메뉴 건너뛰기




Volumn 42, Issue 2, 2006, Pages 482-492

Defining the major lineages of red algae (Rhodophyta)

Author keywords

Bangiophyceae; Compsopogonophyceae; Cyanidiophyceae; Florideophyceae; Porphyridiophycae; Red algal lineages; Rhodellophyceae; Rhodophyta; Stylonematophyceae

Indexed keywords

NEW TAXON; PHYLOGENY; RED ALGA; TAXONOMY;

EID: 33645530563     PISSN: 00223646     EISSN: 15298817     Source Type: Journal    
DOI: 10.1111/j.1529-8817.2006.00210.x     Document Type: Article
Times cited : (234)

References (52)
  • 2
    • 19044379861 scopus 로고    scopus 로고
    • Comparative genomics of two closely related unicellular thermo-acidophilic red algae, Galdieria sulphuraria and Cyanidioschyzon merolae, reveals the molecular basis of the metabolic flexibility of Galdieria sulphuraria and significant differences in carbohydrate metabolism of both algae
    • Barbier G. Oesterholt C. Larson M. D. Halgren R. G. Wilkerson C. Garavito R. M. Benning C. Weber A. P. M. 2005. Comparative genomics of two closely related unicellular thermo-acidophilic red algae, Galdieria sulphuraria and Cyanidioschyzon merolae, reveals the molecular basis of the metabolic flexibility of Galdieria sulphuraria and significant differences in carbohydrate metabolism of both algae. Plant Physiol. 137 440 74.
    • (2005) Plant Physiol. , vol.137 , pp. 440-74
    • Barbier, G.1    Oesterholt, C.2    Larson, M.D.3    Halgren, R.G.4    Wilkerson, C.5    Garavito, R.M.6    Benning, C.7    Weber, A.P.M.8
  • 3
    • 0001674430 scopus 로고
    • The phylogeny of plastids a review based on comparisons of small-subunit ribosomal RNA coding regions
    • Bhattacharya D. Medlin L. 1995. The phylogeny of plastids a review based on comparisons of small-subunit ribosomal RNA coding regions. J. Phycol. 31 489 98.
    • (1995) J. Phycol. , vol.31 , pp. 489-98
    • Bhattacharya, D.1    Medlin, L.2
  • 4
    • 0347635417 scopus 로고    scopus 로고
    • Photosynthetic eukaryotes unite endosymbiosis connects the dots
    • Bhattacharya D. Yoon H. S. Hackett J. D. 2004. Photosynthetic eukaryotes unite endosymbiosis connects the dots. BioEssays 26 50 60.
    • (2004) BioEssays , vol.26 , pp. 50-60
    • Bhattacharya, D.1    Yoon, H.S.2    Hackett, J.D.3
  • 5
    • 0033197505 scopus 로고    scopus 로고
    • Complete sequence of the mitochondrial DNA of the red alga Porphyra purpurea. Cyanobacterial introns and shared ancestry of red and green algae
    • Burger G. Saint-Louis D. Gray M. W. Lang B. F. 1999. Complete sequence of the mitochondrial DNA of the red alga Porphyra purpurea. Cyanobacterial introns and shared ancestry of red and green algae. Plant Cell 11 1675 94.
    • (1999) Plant Cell , vol.11 , pp. 1675-94
    • Burger, G.1    Saint-Louis, D.2    Gray, M.W.3    Lang, B.F.4
  • 6
    • 0033784751 scopus 로고    scopus 로고
    • Bangiomorpha pubescens n. gen., n. sp. implications for the evolution of sex, multicellularity, and the Mesoproterozoic/Neoproterozoic radiation of eukaryotes
    • Butterfield N. J. 2000. Bangiomorpha pubescens n. gen., n. sp. implications for the evolution of sex, multicellularity, and the Mesoproterozoic/Neoproterozoic radiation of eukaryotes. Paleobiology 26 386 404.
    • (2000) Paleobiology , vol.26 , pp. 386-404
    • Butterfield, N.J.1
  • 7
    • 0031663016 scopus 로고    scopus 로고
    • A revised six-kingdom system of life
    • Cavalier-Smith T. 1998. A revised six-kingdom system of life. Biol. Rev. 73 203 66.
    • (1998) Biol. Rev. , vol.73 , pp. 203-66
    • Cavalier-Smith, T.1
  • 8
    • 0029897169 scopus 로고    scopus 로고
    • Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids
    • Delwiche C. F. Palmer J. D. 1996. Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids. Mol. Biol. Evol. 13 873 82.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 873-82
    • Delwiche, C.F.1    Palmer, J.D.2
  • 9
    • 0029317470 scopus 로고
    • Phylogenetic analysis of tufA sequences indicates a cyanobacterial origin of all plastids
    • Delwiche C. F. Kuhsel M. Palmer J. D. 1995. Phylogenetic analysis of tufA sequences indicates a cyanobacterial origin of all plastids. Mol. Phylogenet. Evol. 4 110 28.
    • (1995) Mol. Phylogenet. Evol. , vol.4 , pp. 110-28
    • Delwiche, C.F.1    Kuhsel, M.2    Palmer, J.D.3
  • 10
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies an approach using the bootstrap
    • Felsenstein J. 1985. Confidence limits on phylogenies an approach using the bootstrap. Evolution 39 783 91.
    • (1985) Evolution , vol.39 , pp. 783-91
    • Felsenstein, J.1
  • 13
    • 0022401376 scopus 로고
    • The nature of the ancestral red alga inferences from a cladistic analysis
    • Gabrielson P. W. Garbary D. J. Scagel R. F. 1985. The nature of the ancestral red alga inferences from a cladistic analysis. Biosystems 18 335 46.
    • (1985) Biosystems , vol.18 , pp. 335-46
    • Gabrielson, P.W.1    Garbary, D.J.2    Scagel, R.F.3
  • 15
    • 0004182073 scopus 로고
    • Taxonomy and evolution
    • In*Cole K. M.*Sheath R. G. [Eds]. Cambridge University Press New York pp.
    • Garbary D. J. Gabrielson P. W. 1990. Taxonomy and evolution. In Cole K. M. Sheath R. G. [Eds] Biology of the Red Algae. Cambridge University Press New York pp. 477 98.
    • (1990) Biology of the Red Algae. , pp. 477-98
    • Garbary, D.J.1    Gabrielson, P.W.2
  • 18
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S. Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 696 704.
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 19
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES Bayesian inference of phylogenetic trees
    • Huelsenbeck J. P. Ronquist F. 2001. MRBAYES Bayesian inference of phylogenetic trees. Bioinformatics 17 754 5.
    • (2001) Bioinformatics , vol.17 , pp. 754-5
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 20
    • 4644327551 scopus 로고    scopus 로고
    • Phylogenetic artifacts can be caused by leucine, serine, and arginine codon usage heterogeneity dinoflagellate plastid origins as a case study
    • Inagaki Y. Simpson A. Dacks J. Roger A. 2004. Phylogenetic artifacts can be caused by leucine, serine, and arginine codon usage heterogeneity dinoflagellate plastid origins as a case study. Syst. Biol. 53 582 93.
    • (2004) Syst. Biol. , vol.53 , pp. 582-93
    • Inagaki, Y.1    Simpson, A.2    Dacks, J.3    Roger, A.4
  • 21
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones D. T. Taylor W. R. Thornton J. M. 1992. The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8 275 82.
    • (1992) Comput. Appl. Biosci. , vol.8 , pp. 275-82
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 23
    • 0000107535 scopus 로고
    • Sahlingia n. ov. gen. based on Erythrocladia subintegra (Erythropeltidales, Rhodophyta)
    • Kornmann P. 1989. Sahlingia n. ov. gen. based on Erythrocladia subintegra (Erythropeltidales, Rhodophyta). Br. Phycol. J. 24 223 8.
    • (1989) Br. Phycol. J. , vol.24 , pp. 223-8
    • Kornmann, P.1
  • 24
    • 0033167259 scopus 로고    scopus 로고
    • Plastids and protein targeting
    • McFadden G. I. 1999. Plastids and protein targeting. J. Eukar. Microbiol. 46 339 46.
    • (1999) J. Eukar. Microbiol. , vol.46 , pp. 339-46
    • McFadden, G.I.1
  • 25
    • 0034604170 scopus 로고    scopus 로고
    • The origin of red algae and the evolution of chloroplasts
    • Moreira D. Le Guyader H. Phillippe H. 2000. The origin of red algae and the evolution of chloroplasts. Nature 405 69 72.
    • (2000) Nature , vol.405 , pp. 69-72
    • Moreira, D.1    Le Guyader, H.2    Phillippe, H.3
  • 26
    • 0037803618 scopus 로고    scopus 로고
    • Systematics of Bangia (Bangiales, Rhodophyta) in North America. II. Biogeographical trends in karyology chromosome numbers and linkage with gene sequence phylogenetic trees
    • Müller K. M. Cole K. M. Sheath R. G. 2003. Systematics of Bangia (Bangiales, Rhodophyta) in North America. II. Biogeographical trends in karyology chromosome numbers and linkage with gene sequence phylogenetic trees. Phycologia 42 209 19.
    • (2003) Phycologia , vol.42 , pp. 209-19
    • Müller, K.M.1    Cole, K.M.2    Sheath, R.G.3
  • 27
    • 0347039141 scopus 로고    scopus 로고
    • Ribosomal DNA phylogeny of the Bangiophycidae (Rhodophyta) and the origin of secondary plastids
    • Müller K. M. Oliveira M. C. Sheath R. G. Bhattacharya D. 2001. Ribosomal DNA phylogeny of the Bangiophycidae (Rhodophyta) and the origin of secondary plastids. Am. J. Bot. 88 1390 400.
    • (2001) Am. J. Bot. , vol.88 , pp. 1390-400
    • Müller, K.M.1    Oliveira, M.C.2    Sheath, R.G.3    Bhattacharya, D.4
  • 28
    • 0038817934 scopus 로고    scopus 로고
    • Pyrophyllon and Chlidophyllon (Erythropeltidales, Rhodophyta) two new genera for obligate epiphytic species previously placed in Porphyra, and a discussion of the orders Erythropeltidales and Bangiales
    • Nelson W. A. Broom J. E. Farr T. J. 2003. Pyrophyllon and Chlidophyllon (Erythropeltidales, Rhodophyta) two new genera for obligate epiphytic species previously placed in Porphyra, and a discussion of the orders Erythropeltidales and Bangiales. Phycologia 42 308 14.
    • (2003) Phycologia , vol.42 , pp. 308-14
    • Nelson, W.A.1    Broom, J.E.2    Farr, T.J.3
  • 29
    • 3042625932 scopus 로고    scopus 로고
    • A horizontally acquired group II intron in the chloroplast psbA gene of a psychrophilic Chlamydomonas in vitro self-splicing and genetic evidence for maturase activity
    • Odom O. W. Shenkenberg D. L. Garcia J. A. Herrin D. L. 2004. A horizontally acquired group II intron in the chloroplast psbA gene of a psychrophilic Chlamydomonas in vitro self-splicing and genetic evidence for maturase activity. RNA 10 1097 107.
    • (2004) RNA , vol.10 , pp. 1097-107
    • Odom, O.W.1    Shenkenberg, D.L.2    Garcia, J.A.3    Herrin, D.L.4
  • 30
    • 0033760849 scopus 로고    scopus 로고
    • Phylogeny of the Bangiophycidae (Rhodophyta) and the secondary endosymbiotic origin of algal plastids
    • Oliveira M. C. Bhattacharya D. 2000. Phylogeny of the Bangiophycidae (Rhodophyta) and the secondary endosymbiotic origin of algal plastids. Am. J. Bot. 87 482 92.
    • (2000) Am. J. Bot. , vol.87 , pp. 482-92
    • Oliveira, M.C.1    Bhattacharya, D.2
  • 31
    • 1642488239 scopus 로고    scopus 로고
    • A multiprotein complex involved in chloroplast group II intron splicing
    • Perron K. Goldschmidt-Clermont M. Rochaix J. D. 2004. A multiprotein complex involved in chloroplast group II intron splicing. RNA 10 704 11.
    • (2004) RNA , vol.10 , pp. 704-11
    • Perron, K.1    Goldschmidt-Clermont, M.2    Rochaix, J.D.3
  • 33
    • 0028364254 scopus 로고
    • A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene
    • Ragan M. A. Bird C. J. Rice E. L. Gutell R. R. Murphy C. A. Singh R. K. 1994. A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene. Proc. Natl. Acad. Sci. USA 91 7276 80.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 7276-80
    • Ragan, M.A.1    Bird, C.J.2    Rice, E.L.3    Gutell, R.R.4    Murphy, C.A.5    Singh, R.K.6
  • 34
    • 0033384726 scopus 로고    scopus 로고
    • Systematics and biogeography of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families in North America
    • Rintoul T. L. Sheath R. G. Vis M. L. 1999. Systematics and biogeography of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families in North America. Phycologia 38 517 27.
    • (1999) Phycologia , vol.38 , pp. 517-27
    • Rintoul, T.L.1    Sheath, R.G.2    Vis, M.L.3
  • 36
    • 0034069504 scopus 로고    scopus 로고
    • Error, bias, and long-branch attraction in data for two chloroplast photosystem genes in seed plants
    • Sanderson M. J. Wojciechowski M. F. Hu J. M. Khan T. S. Brady S. G. 2000. Error, bias, and long-branch attraction in data for two chloroplast photosystem genes in seed plants. Mol. Biol. Evol. 17 782 97.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 782-97
    • Sanderson, M.J.1    Wojciechowski, M.F.2    Hu, J.M.3    Khan, T.S.4    Brady, S.G.5
  • 37
    • 25144518468 scopus 로고    scopus 로고
    • Assessing red algal supraordinal diversity and taxonomy in the context of contemporary systematic data
    • Saunders G. W. Hommersand M. H. 2004. Assessing red algal supraordinal diversity and taxonomy in the context of contemporary systematic data. Am. J. Bot. 91 1494 507.
    • (2004) Am. J. Bot. , vol.91 , pp. 1494-507
    • Saunders, G.W.1    Hommersand, M.H.2
  • 38
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt H. A. Strimmer K. Vingron M. von Haeseler A. 2002. TREE-PUZZLE maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18 502 4.
    • (2002) Bioinformatics , vol.18 , pp. 502-4
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    Von Haeseler, A.4
  • 39
    • 84989625482 scopus 로고
    • Ultrastucture of vegetative organization and cell division in the unicellular red alga Dixoniella grisea gen. nov. (Rhodophyta) and a consideration of the genus Rhodella
    • Scott J. L. Broadwater S. T. Saunders B. D. Thomas J. P. Gabrielson P. W. 1992. Ultrastucture of vegetative organization and cell division in the unicellular red alga Dixoniella grisea gen. nov. (Rhodophyta) and a consideration of the genus Rhodella. J. Phycol. 28 649 60.
    • (1992) J. Phycol. , vol.28 , pp. 649-60
    • Scott, J.L.1    Broadwater, S.T.2    Saunders, B.D.3    Thomas, J.P.4    Gabrielson, P.W.5
  • 40
    • 28944450584 scopus 로고    scopus 로고
    • Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences
    • Shapiro B. Rambaut A. Drummond A. J. 2005. Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences. Mol. Biol. Evol. 23 7 9.
    • (2005) Mol. Biol. Evol. , vol.23 , pp. 7-9
    • Shapiro, B.1    Rambaut, A.2    Drummond, A.J.3
  • 41
    • 1342263796 scopus 로고    scopus 로고
    • Recent horizontal intron transfer to a chloroplast genome
    • Sheveleva E. V. Hallick R. B. 2004. Recent horizontal intron transfer to a chloroplast genome. Nucleic Acids Res. 32 803 10.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 803-10
    • Sheveleva, E.V.1    Hallick, R.B.2
  • 43
    • 0025507539 scopus 로고
    • Rubisco genes indicate a close phylogenetic relation between the plastids of Chromophyta and Rhodophyta
    • Valentin K. Zetsche K. 1990. Rubisco genes indicate a close phylogenetic relation between the plastids of Chromophyta and Rhodophyta. Plant Mol. Biol. 15 575 84.
    • (1990) Plant Mol. Biol. , vol.15 , pp. 575-84
    • Valentin, K.1    Zetsche, K.2
  • 44
    • 0031436828 scopus 로고    scopus 로고
    • Evolutionary relationships among the eukaryotic crown taxa taking into account site-to-site rate variation in 18S rRNA
    • Van de Peer Y. De Wachter R. 1997. Evolutionary relationships among the eukaryotic crown taxa taking into account site-to-site rate variation in 18S rRNA. J. Mol. Evol. 45 619 30.
    • (1997) J. Mol. Evol. , vol.45 , pp. 619-30
    • Van De Peer, Y.1    De Wachter, R.2
  • 45
    • 18144424841 scopus 로고    scopus 로고
    • Observations on Purpureofilum apyrenoidigerum gen. et sp. nov. from Australia and Bangiopsis subsimplex from India (Stylonematales, Bangiophyceae, Rhodophyta)
    • West J. A. Zuccarello G. C. Scott J. Pickett-Heaps J. Kim G. H. 2005. Observations on Purpureofilum apyrenoidigerum gen. et sp. nov. from Australia and Bangiopsis subsimplex from India (Stylonematales, Bangiophyceae, Rhodophyta). Phycol. Res. 53 49 66.
    • (2005) Phycol. Res. , vol.53 , pp. 49-66
    • West, J.A.1    Zuccarello, G.C.2    Scott, J.3    Pickett-Heaps, J.4    Kim, G.H.5
  • 46
    • 1342287541 scopus 로고    scopus 로고
    • Phosphatized multicellular algae in the Neoproterozoic Doushantuo Formation, China, and the early evolution of florideophyte red algae
    • Xiao S. Knoll A. H. Yuan X. Pueschel C. M. 2004. Phosphatized multicellular algae in the Neoproterozoic Doushantuo Formation, China, and the early evolution of florideophyte red algae. Am. J. Bot. 91 214 27.
    • (2004) Am. J. Bot. , vol.91 , pp. 214-27
    • Xiao, S.1    Knoll, A.H.2    Yuan, X.3    Pueschel, C.M.4
  • 47
    • 0032484945 scopus 로고    scopus 로고
    • Three-dimensional preservation of algae and animal embryos in a Neoproterozoic phosphorite
    • Xiao S. Zhang Y. Knoll A. H. 1998. Three-dimensional preservation of algae and animal embryos in a Neoproterozoic phosphorite. Nature 391 553 8.
    • (1998) Nature , vol.391 , pp. 553-8
    • Xiao, S.1    Zhang, Y.2    Knoll, A.H.3
  • 48
    • 0037015024 scopus 로고    scopus 로고
    • A single origin of the peridinin - And fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis
    • Yoon H. S. Hackett J. D. Bhattacharya D. 2002a. A single origin of the peridinin - and fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis. Proc. Natl. Acad. Sci. USA 99 11724 9.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 11724-9
    • Yoon, H.S.1    Hackett, J.D.2    Bhattacharya, D.3
  • 52
    • 0034052669 scopus 로고    scopus 로고
    • Molecular phylogeny of Rhodochaete parvula (Bangiophycidae, Rhodophyta)
    • Zuccarello G. West J. Bitans A. Kraft G. 2000. Molecular phylogeny of Rhodochaete parvula (Bangiophycidae, Rhodophyta). Phycologia 39 75 81.
    • (2000) Phycologia , vol.39 , pp. 75-81
    • Zuccarello, G.1    West, J.2    Bitans, A.3    Kraft, G.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.