메뉴 건너뛰기




Volumn 10, Issue 6, 2015, Pages

Inexpensive and highly reproducible cloud-based variant calling of 2,535 human genomes

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; DEMOGRAPHY; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC VARIABILITY; GENOME; HAPLOTYPE; HETEROZYGOSITY; HUMAN; MATHEMATICAL COMPUTING; POPULATION GENETICS; REPRODUCIBILITY; SEQUENCE ALIGNMENT; SINGLE NUCLEOTIDE POLYMORPHISM; CLOUD COMPUTING; ECONOMICS; GENETIC DATABASE; GENETIC VARIATION; HIGH THROUGHPUT SEQUENCING; HUMAN GENOME; PROCEDURES; SOFTWARE;

EID: 84938319470     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0129277     Document Type: Article
Times cited : (14)

References (19)
  • 1
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • 1000 Genomes Project Consortium Oct 467 7319 PMID: 20981092
    • 1000 Genomes Project Consortium. A map of human genome variation from population-scale sequencing. Nature. 2010 Oct; 467(7319):1061-73. doi: 10.1038/nature09534 PMID: 20981092
    • (2010) Nature , pp. 1061-1073
  • 2
    • 84975795680 scopus 로고    scopus 로고
    • An integrated map of genetic variation from 1,092 human genomes
    • 1000 Genomes Project Consortium Nov Available from: PMID: 23128226
    • 1000 Genomes Project Consortium. An integrated map of genetic variation from 1,092 human genomes. Nature. 2012 Nov; 491(7422):56-65. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3498066&tool=pmcentrez&rendertype=abstract. doi: 10.1038/nature11632 PMID: 23128226
    • (2012) Nature , vol.491 , Issue.7422 , pp. 56-65
  • 3
    • 84898639657 scopus 로고    scopus 로고
    • Stormseq: An opensource, user-friendly pipeline for processing personal genomics data in the cloud
    • Jan PMID: 24454756
    • Karczewski KJ, Fernald GH, Martin AR, Snyder M, Tatonetti NP, Dudley JT. STORMSeq: an opensource, user-friendly pipeline for processing personal genomics data in the cloud. PloS one. 2014 Jan; 9(1):e84860. doi: 10.1371/journal.pone.0084860 PMID: 24454756
    • (2014) PloS One , vol.9 , Issue.1 , pp. e84860
    • Karczewski, K.J.1    Fernald, G.H.2    Martin, A.R.3    Snyder, M.4    Tatonetti, N.P.5    Dudley, J.T.6
  • 4
    • 65649120715 scopus 로고    scopus 로고
    • Cloudburst: Highly sensitive read mapping with mapreduce
    • Jun (Oxford, England) Available from
    • Schatz MC. CloudBurst: highly sensitive read mapping with MapReduce. Bioinformatics (Oxford, England). 2009 Jun; 25(11):1363-9. Available from: http://www.pubmedcentral.nih.gov/articlerender. fcgi?artid=2682523&tool=pmcentrez&rendertype=abstract.
    • (2009) Bioinformatics , vol.25 , Issue.11 , pp. 1363-1369
    • Schatz, M.C.1
  • 5
    • 72849149423 scopus 로고    scopus 로고
    • Searching for snps with cloud computing
    • Jan PMID: 19930550
    • Langmead B, Schatz MC, Lin J, Pop M, Salzberg SL. Searching for SNPs with cloud computing. Genome biology. 2009 Jan; 10(11):R134. doi: 10.1186/gb-2009-10-11-r134 PMID: 19930550
    • (2009) Genome Biology , vol.10 , Issue.11 , pp. R134
    • Langmead, B.1    Schatz, M.C.2    Lin, J.3    Pop, M.4    Salzberg, S.L.5
  • 6
    • 84893024407 scopus 로고    scopus 로고
    • Launching genomics into the cloud: Deployment of mercury, a next generation sequence analysis pipeline
    • Jan PMID: 24475911
    • Reid JG, Carroll A, Veeraraghavan N, Dahdouli M, Sundquist A, English A, et al. Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline. BMC bioinformatics. 2014 Jan; 15(1):30. doi: 10.1186/1471-2105-15-30 PMID: 24475911
    • (2014) BMC Bioinformatics , vol.15 , Issue.1 , pp. 30
    • Reid, J.G.1    Carroll, A.2    Veeraraghavan, N.3    Dahdouli, M.4    Sundquist, A.5    English, A.6
  • 7
    • 84897705749 scopus 로고    scopus 로고
    • Cloud processing of 1000 genomes sequencing data using amazon web service
    • Available from
    • Huang Z, Yu J, Yu F. Cloud processing of 1000 genomes sequencing data using Amazon Web Service. In: 2013 IEEE Global Conference on Signal and Information Processing. IEEE; 2013. p. 49-52. Available from: http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=6736809.
    • (2013) 2013 IEEE Global Conference on Signal and Information Processing. IEEE , pp. 49-52
    • Huang, Z.1    Yu, J.2    Yu, F.3
  • 9
    • 84895760521 scopus 로고    scopus 로고
    • Characterizing bias in population genetic inferences from low-coverage sequencing data
    • Mar PMID: 24288159
    • Han E, Sinsheimer JS, Novembre J. Characterizing bias in population genetic inferences from low-coverage sequencing data. Molecular biology and evolution. 2014 Mar; 31(3):723-35. doi: 10.1093/molbev/mst229 PMID: 24288159
    • (2014) Molecular Biology and Evolution , vol.31 , Issue.3 , pp. 723-735
    • Han, E.1    Sinsheimer, J.S.2    Novembre, J.3
  • 11
    • 84870310949 scopus 로고    scopus 로고
    • An economic and energy-Aware analysis of the viability of outsourcing cluster computing to a cloud
    • Mar Available from
    • de Alfonso C, Caballer M, Alvarruiz F, Moltó G. An economic and energy-Aware analysis of the viability of outsourcing cluster computing to a cloud. Future Generation Computer Systems. 2013 Mar; 29 (3):704-712. Available from: http://www.sciencedirect.com/science/article/pii/S0167739X12001720. doi: 10.1016/j.future.2012.08.014
    • (2013) Future Generation Computer Systems , vol.29 , Issue.3 , pp. 704-712
    • De Alfonso, C.1    Caballer, M.2    Alvarruiz, F.3    Moltó, G.4
  • 12
    • 84922553800 scopus 로고    scopus 로고
    • The cancer genomics hub (cghub): Overcoming cancer through the power of torrential data
    • Jan 2014. Available from
    • Wilks C, Cline MS, Weiler E, Diehkans M, Craft B, Martin C, et al. The Cancer Genomics Hub (CGHub): overcoming cancer through the power of torrential data. Database: the journal of biological databases and curation. 2014 Jan; 2014. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi? artid=4178372&tool=pmcentrez&rendertype=abstract. doi: 10.1093/database/bau093
    • (2014) Database: The Journal of Biological Databases and Curation
    • Wilks, C.1    Cline, M.S.2    Weiler, E.3    Diehkans, M.4    Craft, B.5    Martin, C.6
  • 14
    • 84876078233 scopus 로고    scopus 로고
    • Atlas2 cloud: A framework for personal genome analysis in the cloud
    • Jan(Suppl 6 PMID: 23134663
    • Evani US, Challis D, Yu J, Jackson AR, Paithankar S, Bainbridge MN, et al. Atlas2 Cloud: a framework for personal genome analysis in the cloud. BMC genomics. 2012 Jan; 13 Suppl 6(Suppl 6):S19. doi: 10. 1186/1471-2164-13-S6-S19 PMID: 23134663
    • (2012) BMC Genomics , vol.13 , pp. S19
    • Evani, U.S.1    Challis, D.2    Yu, J.3    Jackson, A.R.4    Paithankar, S.5    Bainbridge, M.N.6
  • 18
    • 78650841579 scopus 로고    scopus 로고
    • Galaxy cloudman: Delivering cloud compute clusters
    • Jan; 11(Suppl 12 PMID: 21210983
    • Afgan E, Baker D, Coraor N, Chapman B, Nekrutenko A, Taylor J. Galaxy CloudMan: delivering cloud compute clusters. BMC bioinformatics. 2010 Jan; 11 Suppl 1(Suppl 12):S4. doi: 10.1186/1471-2105-11-S12-S4 PMID: 21210983
    • (2010) BMC Bioinformatics , pp. S4
    • Afgan, E.1    Baker, D.2    Coraor, N.3    Chapman, B.4    Nekrutenko, A.5    Taylor, J.6
  • 19
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and samtools
    • (Oxford, England) Aug Available from
    • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics (Oxford, England). 2009 Aug; 25(16):2078-9. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2723002&tool=pmcentrez&rendertype=abstract. doi: 10.1093/bioinformatics/btp352
    • (2009) Bioinformatics , vol.25 , Issue.16 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3    Fennell, T.4    Ruan, J.5    Homer, N.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.