Interactions of release factor RF3 with the translation machinery

Molecular Genetics and Genomics

Volumn 290, Issue 4, 2015, Pages 1335-1344

  O’Connor, Michael ^a  

^a UNIVERSITY OF MISSOURI KANSAS CITY   (United States)

Author keywords

Release factor RF2; Release factor RF3; RluD; Termination

Indexed keywords

BACTERIAL PROTEIN; CEFSULODIN; CHLORAMPHENICOL; RELEASE FACTOR RF 3 PROTEIN; STREPTOMYCIN; UNCLASSIFIED DRUG; AMINOACYL TRANSFER RNA; ANTIINFECTIVE AGENT; ESCHERICHIA COLI PROTEIN; PRFA PROTEIN, E COLI; PRFB PROTEIN, E COLI; PRFC PROTEIN, E COLI; PROTEIN BINDING; TRANSLATION TERMINATION FACTOR; TRNA, PEPTIDYL-;

ALLELE; ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL MUTATION; BACTERIAL STRAIN; CONTROLLED STUDY; DELETION MUTANT; DISSOCIATION; ESCHERICHIA COLI; IN VIVO STUDY; MINIMUM INHIBITORY CONCENTRATION; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; PROTEIN DEPLETION; PROTEIN EXPRESSION; PROTEIN INTERACTION; PROTEIN SECRETION; SALMONELLA ENTERICA; STOP CODON; TRANSLATION REGULATION; DRUG EFFECTS; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MICROBIAL VIABILITY; MUTATION; PROTEIN SYNTHESIS; RIBOSOME; RNA TRANSLATION;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

ANTI-BACTERIAL AGENTS; BACTERIAL PROTEINS; CEFSULODIN; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; MICROBIAL VIABILITY; MUTATION; PEPTIDE CHAIN TERMINATION, TRANSLATIONAL; PEPTIDE TERMINATION FACTORS; PHENOTYPE; PROTEIN BINDING; PROTEIN BIOSYNTHESIS; RIBOSOMES; RNA, TRANSFER, AMINO ACYL; SALMONELLA ENTERICA;

EID: 84937976551     PISSN: 16174615     EISSN: 16174623     Source Type: Journal    
DOI: 10.1007/s00438-015-0994-x     Document Type: Article

References (30)

1. Agarwal D, Gregory ST, O’Connor M (2011) Error-prone and error-restrictive mutations affecting ribosomal protein S12. J Mol Biol 410:1–9
2. Andersson DI, Andersson SG, Kurland CG (1986) Functional interactions between mutated forms of ribosomal proteins S4, S5 and S12. Biochimie 68:705–713
3. Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2(2006):0008
4. Bjare U, Gorini L (1971) Drug dependence reversed by a ribosomal ambiguity mutation, ram, in Escherichia coli. J Mol Biol 57:423–435
5. Bjorkman J, Samuelsson P, Andersson DI, Hughes D (1999) Novel ribosomal mutations affecting translational accuracy, antibiotic resistance and virulence of Salmonella typhimurium. Mol Microbiol 31:53–58
6. Capecchi MR, Klein HA (1969) Characterization of three proteins involved in polypeptide chain termination. Cold Spring Harb Symp Quant Biol 34:469–477
7. Caskey T, Scolnick E, Tompkins R, Goldstein J, Milman G (1969) Peptide chain termination, codon, protein factor, and ribosomal requirements. Cold Spring Harb Symp Quant Biol 34:479–488
8. Dahlgren A, Ryden-Aulin M (2000) A novel mutation in ribosomal protein S4 that affects the function of a mutated RF1. Biochimie 82:683–691
9. Datsenko KA, Wanner BL (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 97:6640–6645
10. Dincbas V, Heurgue-Hamard V, Buckingham RH, Karimi R, Ehrenberg M (1999) Shutdown in protein synthesis due to the expression of mini-genes in bacteria. J Mol Biol 291:745–759
11. Dincbas-Renqvist V, Engstrom A, Mora L, Heurgue-Hamard V, Buckingham R, Ehrenberg M (2000) A post-translational modification in the GGQ motif of RF2 from Escherichia coli stimulates termination of translation. EMBO J 19:6900–6907
12. Freistroffer DV, Pavlov MY, MacDougall J, Buckingham RH, Ehrenberg M (1997) Release factor RF3 in E.coli accelerates the dissociation of release factors RF1 and RF2 from the ribosome in a GTP-dependent manner. EMBO J 16:4126–4133
13. Gong M, Cruz-Vera LR, Yanofsky C (2007) Ribosome recycling factor and release factor 3 action promotes TnaC-peptidyl-tRNA Dropoff and relieves ribosome stalling during tryptophan induction of tna operon expression in Escherichia coli. J Bacteriol 189:3147–3155
14. Grentzmann G, Brechemier-Baey D, Heurgue V, Mora L, Buckingham RH (1994) Localization and characterization of the gene encoding release factor RF3 in Escherichia coli. Proc Natl Acad Sci USA 91:5848–5852
15. Grentzmann G, Brechemier-Baey D, Heurgue-Hamard V, Buckingham RH (1995) Function of polypeptide chain release factor RF-3 in Escherichia coli. RF-3 action in termination is predominantly at UGA-containing stop signals. J Biol Chem 270:10595–10600
16. Kipper K, Sild S, Hetenyi C, Remme J, Liiv A (2011) Pseudouridylation of 23S rRNA helix 69 promotes peptide release by release factor RF2 but not by release factor RF1. Biochimie 93:834–844
17. Kisselev LL, Buckingham RH (2000) Translational termination comes of age. Trends Biochem Sci 25:561–566
18. Margus T, Remm M, Tenson T (2007) Phylogenetic distribution of translational GTPases in bacteria. BMC Genom 8:15
19. Mikuni O, Ito K, Moffat J, Matsumura K, McCaughan K, Nobukuni T, Tate W, Nakamura Y (1994) Identification of the prfC gene, which encodes peptide-chain-release factor 3 of Escherichia coli. Proc Natl Acad Sci USA 91:5798–5802
20. Miller J (1972) Experiments in molecular genetics. Cold Spring Harbor Laboratory Press, New York
21. Miller JH (1991) A short course in bacterial genetics. Cold Spring Harbor Laboratory Press, New York
22. Mora L, Heurgue-Hamard V, de Zamaroczy M, Kervestin S, Buckingham RH (2007) Methylation of bacterial release factors RF1 and RF2 is required for normal translation termination in vivo. J Biol Chem 282:35638–35645
23. Nichols RJ, Sen S, Choo YJ, Beltrao P, Zietek M, Chaba R, Lee S, Kazmierczak KM, Lee KJ, Wong A, Shales M, Lovett S, Winkler ME, Krogan NJ, Typas A, Gross CA (2011) Phenotypic landscape of a bacterial cell. Cell 144:143–156
24. O’Connor M, Gregory ST (2011) Inactivation of the RluD pseudouridine synthase has minimal effects on growth and ribosome function in wild-type Escherichia coli and Salmonella enterica. J Bacteriol 193:154–162
25. O’Connor M, Thomas CL, Zimmermann RA, Dahlberg AE (1997) Decoding fidelity at the ribosomal A and P sites: influence of mutations in three different regions of the decoding domain in 16S rRNA. Nucleic Acids Res 25:1185–1193
26. Petropoulos AD, McDonald ME, Green R, Zaher HS (2014) Distinct roles for release factor 1 and release factor 2 in translational quality control. J Biol Chem 289:17589–17596
27. Schaub RE, Hayes CS (2011) Deletion of the RluD pseudouridine synthase promotes SsrA peptide tagging of ribosomal protein S7. Mol Microbiol 79:331–341
28. Vogel HJ, Bonner DM (1956) Acetylornithinase of Escherichia coli: partial purification and some properties. J Biol Chem 218:97–106
29. Zaher HS, Green R (2009) Quality control by the ribosome following peptide bond formation. Nature 457:161–166
30. Zaher HS, Green R (2011) A primary role for release factor 3 in quality control during translation elongation in Escherichia coli. Cell 147:396–408