-
1
-
-
84885393469
-
Transcriptional regulation by Polycomb group proteins
-
Di Croce, L. & Helin, K. Transcriptional regulation by Polycomb group proteins. Nat. Struct. Mol. Biol. 20, 1147-1155 (2013
-
(2013)
Nat. Struct. Mol. Biol
, vol.20
, pp. 1147-1155
-
-
Di Croce, L.1
Helin, K.2
-
2
-
-
84899482505
-
What are memories made of? How Polycomb and Trithorax proteins mediate epigenetic memory
-
Steffen, P.A. & Ringrose, L. What are memories made of?. How Polycomb and Trithorax proteins mediate epigenetic memory. Nat. Rev. Mol. Cell Biol. 15, 340-356 (2014
-
(2014)
Nat. Rev. Mol. Cell Biol
, vol.15
, pp. 340-356
-
-
Steffen, P.A.1
Ringrose, L.2
-
3
-
-
33748419671
-
Polycomb response elements and targeting of Polycomb group proteins in Drosophila
-
Müller, J. & Kassis, J.A. Polycomb response elements and targeting of Polycomb group proteins in Drosophila. Curr. Opin. Genet. Dev. 16, 476-484 (2006
-
(2006)
Curr. Opin. Genet. Dev
, vol.16
, pp. 476-484
-
-
Müller, J.1
Kassis, J.A.2
-
4
-
-
66349089138
-
Non-coding RNAs in polycomb/trithorax regulation
-
Hekimoglu, B. & Ringrose, L. Non-coding RNAs in polycomb/trithorax regulation. RNA Biol. 6, 129-137 (2009
-
(2009)
RNA Biol
, vol.6
, pp. 129-137
-
-
Hekimoglu, B.1
Ringrose, L.2
-
5
-
-
79957538539
-
RNA templating the epigenome: Long noncoding RNAs as molecular scaffolds
-
Spitale, R.C., Tsai, M.C. & Chang, H.Y. RNA templating the epigenome: long noncoding RNAs as molecular scaffolds. Epigenetics 6, 539-543 (2011
-
(2011)
Epigenetics
, vol.6
, pp. 539-543
-
-
Spitale, R.C.1
Tsai, M.C.2
Chang, H.Y.3
-
6
-
-
84875418596
-
Noncoding RNA and Polycomb recruitment
-
Brockdorff, N. Noncoding RNA and Polycomb recruitment. RNA 19, 429-442 (2013
-
(2013)
RNA
, vol.19
, pp. 429-442
-
-
Brockdorff, N.1
-
7
-
-
34250729138
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
-
Rinn, J.L. et al. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 129, 1311-1323 (2007
-
(2007)
Cell
, vol.129
, pp. 1311-1323
-
-
Rinn, J.L.1
-
8
-
-
55349109963
-
Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome
-
Zhao, J., Sun, B.K., Erwin, J.A., Song, J.J. & Lee, J.T. Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome. Science 322, 750-756 (2008
-
(2008)
Science
, vol.322
, pp. 750-756
-
-
Zhao, J.1
Sun, B.K.2
Erwin, J.A.3
Song, J.J.4
Lee, J.T.5
-
9
-
-
77953107585
-
Short RNAs are transcribed from repressed polycomb target genes and interact with polycomb repressive complex-2
-
Kanhere, A. et al. Short RNAs are transcribed from repressed polycomb target genes and interact with polycomb repressive complex-2. Mol. Cell 38, 675-688 (2010
-
(2010)
Mol. Cell
, vol.38
, pp. 675-688
-
-
Kanhere, A.1
-
10
-
-
78650253763
-
Genome-wide identification of polycomb-associated RNAs by RIP-seq
-
Zhao, J. et al. Genome-wide identification of polycomb-associated RNAs by RIP-seq. Mol. Cell 40, 939-953 (2010
-
(2010)
Mol. Cell
, vol.40
, pp. 939-953
-
-
Zhao, J.1
-
11
-
-
79953748673
-
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
-
Wang, K.C. et al. A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression. Nature 472, 120-124 (2011
-
(2011)
Nature
, vol.472
, pp. 120-124
-
-
Wang, K.C.1
-
12
-
-
84863718299
-
Intronic RNAs mediate EZH2 regulation of epigenetic targets
-
Guil, S. et al. Intronic RNAs mediate EZH2 regulation of epigenetic targets. Nat. Struct. Mol. Biol. 19, 664-670 (2012
-
(2012)
Nat. Struct. Mol. Biol
, vol.19
, pp. 664-670
-
-
Guil, S.1
-
13
-
-
84887419464
-
Promiscuous RNA binding by Polycomb repressive complex 2
-
Davidovich, C., Zheng, L., Goodrich, K.J. & Cech, T.R. Promiscuous RNA binding by Polycomb repressive complex 2. Nat. Struct. Mol. Biol. 20, 1250-1257 (2013
-
(2013)
Nat. Struct. Mol. Biol
, vol.20
, pp. 1250-1257
-
-
Davidovich, C.1
Zheng, L.2
Goodrich, K.J.3
Cech, T.R.4
-
14
-
-
84904507962
-
Regulatory interactions between RNA and Polycomb repressive complex 2
-
29 May 2014
-
Cifuentes-Rojas, C., Hernandez, A.J., Sarma, K. & Lee, J.T. Regulatory interactions between RNA and Polycomb repressive complex 2. Mol. Cell doi: 10.1016/j.molcel.2014.05.009 (29 May 2014
-
Mol. Cell
-
-
Cifuentes-Rojas, C.1
Hernandez, A.J.2
Sarma, K.3
Lee, J.T.4
-
15
-
-
0027483619
-
Allocation of the thoracic imaginal primordia in the Drosophila embryo
-
Cohen, B., Simcox, A.A. & Cohen, S.M. Allocation of the thoracic imaginal primordia in the Drosophila embryo. Development 117, 597-608 (1993
-
(1993)
Development
, vol.117
, pp. 597-608
-
-
Cohen, B.1
Simcox, A.A.2
Cohen, S.M.3
-
16
-
-
0026296832
-
Control of Drosophila wing and haltere development by the nuclear vestigial gene product
-
Williams, J.A., Bell, J.B. & Carroll, S.B. Control of Drosophila wing and haltere development by the nuclear vestigial gene product. Genes Dev. 5, 2481-2495 (1991
-
(1991)
Genes Dev
, vol.5
, pp. 2481-2495
-
-
Williams, J.A.1
Bell, J.B.2
Carroll, S.B.3
-
17
-
-
63049083213
-
Alternative requirements for Vestigial Scalloped, and Dmef2 during muscle differentiation in Drosophila melanogaster
-
Deng, H., Hughes, S.C., Bell, J.B. & Simmonds, A.J. Alternative requirements for Vestigial, Scalloped, and Dmef2 during muscle differentiation in Drosophila melanogaster. Mol. Biol. Cell 20, 256-269 (2009
-
(2009)
Mol. Biol. Cell
, vol.20
, pp. 256-269
-
-
Deng, H.1
Hughes, S.C.2
Bell, J.B.3
Simmonds, A.J.4
-
18
-
-
0042062207
-
Control of apterous by vestigial drives indirect flight muscle development in Drosophila
-
Bernard, F. et al. Control of apterous by vestigial drives indirect flight muscle development in Drosophila. Dev. Biol. 260, 391-403 (2003
-
(2003)
Dev. Biol
, vol.260
, pp. 391-403
-
-
Bernard, F.1
-
19
-
-
51549104471
-
Vestigial expression in the Drosophila embryonic central nervous system
-
Guss, K.A., Mistry, H. & Skeath, J.B. Vestigial expression in the Drosophila embryonic central nervous system. Dev. Dyn. 237, 2483-2489 (2008
-
(2008)
Dev. Dyn
, vol.237
, pp. 2483-2489
-
-
Guss, K.A.1
Mistry, H.2
Skeath, J.B.3
-
20
-
-
78751595020
-
Polycomb preferentially targets stalled promoters of coding and noncoding transcripts
-
Enderle, D. et al. Polycomb preferentially targets stalled promoters of coding and noncoding transcripts. Genome Res. 21, 216-226 (2011
-
(2011)
Genome Res
, vol.21
, pp. 216-226
-
-
Enderle, D.1
-
21
-
-
79953060951
-
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
-
Kharchenko, P.V. et al. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature 471, 480-485 (2011
-
(2011)
Nature
, vol.471
, pp. 480-485
-
-
Kharchenko, P.V.1
-
22
-
-
27744555810
-
Suppression of Polycomb group proteins by JNK signalling induces transdetermination in Drosophila imaginal discs
-
Lee, N., Maurange, C., Ringrose, L. & Paro, R. Suppression of Polycomb group proteins by JNK signalling induces transdetermination in Drosophila imaginal discs. Nature 438, 234-237 (2005
-
(2005)
Nature
, vol.438
, pp. 234-237
-
-
Lee, N.1
Maurange, C.2
Ringrose, L.3
Paro, R.4
-
23
-
-
79960179424
-
Enhancer-PRE communication contributes to the expansion of gene expression domains in proliferating primordia
-
Pérez, L. et al. Enhancer-PRE communication contributes to the expansion of gene expression domains in proliferating primordia. Development 138, 3125-3134 (2011
-
(2011)
Development
, vol.138
, pp. 3125-3134
-
-
Pérez, L.1
-
24
-
-
57049141484
-
Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila
-
Oktaba, K. et al. Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila. Dev. Cell 15, 877-889 (2008
-
(2008)
Dev. Cell
, vol.15
, pp. 877-889
-
-
Oktaba, K.1
-
25
-
-
33745225872
-
Genome-wide analysis of Polycomb targets in Drosophila melanogaster
-
Schwartz, Y.B. et al. Genome-wide analysis of Polycomb targets in Drosophila melanogaster. Nat. Genet. 38, 700-705 (2006
-
(2006)
Nat. Genet
, vol.38
, pp. 700-705
-
-
Schwartz, Y.B.1
-
26
-
-
79952701283
-
Quantitative analysis of polycomb response elements (PREs) at identical genomic locations distinguishes contributions of PRE sequence and genomic environment
-
Okulski, H., Druck, B., Bhalerao, S. & Ringrose, L. Quantitative analysis of polycomb response elements (PREs) at identical genomic locations distinguishes contributions of PRE sequence and genomic environment. Epigenetics Chromatin 4, 4 (2011
-
(2011)
Epigenetics Chromatin
, vol.4
, Issue.4
-
-
Okulski, H.1
Druck, B.2
Bhalerao, S.3
Ringrose, L.4
-
27
-
-
0025221554
-
The embryonic development of larval muscles in Drosophila
-
Bate, M. The embryonic development of larval muscles in Drosophila. Development 110, 791-804 (1990
-
(1990)
Development
, vol.110
, pp. 791-804
-
-
Bate, M.1
-
28
-
-
40949087581
-
The role of Polycomb-group response elements in regulation of engrailed transcription in Drosophila
-
DeVido, S.K., Kwon, D., Brown, J.L. & Kassis, J.A. The role of Polycomb-group response elements in regulation of engrailed transcription in Drosophila. Development 135, 669-676 (2008
-
(2008)
Development
, vol.135
, pp. 669-676
-
-
DeVido, S.K.1
Kwon, D.2
Brown, J.L.3
Kassis, J.A.4
-
29
-
-
78651514974
-
Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila
-
Bantignies, F. et al. Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila. Cell 144, 214-226 (2011
-
(2011)
Cell
, vol.144
, pp. 214-226
-
-
Bantignies, F.1
-
30
-
-
84887460647
-
PRC2 binds active promoters and contacts nascent RNAs in embryonic stem cells
-
Kaneko, S., Son, J., Shen, S.S., Reinberg, D. & Bonasio, R. PRC2 binds active promoters and contacts nascent RNAs in embryonic stem cells. Nat. Struct. Mol. Biol. 20, 1258-1264 (2013
-
(2013)
Nat. Struct. Mol. Biol
, vol.20
, pp. 1258-1264
-
-
Kaneko, S.1
Son, J.2
Shen, S.S.3
Reinberg, D.4
Bonasio, R.5
-
31
-
-
79551610291
-
Genome-wide analysis of promoter architecture in Drosophila melanogaster
-
Hoskins, R.A. et al. Genome-wide analysis of promoter architecture in Drosophila melanogaster. Genome Res. 21, 182-192 (2011
-
(2011)
Genome Res
, vol.21
, pp. 182-192
-
-
Hoskins, R.A.1
-
32
-
-
16644389991
-
Integrated analysis of the genome and the transcriptome by FANTOM
-
Katayama, S., Kanamori, M. & Hayashizaki, Y. Integrated analysis of the genome and the transcriptome by FANTOM. Brief. Bioinform. 5, 249-258 (2004
-
(2004)
Brief. Bioinform
, vol.5
, pp. 249-258
-
-
Katayama, S.1
Kanamori, M.2
Hayashizaki, Y.3
-
33
-
-
44649117905
-
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
-
Chen, X. et al. Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell 133, 1106-1117 (2008
-
(2008)
Cell
, vol.133
, pp. 1106-1117
-
-
Chen, X.1
-
34
-
-
72249119297
-
Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells
-
Peng, J.C. et al. Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells. Cell 139, 1290-1302 (2009
-
(2009)
Cell
, vol.139
, pp. 1290-1302
-
-
Peng, J.C.1
-
35
-
-
84865192845
-
Flowering time control: Another window to the connection between antisense RNA and chromatin
-
Ietswaart, R., Wu, Z. & Dean, C. Flowering time control: another window to the connection between antisense RNA and chromatin. Trends Genet. 28, 445-453 (2012
-
(2012)
Trends Genet
, vol.28
, pp. 445-453
-
-
Ietswaart, R.1
Wu, Z.2
Dean, C.3
-
36
-
-
4444355645
-
Transcription cofactor Vgl-2 is required for skeletal muscle differentiation
-
Chen, H.H., Maeda, T., Mullett, S.J. & Stewart, A.F. Transcription cofactor Vgl-2 is required for skeletal muscle differentiation. Genesis 39, 273-279 (2004
-
(2004)
Genesis
, vol.39
, pp. 273-279
-
-
Chen, H.H.1
Maeda, T.2
Mullett, S.J.3
Stewart, A.F.4
-
37
-
-
84887995915
-
Gene regulation by antisense transcription
-
Pelechano, V. & Steinmetz, L.M. Gene regulation by antisense transcription. Nat. Rev. Genet. 14, 880-893 (2013
-
(2013)
Nat. Rev. Genet
, vol.14
, pp. 880-893
-
-
Pelechano, V.1
Steinmetz, L.M.2
-
38
-
-
0028299150
-
Organization of wing formation and induction of a wing-patterning gene at the dorsal/ventral compartment boundary
-
Williams, J.A., Paddock, S.W., Vorwerk, K. & Carroll, S.B. Organization of wing formation and induction of a wing-patterning gene at the dorsal/ventral compartment boundary. Nature 368, 299-305 (1994
-
(1994)
Nature
, vol.368
, pp. 299-305
-
-
Williams, J.A.1
Paddock, S.W.2
Vorwerk, K.3
Carroll, S.B.4
-
39
-
-
0029901697
-
Integration of positional signals and regulation of wing formation and identity by Drosophila vestigial gene
-
Kim, J. et al. Integration of positional signals and regulation of wing formation and identity by Drosophila vestigial gene. Nature 382, 133-138 (1996
-
(1996)
Nature
, vol.382
, pp. 133-138
-
-
Kim, J.1
-
40
-
-
67349270900
-
Enzymatic assembly of DNA molecules up to several hundred kilobases
-
Gibson, D.G. et al. Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat. Methods 6, 343-345 (2009
-
(2009)
Nat. Methods
, vol.6
, pp. 343-345
-
-
Gibson, D.G.1
-
41
-
-
0030513237
-
FISH in whole-mount Drosophila embryos. RNA: Activation of a transcriptional locus DNA: Gene architecture and expression
-
Gemkow, M.J., Buchenau, P. & Arndt-Jovin, D.J. FISH in whole-mount Drosophila embryos. RNA: activation of a transcriptional locus, DNA: gene architecture and expression. Bioimaging 4, 107-120 (1996
-
(1996)
Bioimaging
, vol.4
, pp. 107-120
-
-
Gemkow, M.J.1
Buchenau, P.2
Arndt-Jovin, D.J.3
-
42
-
-
0030071741
-
Cell cycling and patterned cell proliferation in the wing primordium of Drosophila
-
Milán, M., Campuzano, S. & Garcia-Bellido, A. Cell cycling and patterned cell proliferation in the wing primordium of Drosophila. Proc. Natl. Acad. Sci. USA 93, 640-645 (1996
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 640-645
-
-
Milán, M.1
Campuzano, S.2
Garcia-Bellido, A.3
-
43
-
-
33947095101
-
Model for the regulation of size in the wing imaginal disc of Drosophila
-
Aegerter-Wilmsen, T., Aegerter, C.M., Hafen, E. & Basler, K. Model for the regulation of size in the wing imaginal disc of Drosophila. Mech. Dev. 124, 318-326 (2007
-
(2007)
Mech. Dev
, vol.124
, pp. 318-326
-
-
Aegerter-Wilmsen, T.1
Aegerter, C.M.2
Hafen, E.3
Basler, K.4
-
44
-
-
34447530305
-
A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila
-
Dietzl, G. et al. A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila. Nature 448, 151-156 (2007
-
(2007)
Nature
, vol.448
, pp. 151-156
-
-
Dietzl, G.1
-
45
-
-
84864326647
-
A modular toolset for recombination transgenesis and neurogenetic analysis of Drosophila
-
Wang, J.W., Beck, E.S. & McCabe, B.D. A modular toolset for recombination transgenesis and neurogenetic analysis of Drosophila. PLoS ONE 7, e42102 (2012
-
(2012)
PLoS ONE
, vol.7
, pp. e42102
-
-
Wang, J.W.1
Beck, E.S.2
McCabe, B.D.3
-
46
-
-
84893100512
-
Elements of the polycomb repressor SU(Z)12 needed for histone H3-K27 methylation, the interface with E(Z), and in vivo function
-
Rai, A.N. et al. Elements of the polycomb repressor SU(Z)12 needed for histone H3-K27 methylation, the interface with E(Z), and in vivo function. Mol. Cell. Biol. 33, 4844-4856 (2013
-
(2013)
Mol. Cell. Biol
, vol.33
, pp. 4844-4856
-
-
Rai, A.N.1
-
47
-
-
84878565676
-
Quantitative in vivo analysis of chromatin binding of Polycomb and Trithorax group proteins reveals retention of ASH1 on mitotic chromatin
-
Steffen, P.A. et al. Quantitative in vivo analysis of chromatin binding of Polycomb and Trithorax group proteins reveals retention of ASH1 on mitotic chromatin. Nucleic Acids Res. 41, 5235-5250 (2013
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 5235-5250
-
-
Steffen, P.A.1
-
48
-
-
33845275018
-
-
Keene, J.D., Komisarow, J.M. & Friedersdorf, M.B. RIP-Chip: the isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extracts. Nat. Protoc. 1, 302-307 (2006
-
(2006)
The Isolation and Identification of MRNAs, MicroRNAs and Protein Components of Ribonucleoprotein Complexes from Cell Extracts. Nat. Protoc
, vol.1
, pp. 302-307
-
-
Keene, J.D.1
Komisarow, J.M.2
RIP-Chip, B.F.M.3
-
49
-
-
0032169352
-
Binding of trithorax and Polycomb proteins to the bithorax complex: Dynamic changes during early Drosophila embryogenesis
-
Orlando, V., Jane, E.P., Chinwalla, V., Harte, P.J. & Paro, R. Binding of trithorax and Polycomb proteins to the bithorax complex: dynamic changes during early Drosophila embryogenesis. EMBO J. 17, 5141-5150 (1998
-
(1998)
EMBO J.
, vol.17
, pp. 5141-5150
-
-
Orlando, V.1
Jane, E.P.2
Chinwalla, V.3
Harte, P.J.4
Paro, R.5
-
50
-
-
0030478780
-
The Drosophila Enhancer of zeste gene encodes a chromosomal protein: Examination of wild-type and mutant protein distribution
-
Carrington, E.A. & Jones, R.S. The Drosophila Enhancer of zeste gene encodes a chromosomal protein: examination of wild-type and mutant protein distribution. Development 122, 4073-4083 (1996
-
(1996)
Development
, vol.122
, pp. 4073-4083
-
-
Carrington, E.A.1
Jones, R.S.2
-
51
-
-
62349130698
-
And memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M. & Salzberg, S.L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009
-
(2009)
Genome Biol
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Ultrafast, L.S.S.4
-
52
-
-
84870830152
-
Fast multiple overlaps of genomic regions
-
Aszódi, A. MULTOVL: fast multiple overlaps of genomic regions. Bioinformatics 28, 3318-3319 (2012
-
(2012)
Bioinformatics
, vol.28
, pp. 3318-3319
-
-
Multovl, A.A.1
-
53
-
-
50849090969
-
Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data
-
Valouev, A. et al. Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data. Nat. Methods 5, 829-834 (2008
-
(2008)
Nat. Methods
, vol.5
, pp. 829-834
-
-
Valouev, A.1
-
54
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman, R.C. et al. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 5, R80 (2004
-
(2004)
Genome Biol
, vol.5
, pp. R80
-
-
Gentleman, R.C.1
|