-
1
-
-
77952535003
-
Structure and function of plant photoreceptors
-
Möglich, A., Yang, X., Ayers, R. A. & Moffat, K. Structure and function of plant photoreceptors. Annu. Rev. Plant. Biol. 61, 21-47 (2010).
-
(2010)
Annu. Rev. Plant. Biol.
, vol.61
, pp. 21-47
-
-
Möglich, A.1
Yang, X.2
Ayers, R.A.3
Moffat, K.4
-
2
-
-
84859646883
-
UV-B photoreceptor-mediated signalling in plants
-
Heijde, M. & Ulm, R. UV-B photoreceptor-mediated signalling in plants. Trends Plant Sci. 17, 230-237 (2012).
-
(2012)
Trends Plant Sci.
, vol.17
, pp. 230-237
-
-
Heijde, M.1
Ulm, R.2
-
3
-
-
33745938554
-
Phytochrome structure and signaling mechanisms
-
Rockwell, N. C., Su, Y.-S. & Lagarias, J. C. Phytochrome structure and signaling mechanisms. Annu. Rev. Plant. Biol. 57, 837-858 (2006).
-
(2006)
Annu. Rev. Plant. Biol.
, vol.57
, pp. 837-858
-
-
Rockwell, N.C.1
Su, Y.-S.2
Lagarias, J.C.3
-
4
-
-
72049106410
-
Phytochrome functions in Arabidopsis development
-
Franklin, K. A. & Quail, P. H. Phytochrome functions in Arabidopsis development. J. Exp. Bot. 61, 11-24 (2010).
-
(2010)
J. Exp. Bot.
, vol.61
, pp. 11-24
-
-
Franklin, K.A.1
Quail, P.H.2
-
5
-
-
80755129056
-
Phytochrome signaling mechanisms and the control of plant development
-
Chen, M. & Chory, J. Phytochrome signaling mechanisms and the control of plant development. Trends Cell Biol. 21, 664-671 (2011).
-
(2011)
Trends Cell Biol.
, vol.21
, pp. 664-671
-
-
Chen, M.1
Chory, J.2
-
6
-
-
0032506138
-
Eukaryotic phytochromes: Light-regulated serine/threonine protein kinases with histidine kinase ancestry
-
Yeh, K. C. & Lagarias, J. C. Eukaryotic phytochromes: light-regulated serine/threonine protein kinases with histidine kinase ancestry. Proc. Natl Acad. Sci. USA 95, 13976-13981 (1998).
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 13976-13981
-
-
Yeh, K.C.1
Lagarias, J.C.2
-
7
-
-
0034495430
-
Phytochromes as light-modulated protein kinases
-
Fankhauser, C. Phytochromes as light-modulated protein kinases. Semin. Cell Dev. Biol. 11, 467-473 (2000).
-
(2000)
Semin. Cell Dev. Biol.
, vol.11
, pp. 467-473
-
-
Fankhauser, C.1
-
8
-
-
77950355737
-
Evolutionary studies illuminate the structural-functional model of plant phytochromes
-
Mathews, S. Evolutionary studies illuminate the structural-functional model of plant phytochromes. Plant Cell 22, 4-16 (2010).
-
(2010)
Plant Cell
, vol.22
, pp. 4-16
-
-
Mathews, S.1
-
9
-
-
79956309501
-
The Selaginella genome identifies genetic changes associated with the evolution of vascular plants
-
Banks, J. A. et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science 332, 960-963 (2011).
-
(2011)
Science
, vol.332
, pp. 960-963
-
-
Banks, J.A.1
-
10
-
-
37849032457
-
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants
-
Rensing, S. A. et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science 319, 64-69 (2008).
-
(2008)
Science
, vol.319
, pp. 64-69
-
-
Rensing, S.A.1
-
11
-
-
84989692613
-
Phytochrome evolution: Phytochrome genes in ferns and mosses
-
Schneider-Poetsch, H. A. W., Marx, S., Kolukisaoglu, U., Hanelt, S. & Birgit, B. Phytochrome evolution: phytochrome genes in ferns and mosses. Physiol. Plantarum 91, 241-250 (1994).
-
(1994)
Physiol. Plantarum
, vol.91
, pp. 241-250
-
-
Schneider-Poetsch, H.A.W.1
Marx, S.2
Kolukisaoglu, U.3
Hanelt, S.4
Birgit, B.5
-
12
-
-
0039415336
-
A full length Ty3/gypsy-type retrotransposon in the fern Adiantum
-
Nozue, K., Kanegae, T. & Wada, M. A full length Ty3/gypsy-type retrotransposon in the fern Adiantum. J. Plant Res. 110, 495-499 (1997).
-
(1997)
J. Plant Res.
, vol.110
, pp. 495-499
-
-
Nozue, K.1
Kanegae, T.2
Wada, M.3
-
13
-
-
0027137950
-
The deduced amino acid sequence of phytochrome from Adiantum includes consensus motifs present in phytochrome B from seed plants
-
Okamoto, H. et al. The deduced amino acid sequence of phytochrome from Adiantum includes consensus motifs present in phytochrome B from seed plants. Plant Cell Physiol. 34, 1329-1334 (1993).
-
(1993)
Plant Cell Physiol.
, vol.34
, pp. 1329-1334
-
-
Okamoto, H.1
-
14
-
-
0031934174
-
Characterization and expression of the phytochrome gene family in the moss Ceratodon purpureus
-
Pasentsis, K., Paulo, N., Algarra, P., Dittrich, P. & Thümmler, F. Characterization and expression of the phytochrome gene family in the moss Ceratodon purpureus. Plant J. 13, 51-61 (1998).
-
(1998)
Plant J.
, vol.13
, pp. 51-61
-
-
Pasentsis, K.1
Paulo, N.2
Algarra, P.3
Dittrich, P.4
Thümmler, F.5
-
15
-
-
0034937382
-
Characterization of cDNA of the liverwort phytochrome gene, and phytochrome involvement in the light-dependent and light-independent protochlorophyllide oxidoreductase gene expression in Marchantia paleacea var. Diptera
-
Suzuki, T., Takio, S., Yamamoto, I. & Satoh, T. Characterization of cDNA of the liverwort phytochrome gene, and phytochrome involvement in the light-dependent and light-independent protochlorophyllide oxidoreductase gene expression in Marchantia paleacea var. diptera. Plant Cell Physiol. 42, 576-582 (2001).
-
(2001)
Plant Cell Physiol.
, vol.42
, pp. 576-582
-
-
Suzuki, T.1
Takio, S.2
Yamamoto, I.3
Satoh, T.4
-
16
-
-
0032441898
-
A phytochrome from the fern Adiantum with features of the putative photoreceptor NPH1
-
Nozue, K. et al. A phytochrome from the fern Adiantum with features of the putative photoreceptor NPH1. Proc. Natl Acad. Sci. USA 95, 15826-15830 (1998).
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 15826-15830
-
-
Nozue, K.1
-
17
-
-
26444576503
-
A chimeric photoreceptor gene, NEOCHROME, has arisen twice during plant evolution
-
Suetsugu, N., Mittmann, F., Wagner, G., Hughes, J. & Wada, M. A chimeric photoreceptor gene, NEOCHROME, has arisen twice during plant evolution. Proc. Natl Acad. Sci. USA 102, 13705-13709 (2005).
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 13705-13709
-
-
Suetsugu, N.1
Mittmann, F.2
Wagner, G.3
Hughes, J.4
Wada, M.5
-
18
-
-
84899810515
-
Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns
-
Li, F.-W. et al. Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns. Proc. Natl Acad. Sci. USA 111, 6672-6677 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 6672-6677
-
-
Li, F.-W.1
-
19
-
-
80053896548
-
Phytochrome structure and photochemistry: Recent advances toward a complete molecular picture
-
Ulijasz, A. T. & Vierstra, R. D. Phytochrome structure and photochemistry: recent advances toward a complete molecular picture. Curr. Opin. Plant. Biol. 14, 498-506 (2011).
-
(2011)
Curr. Opin. Plant. Biol.
, vol.14
, pp. 498-506
-
-
Ulijasz, A.T.1
Vierstra, R.D.2
-
20
-
-
84896272142
-
Eukaryotic algal phytochromes span the visible spectrum
-
Rockwell, N. C. et al. Eukaryotic algal phytochromes span the visible spectrum. Proc. Natl Acad. Sci. USA 111, 3871-3876 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 3871-3876
-
-
Rockwell, N.C.1
-
21
-
-
84914674931
-
Marine algae and land plants share conserved phytochrome signaling systems
-
Duanmu, D. et al. Marine algae and land plants share conserved phytochrome signaling systems. Proc. Natl Acad. Sci. USA 111, 15827-15832 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 15827-15832
-
-
Duanmu, D.1
-
22
-
-
84909619344
-
Phylotranscriptomic analysis of the origin and early diversification of land plants
-
Wickett, N. J. et al. Phylotranscriptomic analysis of the origin and early diversification of land plants. Proc. Natl Acad. Sci. USA 111, E4859-E4868 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. E4859-E4868
-
-
Wickett, N.J.1
-
23
-
-
79955464563
-
First insights into fern matK phylogeny
-
Kuo, L.-Y., Li, F.-W., Chiou, W.-L. & Wang, C.-N. First insights into fern matK phylogeny. Mol. Phylogenet. Evol. 59, 556-566 (2011).
-
(2011)
Mol. Phylogenet. Evol.
, vol.59
, pp. 556-566
-
-
Kuo, L.-Y.1
Li, F.-W.2
Chiou, W.-L.3
Wang, C.-N.4
-
24
-
-
79952744371
-
Moss diversity: A molecular phylogenetic analysis of genera
-
Cox, C. J., Goffinet, B., Wickett, N. J., Boles, S. B. & Shaw, A. J. Moss diversity: A molecular phylogenetic analysis of genera. Phytotaxa 9, 175-195 (2010).
-
(2010)
Phytotaxa
, vol.9
, pp. 175-195
-
-
Cox, C.J.1
Goffinet, B.2
Wickett, N.J.3
Boles, S.B.4
Shaw, A.J.5
-
25
-
-
77952492300
-
Molecular phylogeny and revision of the genus Netrium (Zygnematophyceae, Streptophyta): Nucleotaenium gen. Nov
-
Gontcharov, A. A. & Melkonian, M. Molecular phylogeny and revision of the genus Netrium (Zygnematophyceae, Streptophyta): Nucleotaenium gen. nov. J. Phycol. 46, 346-362 (2010).
-
(2010)
J. Phycol.
, vol.46
, pp. 346-362
-
-
Gontcharov, A.A.1
Melkonian, M.2
-
26
-
-
84907704636
-
Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opisthokonts (animals, fungi, choanozoans) and Amoebozoa
-
Cavalier-Smith, T. et al. Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opisthokonts (animals, fungi, choanozoans) and Amoebozoa. Mol. Phylogenet. Evol. 81C, 71-85 (2014).
-
(2014)
Mol. Phylogenet. Evol.
, vol.81 C
, pp. 71-85
-
-
Cavalier-Smith, T.1
-
27
-
-
84859945474
-
The evolutionary history of haptophytes and cryptophytes: Phylogenomic evidence for separate origins
-
Burki, F., Okamoto, N., Pombert, J. F. & Keeling, P. J. The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins. Proc. R. Soc. Lond. B 279, 2246-2254 (2012).
-
(2012)
Proc. R. Soc. Lond. B
, vol.279
, pp. 2246-2254
-
-
Burki, F.1
Okamoto, N.2
Pombert, J.F.3
Keeling, P.J.4
-
28
-
-
84898607484
-
Building a phylogenomic pipeline for the eukaryotic tree of life-addressing deep phylogenies with genome-scale data
-
Grant, J. R. & Katz, L. A. Building a phylogenomic pipeline for the eukaryotic tree of life-addressing deep phylogenies with genome-scale data. PLoS Curr. 6 (2014).
-
(2014)
PLoS Curr.
, vol.6
-
-
Grant, J.R.1
Katz, L.A.2
-
29
-
-
84864002352
-
Nested in the Chlorellales or independent class? Phylogeny and classification of the Pedinophyceae (Viridiplantae) revealed by molecular phylogenetic analyses of complete nuclear and plastid-encoded rRNA operons
-
Marin, B. Nested in the Chlorellales or independent class? Phylogeny and classification of the Pedinophyceae (Viridiplantae) revealed by molecular phylogenetic analyses of complete nuclear and plastid-encoded rRNA operons. Protist 163, 778-805 (2012).
-
(2012)
Protist
, vol.163
, pp. 778-805
-
-
Marin, B.1
-
30
-
-
84869234158
-
Hornwort pyrenoids, carbon-concentrating structures, evolved and were lost at least five times during the last 100 million years
-
Villarreal, J. C. & Renner, S. S. Hornwort pyrenoids, carbon-concentrating structures, evolved and were lost at least five times during the last 100 million years. Proc. Natl Acad. Sci. USA 109, 18873-18878 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 18873-18878
-
-
Villarreal, J.C.1
Renner, S.S.2
-
31
-
-
33748157972
-
Unraveling the evolutionary history of the liverworts (Marchantiophyta): Multiple taxa, genomes and analyses
-
Forrest, L. L. et al. Unraveling the evolutionary history of the liverworts (Marchantiophyta): multiple taxa, genomes and analyses. Bryologist 109, 303-334 (2006).
-
(2006)
Bryologist
, vol.109
, pp. 303-334
-
-
Forrest, L.L.1
-
32
-
-
33644782643
-
The new higher level classification of eukaryotes with emphasis on the taxonomy of protists
-
Adl, S. M. et al. The new higher level classification of eukaryotes with emphasis on the taxonomy of protists. J. Eukaryot. Microbiol. 52, 399-451 (2005).
-
(2005)
J. Eukaryot. Microbiol.
, vol.52
, pp. 399-451
-
-
Adl, S.M.1
-
33
-
-
0035881839
-
The complete DNA sequence of the Ectocarpus siliculosus Virus EsV-1 genome
-
Delaroque, N. et al. The complete DNA sequence of the Ectocarpus siliculosus Virus EsV-1 genome. Virology 287, 112-132 (2001).
-
(2001)
Virology
, vol.287
, pp. 112-132
-
-
Delaroque, N.1
-
34
-
-
33645530563
-
Defining the major lineages of red algae (Rhodophyta)
-
Yoon, H. S., Muller, K. M., Sheath, R. G., Ott, F. D. & Bhattacharya, D. Defining the major lineages of red algae (Rhodophyta). J. Phycol. 42, 482-492 (2006).
-
(2006)
J. Phycol.
, vol.42
, pp. 482-492
-
-
Yoon, H.S.1
Muller, K.M.2
Sheath, R.G.3
Ott, F.D.4
Bhattacharya, D.5
-
35
-
-
13244259056
-
Diversity and evolutionary history of plastids and their hosts
-
Keeling, P. J. Diversity and evolutionary history of plastids and their hosts. Am. J. Bot 91, 1481-1493 (2004).
-
(2004)
Am. J. Bot
, vol.91
, pp. 1481-1493
-
-
Keeling, P.J.1
-
36
-
-
84863338313
-
Inferring the higher-order phylogeny of mosses (Bryophyta) and relatives using a large, multigene plastid data set
-
Chang, Y. & Graham, S. W. Inferring the higher-order phylogeny of mosses (Bryophyta) and relatives using a large, multigene plastid data set. Am. J. Bot 98, 839-849 (2011).
-
(2011)
Am. J. Bot
, vol.98
, pp. 839-849
-
-
Chang, Y.1
Graham, S.W.2
-
37
-
-
67349253003
-
Analysis of the phytochrome gene family in Ceratodon purpureus by gene targeting reveals the primary phytochrome responsible for photo-and polarotropism
-
Mittmann, F., Dienstbach, S., Weisert, A. & Forreiter, C. Analysis of the phytochrome gene family in Ceratodon purpureus by gene targeting reveals the primary phytochrome responsible for photo-and polarotropism. Planta 230, 27-37 (2009).
-
(2009)
Planta
, vol.230
, pp. 27-37
-
-
Mittmann, F.1
Dienstbach, S.2
Weisert, A.3
Forreiter, C.4
-
38
-
-
0034776389
-
Evolution of Lycopodiaceae (Lycopsida): Estimating divergence times from rbcL gene sequences by use of nonparametric rate smoothing
-
Wikström, N. Evolution of Lycopodiaceae (Lycopsida): estimating divergence times from rbcL gene sequences by use of nonparametric rate smoothing. Mol. Phylogenet. Evol. 19, 177-186 (2001).
-
(2001)
Mol. Phylogenet. Evol.
, vol.19
, pp. 177-186
-
-
Wikström, N.1
-
39
-
-
0032023889
-
Taxonomic sampling, phylogenetic accuracy, and investigator bias
-
Hillis, D. M. Taxonomic sampling, phylogenetic accuracy, and investigator bias. Syst. Biol. 47, 3-8 (1998).
-
(1998)
Syst. Biol.
, vol.47
, pp. 3-8
-
-
Hillis, D.M.1
-
40
-
-
70350218974
-
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
-
Bremer, B. et al. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Bot. J. Linn. Soc. 161, 105-121 (2009).
-
(2009)
Bot. J. Linn. Soc.
, vol.161
, pp. 105-121
-
-
Bremer, B.1
-
41
-
-
27144507187
-
Phylogenetic analysis of the phytochrome superfamily reveals distinct microbial subfamilies of photoreceptors
-
Karniol, B., Wagner, J. R., Walker, J. M. & Vierstra, R. D. Phylogenetic analysis of the phytochrome superfamily reveals distinct microbial subfamilies of photoreceptors. Biochem. J. 392, 103-116 (2005).
-
(2005)
Biochem. J.
, vol.392
, pp. 103-116
-
-
Karniol, B.1
Wagner, J.R.2
Walker, J.M.3
Vierstra, R.D.4
-
42
-
-
0033819950
-
A new appraisal of the prokaryotic origin of eukaryotic phytochromes
-
Herdman, M., Coursin, T., Rippka, R., Houmard, J. & de Marsac, N. T. A new appraisal of the prokaryotic origin of eukaryotic phytochromes. J. Mol. Evol. 51, 205-213 (2000).
-
(2000)
J. Mol. Evol.
, vol.51
, pp. 205-213
-
-
Herdman, M.1
Coursin, T.2
Rippka, R.3
Houmard, J.4
De Marsac, N.T.5
-
43
-
-
0027022238
-
Molecular cloning of a novel phytochrome gene of the moss Ceratodon purpureus which encodes a putative light-regulated protein kinase
-
Thümmler, F., Dufner, M., Kreisl, P. & Dittrich, P. Molecular cloning of a novel phytochrome gene of the moss Ceratodon purpureus which encodes a putative light-regulated protein kinase. Plant Mol. Biol. 20, 1003-1017 (1992).
-
(1992)
Plant Mol. Biol.
, vol.20
, pp. 1003-1017
-
-
Thümmler, F.1
Dufner, M.2
Kreisl, P.3
Dittrich, P.4
-
44
-
-
33845202678
-
A single chromoprotein with triple chromophores acts as both a phytochrome and a phototropin
-
Kanegae, T., Hayashida, E., Kuramoto, C. & Wada, M. A single chromoprotein with triple chromophores acts as both a phytochrome and a phototropin. Proc. Natl Acad. Sci. USA 103, 17997-18001 (2006).
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 17997-18001
-
-
Kanegae, T.1
Hayashida, E.2
Kuramoto, C.3
Wada, M.4
-
45
-
-
0037448591
-
Responses of ferns to red light are mediated by an unconventional photoreceptor
-
Kawai, H. et al. Responses of ferns to red light are mediated by an unconventional photoreceptor. Nature 421, 287-290 (2003).
-
(2003)
Nature
, vol.421
, pp. 287-290
-
-
Kawai, H.1
-
46
-
-
1842431898
-
Ferns diversified in the shadow of angiosperms
-
Schneider, H. et al. Ferns diversified in the shadow of angiosperms. Nature 428, 553-557 (2004).
-
(2004)
Nature
, vol.428
, pp. 553-557
-
-
Schneider, H.1
-
47
-
-
67650488926
-
Evidence for a Cenozoic radiation of ferns in an angiosperm-dominated canopy
-
Schuettpelz, E. & Pryer, K. M. Evidence for a Cenozoic radiation of ferns in an angiosperm-dominated canopy. Proc. Natl Acad. Sci. USA 106, 11200-11205 (2009).
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 11200-11205
-
-
Schuettpelz, E.1
Pryer, K.M.2
-
48
-
-
84989696243
-
Photobiological characterization of a spore germination mutant dkgl with reversed photoregulation in the fern Ceratopteris richardii
-
Cooke, T. J., Hickok, L. G., Van der Woude, W. J., Banks, J. A. & Scott, R. J. Photobiological characterization of a spore germination mutant dkgl with reversed photoregulation in the fern Ceratopteris richardii. Photochem. Photobiol. 57, 1032-1041 (1993).
-
(1993)
Photochem. Photobiol.
, vol.57
, pp. 1032-1041
-
-
Cooke, T.J.1
Hickok, L.G.2
Van Der Woude, W.J.3
Banks, J.A.4
Scott, R.J.5
-
49
-
-
84874533862
-
An evolutionarily conserved signaling mechanism mediates far-red light responses in land plants
-
Possart, A. & Hiltbrunner, A. An evolutionarily conserved signaling mechanism mediates far-red light responses in land plants. Plant Cell 25, 102-114 (2013).
-
(2013)
Plant Cell
, vol.25
, pp. 102-114
-
-
Possart, A.1
Hiltbrunner, A.2
-
50
-
-
33749870468
-
Phytochrome-mediated development in land plants: Red light sensing evolves to meet the challenges of changing light environments
-
Mathews, S. Phytochrome-mediated development in land plants: red light sensing evolves to meet the challenges of changing light environments. Mol. Ecol. 15, 3483-3503 (2006).
-
(2006)
Mol. Ecol.
, vol.15
, pp. 3483-3503
-
-
Mathews, S.1
-
51
-
-
84863651272
-
Tests of the link between functional innovation and positive selection at phytochrome A: The phylogenetic distribution of far-red high-irradiance responses in seedling development
-
Mathews, S. & Tremonte, D. Tests of the link between functional innovation and positive selection at phytochrome A: the phylogenetic distribution of far-red high-irradiance responses in seedling development. Int. J. Plant Sci. 173, 662-672 (2012).
-
(2012)
Int. J. Plant Sci.
, vol.173
, pp. 662-672
-
-
Mathews, S.1
Tremonte, D.2
-
52
-
-
0028843153
-
Phytochrome A, phytochrome B and Hy4 are involved in hypocotyl growth responses to natural radiation in Arabidopsis: Weak de-etiolation of the phyA mutant under dense canopies
-
Yanovsky, M. J., Casal, J. J. & Whitelam, G. C. Phytochrome A, phytochrome B and Hy4 are involved in hypocotyl growth responses to natural radiation in Arabidopsis: weak de-etiolation of the phyA mutant under dense canopies. Plant Cell Environ. 18, 788-794 (1995).
-
(1995)
Plant Cell Environ.
, vol.18
, pp. 788-794
-
-
Yanovsky, M.J.1
Casal, J.J.2
Whitelam, G.C.3
-
53
-
-
84887593832
-
Fern Adiantum capillus-veneris phytochrome 1 comprises two native photochemical types similar to seed plant phytochrome A
-
Sineshchekov, V., Koppel, L., Okamoto, H. & Wada, M. Fern Adiantum capillus-veneris phytochrome 1 comprises two native photochemical types similar to seed plant phytochrome A. J. Photochem. Photobiol. B 130C, 20-29 (2013).
-
(2013)
J. Photochem. Photobiol. B
, vol.130 C
, pp. 20-29
-
-
Sineshchekov, V.1
Koppel, L.2
Okamoto, H.3
Wada, M.4
-
54
-
-
84890871365
-
Shedding (far-red) light on phytochrome mechanisms and responses in land plants
-
Possart, A., Fleck, C. & Hiltbrunner, A. Shedding (far-red) light on phytochrome mechanisms and responses in land plants. Plant Sci. 217-218, 36-46 (2014).
-
(2014)
Plant Sci.
, vol.217-218
, pp. 36-46
-
-
Possart, A.1
Fleck, C.2
Hiltbrunner, A.3
-
55
-
-
84856585935
-
Phytozome: A comparative platform for green plant genomics
-
Goodstein, D. M. et al. Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res. 40, D1178-D1186 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D1178-D1186
-
-
Goodstein, D.M.1
-
56
-
-
78651285748
-
CDD: A Conserved Domain Database for the functional annotation of proteins
-
Marchler-Bauer, A. et al. CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res. 39, D225-D229 (2011).
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D225-D229
-
-
Marchler-Bauer, A.1
-
57
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar, R. C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797 (2004).
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
58
-
-
79954529507
-
ProtTest 3: Fast selection of best-fit models of protein evolution
-
Darriba, D., Taboada, G. L., Doallo, R. & Posada, D. ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics 27, 1164-1165 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 1164-1165
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
60
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis, A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688-2690 (2006).
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
61
-
-
84861380450
-
Partitionfinder: Combined selection of partitioning schemes and substitution models for phylogenetic analyses
-
Lanfear, R., Calcott, B., Ho, S. Y. W. & Guindon, S. Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Mol. Biol. Evol. 29, 1695-1701 (2012).
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 1695-1701
-
-
Lanfear, R.1
Calcott, B.2
Ho, S.Y.W.3
Guindon, S.4
-
62
-
-
84860109324
-
MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space
-
Ronquist, F. et al. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst. Biol. 61, 539-542 (2012).
-
(2012)
Syst. Biol.
, vol.61
, pp. 539-542
-
-
Ronquist, F.1
-
64
-
-
84877790509
-
CodonPhyML: Fast maximum likelihood phylogeny estimation under codon substitution models
-
Gil, M., Zanetti, M. S., Zoller, S. & Anisimova, M. CodonPhyML: fast maximum likelihood phylogeny estimation under codon substitution models. Mol. Biol. Evol. 30, 1270-1280 (2013).
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 1270-1280
-
-
Gil, M.1
Zanetti, M.S.2
Zoller, S.3
Anisimova, M.4
-
65
-
-
84925176440
-
Automation and evaluation of the SOWH test of phylogenetic topologies with SOWHAT
-
Church, S. H., Ryan, J. F. & Dunn, C. W. Automation and evaluation of the SOWH test of phylogenetic topologies with SOWHAT. bioRxiv: doi:10.1101/005264 (2014).
-
(2014)
BioRxiv
-
-
Church, S.H.1
Ryan, J.F.2
Dunn, C.W.3
-
66
-
-
84878973869
-
Capturing protein-coding genes across highly divergent species
-
Li, C., Hofreiter, M., Straube, N., Corrigan, S. & Naylor, G. J. P. Capturing protein-coding genes across highly divergent species. BioTechniques 54, 321-326 (2013).
-
(2013)
BioTechniques
, vol.54
, pp. 321-326
-
-
Li, C.1
Hofreiter, M.2
Straube, N.3
Corrigan, S.4
Naylor, G.J.P.5
-
69
-
-
84942887758
-
SOAPdenovo2: An empirically improved memory-efficient shortread de novo assembler
-
Luo, R. et al. SOAPdenovo2: an empirically improved memory-efficient shortread de novo assembler. GigaScience 1, 18 (2012).
-
(2012)
GigaScience
, vol.1
, pp. 18
-
-
Luo, R.1
-
70
-
-
74049108922
-
BLAST+: Architecture and applications
-
Camacho, C. et al. BLAST+: architecture and applications. BMC Bioinformatics 10, 421 (2009).
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 421
-
-
Camacho, C.1
|