-
1
-
-
80054944901
-
Role of the commensal microbiota in normal and pathogenic host immune responses
-
Littman DR, Pamer EG. Role of the commensal microbiota in normal and pathogenic host immune responses. Cell Host Microbe 2011, 10:311-323.
-
(2011)
Cell Host Microbe
, vol.10
, pp. 311-323
-
-
Littman, D.R.1
Pamer, E.G.2
-
2
-
-
84860484915
-
The airway microbiota in cystic fibrosis: a complex fungal and bacterial community-implications for therapeutic management
-
Delhaes L, Monchy S, Frealle E, Hubans C, Salleron J, Leroy S, Prevotat A, Wallet F, Wallaert B, Dei-Cas E, Sime-Ngando T, Chabé M, Viscogliosi E. The airway microbiota in cystic fibrosis: a complex fungal and bacterial community-implications for therapeutic management. PLoS One 2012, 7:e36313.
-
(2012)
PLoS One
, vol.7
, pp. e36313
-
-
Delhaes, L.1
Monchy, S.2
Frealle, E.3
Hubans, C.4
Salleron, J.5
Leroy, S.6
Prevotat, A.7
Wallet, F.8
Wallaert, B.9
Dei-Cas, E.10
Sime-Ngando, T.11
Chabé, M.12
Viscogliosi, E.13
-
3
-
-
84873405282
-
Asthma-associated differences in microbial composition of induced sputum
-
e341-343
-
Marri PR, Stern DA, Wright AL, Billheimer D, Martinez FD. Asthma-associated differences in microbial composition of induced sputum. J Allergy Clin Immunol 2013, 131:346-352. e341-343.
-
(2013)
J Allergy Clin Immunol
, vol.131
, pp. 346-352
-
-
Marri, P.R.1
Stern, D.A.2
Wright, A.L.3
Billheimer, D.4
Martinez, F.D.5
-
4
-
-
77957302426
-
Analysis of the microbiota of sputum samples from patients with lower respiratory tract infections
-
Zhou Y, Lin P, Li Q, Han L, Zheng H, Wei Y, Cui Z, Ni Y, Guo X. Analysis of the microbiota of sputum samples from patients with lower respiratory tract infections. Acta Biochim Biophys Sin (Shanghai) 2010, 42:754-761.
-
(2010)
Acta Biochim Biophys Sin (Shanghai)
, vol.42
, pp. 754-761
-
-
Zhou, Y.1
Lin, P.2
Li, Q.3
Han, L.4
Zheng, H.5
Wei, Y.6
Cui, Z.7
Ni, Y.8
Guo, X.9
-
5
-
-
84867563577
-
Microbiome diversity in the bronchial tracts of patients with chronic obstructive pulmonary disease
-
Cabrera-Rubio R, Garcia-Nunez M, Seto L, Anto JM, Moya A, Monso E, Mira A. Microbiome diversity in the bronchial tracts of patients with chronic obstructive pulmonary disease. J Clin Microbiol 2012, 50:3562-3568.
-
(2012)
J Clin Microbiol
, vol.50
, pp. 3562-3568
-
-
Cabrera-Rubio, R.1
Garcia-Nunez, M.2
Seto, L.3
Anto, J.M.4
Moya, A.5
Monso, E.6
Mira, A.7
-
6
-
-
84938483264
-
-
Access Date Octuber 30
-
Global Tuberculosis Report 2013 - World Health Organization - WHO. http://www.who.int/tb/publications/global_report/en/. Access Date Octuber 30 2013.
-
(2013)
-
-
-
7
-
-
84876421672
-
Tuberculosis: from an incurable scourge to a curable disease-journey over a millennium
-
Sharma SK, Mohan A. Tuberculosis: from an incurable scourge to a curable disease-journey over a millennium. Indian J Med Res 2013, 137:455-493.
-
(2013)
Indian J Med Res
, vol.137
, pp. 455-493
-
-
Sharma, S.K.1
Mohan, A.2
-
8
-
-
84869866892
-
Complex sputum microbial composition in patients with pulmonary tuberculosis
-
Cui Z, Zhou Y, Li H, Zhang Y, Zhang S, Tang S, Guo X. Complex sputum microbial composition in patients with pulmonary tuberculosis. BMC Microbiol 2012, 12:276.
-
(2012)
BMC Microbiol
, vol.12
, pp. 276
-
-
Cui, Z.1
Zhou, Y.2
Li, H.3
Zhang, Y.4
Zhang, S.5
Tang, S.6
Guo, X.7
-
9
-
-
84872854805
-
Sputum microbiota in tuberculosis as revealed by 16S rRNA pyrosequencing
-
Cheung MK, Lam WY, Fung WY, Law PT, Au CH, Nong W, Kam KM, Kwan HS, Tsui SK. Sputum microbiota in tuberculosis as revealed by 16S rRNA pyrosequencing. PLoS One 2013, 8:e54574.
-
(2013)
PLoS One
, vol.8
, pp. e54574
-
-
Cheung, M.K.1
Lam, W.Y.2
Fung, W.Y.3
Law, P.T.4
Au, C.H.5
Nong, W.6
Kam, K.M.7
Kwan, H.S.8
Tsui, S.K.9
-
10
-
-
77953554827
-
Relationship between cystic fibrosis respiratory tract bacterial communities and age, genotype, antibiotics and Pseudomonas aeruginosa
-
Klepac-Ceraj V, Lemon KP, Martin TR, Allgaier M, Kembel SW, Knapp AA, Lory S, Brodie EL, Lynch SV, Bohannan BJ, Green JL, Maurer BA, Kolter R. Relationship between cystic fibrosis respiratory tract bacterial communities and age, genotype, antibiotics and Pseudomonas aeruginosa. Environ Microbiol 2010, 12:1293-1303.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1293-1303
-
-
Klepac-Ceraj, V.1
Lemon, K.P.2
Martin, T.R.3
Allgaier, M.4
Kembel, S.W.5
Knapp, A.A.6
Lory, S.7
Brodie, E.L.8
Lynch, S.V.9
Bohannan, B.J.10
Green, J.L.11
Maurer, B.A.12
Kolter, R.13
-
11
-
-
80053122563
-
Topographical continuity of bacterial populations in the healthy human respiratory tract
-
Charlson ES, Bittinger K, Haas AR, Fitzgerald AS, Frank I, Yadav A, Bushman FD, Collman RG. Topographical continuity of bacterial populations in the healthy human respiratory tract. Am J Respir Crit Care Med 2011, 184:957-963.
-
(2011)
Am J Respir Crit Care Med
, vol.184
, pp. 957-963
-
-
Charlson, E.S.1
Bittinger, K.2
Haas, A.R.3
Fitzgerald, A.S.4
Frank, I.5
Yadav, A.6
Bushman, F.D.7
Collman, R.G.8
-
12
-
-
0023031976
-
Body mass index and incidence of tuberculosis
-
Tverdal A. Body mass index and incidence of tuberculosis. Eur J Respir Dis 1986, 69:355-362.
-
(1986)
Eur J Respir Dis
, vol.69
, pp. 355-362
-
-
Tverdal, A.1
-
13
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
Consortium THMP. Structure, function and diversity of the healthy human microbiome. Nature 2012, 486:207-214.
-
(2012)
Nature
, vol.486
, pp. 207-214
-
-
Consortium, T.H.M.P.1
-
14
-
-
78650868433
-
Disordered microbial communities in the upper respiratory tract of cigarette smokers
-
Charlson ES, Chen J, Custers-Allen R, Bittinger K, Li H, Sinha R, Hwang J, Bushman FD, Collman RG. Disordered microbial communities in the upper respiratory tract of cigarette smokers. PLoS One 2010, 5:e15216.
-
(2010)
PLoS One
, vol.5
, pp. e15216
-
-
Charlson, E.S.1
Chen, J.2
Custers-Allen, R.3
Bittinger, K.4
Li, H.5
Sinha, R.6
Hwang, J.7
Bushman, F.D.8
Collman, R.G.9
-
15
-
-
77955067191
-
Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags
-
Wu GD, Lewis JD, Hoffmann C, Chen YY, Knight R, Bittinger K, Hwang J, Chen J, Berkowsky R, Nessel L, Li H, Bushman FD. Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags. BMC Microbiol 2010, 10:206.
-
(2010)
BMC Microbiol
, vol.10
, pp. 206
-
-
Wu, G.D.1
Lewis, J.D.2
Hoffmann, C.3
Chen, Y.Y.4
Knight, R.5
Bittinger, K.6
Hwang, J.7
Chen, J.8
Berkowsky, R.9
Nessel, L.10
Li, H.11
Bushman, F.D.12
-
16
-
-
40149103278
-
Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
-
Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R. Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods 2008, 5:235-237.
-
(2008)
Nat Methods
, vol.5
, pp. 235-237
-
-
Hamady, M.1
Walker, J.J.2
Harris, J.K.3
Gold, N.J.4
Knight, R.5
-
17
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pena AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 2010, 7:335-336.
-
(2010)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Pena, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
Huttley, G.A.11
Kelley, S.T.12
Knights, D.13
Koenig, J.E.14
Ley, R.E.15
Lozupone, C.A.16
McDonald, D.17
Muegge, B.D.18
Pirrung, M.19
Reeder, J.20
Sevinsky, J.R.21
Turnbaugh, P.J.22
Walters, W.A.23
Widmann, J.24
Yatsunenko, T.25
Zaneveld, J.26
Knight, R.27
more..
-
18
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P, Andersen GL. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 2006, 72:5069-5072.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.L.10
-
19
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang Q, Garrity GM, Tiedje JM, Cole JR. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 2007, 73:5261-5267.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
20
-
-
78650857856
-
Comparative analyses of the bacterial microbiota of the human nostril and oropharynx
-
e00129-10
-
Lemon KP, Klepac-Ceraj V, Schiffer HK, Brodie EL, Lynch SV, Kolter R. Comparative analyses of the bacterial microbiota of the human nostril and oropharynx. MBio 2010, 1:e00129-10.
-
(2010)
MBio
, vol.1
-
-
Lemon, K.P.1
Klepac-Ceraj, V.2
Schiffer, H.K.3
Brodie, E.L.4
Lynch, S.V.5
Kolter, R.6
-
21
-
-
84878708884
-
Pyrosequencing analysis of the human microbiota of healthy Chinese undergraduates
-
Ling Z, Liu X, Luo Y, Yuan L, Nelson KE, Wang Y, Xiang C, Li L. Pyrosequencing analysis of the human microbiota of healthy Chinese undergraduates. BMC Genomics 2013, 14:390.
-
(2013)
BMC Genomics
, vol.14
, pp. 390
-
-
Ling, Z.1
Liu, X.2
Luo, Y.3
Yuan, L.4
Nelson, K.E.5
Wang, Y.6
Xiang, C.7
Li, L.8
-
22
-
-
66249145772
-
Statistical methods for detecting differentially abundant features in clinical metagenomic samples
-
White JR, Nagarajan N, Pop M. Statistical methods for detecting differentially abundant features in clinical metagenomic samples. PLoS Comput Biol 2009, 5:e1000352.
-
(2009)
PLoS Comput Biol
, vol.5
, pp. e1000352
-
-
White, J.R.1
Nagarajan, N.2
Pop, M.3
-
23
-
-
77951945504
-
Identifying biologically relevant differences between metagenomic communities
-
Parks DH, Beiko RG. Identifying biologically relevant differences between metagenomic communities. Bioinformatics 2010, 26:715-721.
-
(2010)
Bioinformatics
, vol.26
, pp. 715-721
-
-
Parks, D.H.1
Beiko, R.G.2
-
25
-
-
19344366809
-
UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi
-
Koljalg U, Larsson KH, Abarenkov K, Nilsson RH, Alexander IJ, Eberhardt U, Erland S, Hoiland K, Kjoller R, Larsson E, Pennanen T, Sen R, Taylor AF, Tedersoo L, Vrålstad T, Ursing BM. UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi. New Phytol 2005, 166:1063-1068.
-
(2005)
New Phytol
, vol.166
, pp. 1063-1068
-
-
Koljalg, U.1
Larsson, K.H.2
Abarenkov, K.3
Nilsson, R.H.4
Alexander, I.J.5
Eberhardt, U.6
Erland, S.7
Hoiland, K.8
Kjoller, R.9
Larsson, E.10
Pennanen, T.11
Sen, R.12
Taylor, A.F.13
Tedersoo, L.14
Vrålstad, T.15
Ursing, B.M.16
-
26
-
-
84879414990
-
Topographic diversity of fungal and bacterial communities in human skin
-
Program NIHISCCS
-
Findley K, Oh J, Yang J, Conlan S, Deming C, Meyer JA, Schoenfeld D, Nomicos E, Park M, Kong HH, Segre JA, . Program NIHISCCS Topographic diversity of fungal and bacterial communities in human skin. Nature 2013, 498:367-370. Program NIHISCCS.
-
(2013)
Nature
, vol.498
, pp. 367-370
-
-
Findley, K.1
Oh, J.2
Yang, J.3
Conlan, S.4
Deming, C.5
Meyer, J.A.6
Schoenfeld, D.7
Nomicos, E.8
Park, M.9
Kong, H.H.10
Segre, J.A.11
|