, M.2
Fouillot, D.3
Ghestemme, T.4
Larose, J.5
Centon, J.-F.6
Sousa, V.7
Dawson, D.A.8
Thebaud, C.9
Chikhi, L.10
-
38
-
-
84905572361
-
Inferring human population size and separation history from multiple genome sequences
-
Schiffels S., Durbin R. Inferring human population size and separation history from multiple genome sequences. Nature Genet. 2014.
-
(2014)
Nature Genet.
-
-
Schiffels, S.1
Durbin, R.2
-
39
-
-
84859974526
-
Population divergence with or without admixture: selecting models using an ABC approach
-
Sousa V.C., Beaumont M.A., Fernandes P., Coelho M.M., Chikhi L. Population divergence with or without admixture: selecting models using an ABC approach. Heredity 2012, 108(5):521-530. URL: http://dx.doi.org/10.1038/hdy.2011.116.
-
(2012)
Heredity
, vol.108
, Issue.5
, pp. 521-530
-
-
Sousa, V.C.1
Beaumont, M.A.2
Fernandes, P.3
Coelho, M.M.4
Chikhi, L.5
-
40
-
-
67849119548
-
The impact of sampling schemes on the site frequency spectrum in nonequilibrium subdivided populations
-
Städler T., Haubold B., Merino C., Stephan W., Pfaffelhuber P. The impact of sampling schemes on the site frequency spectrum in nonequilibrium subdivided populations. Genetics 2009, 182(1):205-216.
-
(2009)
Genetics
, vol.182
, Issue.1
, pp. 205-216
-
-
Städler, T.1
Haubold, B.2
Merino, C.3
Stephan, W.4
Pfaffelhuber, P.5
-
43
-
-
0032736182
-
Nonequilibrium migration in human history
-
Wakeley J. Nonequilibrium migration in human history. Genetics 1999, 153(4):1863-1871.
-
(1999)
Genetics
, vol.153
, Issue.4
, pp. 1863-1871
-
-
Wakeley, J.1
-
44
-
-
0001771498
-
Evolution in Mendelian populations
-
Wright S. Evolution in Mendelian populations. Genetics 1931, 16(2):97.
-
(1931)
Genetics
, vol.16
, Issue.2
, pp. 97
-
-
Wright, S.1
|