메뉴 건너뛰기




Volumn 81, Issue , 2015, Pages 113-119

SRNA profiling in Aspergillus flavus reveals differentially expressed miRNA-like RNAs response to water activity and temperature

Author keywords

Aspergillus flavus; MicroRNA like RNAs; SRNA profiling; Temperature; Water activity

Indexed keywords

MICRORNA; MYCOTOXIN; RNA; SMALL UNTRANSLATED RNA; WATER;

EID: 84937945195     PISSN: 10871845     EISSN: 10960937     Source Type: Journal    
DOI: 10.1016/j.fgb.2015.03.004     Document Type: Article
Times cited : (51)

References (37)
  • 1
    • 79959657331 scopus 로고    scopus 로고
    • Control of aflatoxin production of Aspergillus flavus and Aspergillus parasiticus using RNA silencing technology by targeting aflD (nor-1) gene
    • Abdel-Hadi A.M., et al. Control of aflatoxin production of Aspergillus flavus and Aspergillus parasiticus using RNA silencing technology by targeting aflD (nor-1) gene. Toxins 2011, 3:647-659.
    • (2011) Toxins , vol.3 , pp. 647-659
    • Abdel-Hadi, A.M.1
  • 2
    • 17444430392 scopus 로고    scopus 로고
    • MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants
    • Allen E., et al. MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 2005, 121:207-221.
    • (2005) Cell , vol.121 , pp. 207-221
    • Allen, E.1
  • 4
    • 0000557164 scopus 로고
    • The effects of moisture and temperature on growth and spore germination in some fungi
    • Ayerst G. The effects of moisture and temperature on growth and spore germination in some fungi. J. Stored Prod. Res. 1969, 5:127-141.
    • (1969) J. Stored Prod. Res. , vol.5 , pp. 127-141
    • Ayerst, G.1
  • 5
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel D.P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116:281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 6
    • 84879504279 scopus 로고    scopus 로고
    • The RNAi machinery regulates growth and development in the filamentous fungus Trichoderma atroviride
    • Carreras-Villaseñor N., et al. The RNAi machinery regulates growth and development in the filamentous fungus Trichoderma atroviride. Mol. Microbiol. 2013, 89:96-112.
    • (2013) Mol. Microbiol. , vol.89 , pp. 96-112
    • Carreras-Villaseñor, N.1
  • 7
    • 84929057201 scopus 로고    scopus 로고
    • Exploring microRNA-like small RNAs in the filamentous fungus Fusarium oxysporum
    • Chen R., et al. Exploring microRNA-like small RNAs in the filamentous fungus Fusarium oxysporum. PLoS ONE 2014, 9:e104956.
    • (2014) PLoS ONE , vol.9 , pp. e104956
    • Chen, R.1
  • 8
    • 0842321501 scopus 로고    scopus 로고
    • MicroRNA targets in Drosophila
    • Enright A.J., et al. MicroRNA targets in Drosophila. Genome Biol. 2003, 5:R1.
    • (2003) Genome Biol. , vol.5 , pp. R1
    • Enright, A.J.1
  • 9
    • 55249115975 scopus 로고    scopus 로고
    • Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
    • Grimson A., et al. Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals. Nature 2008, 455:1193-1197.
    • (2008) Nature , vol.455 , pp. 1193-1197
    • Grimson, A.1
  • 10
    • 34250783965 scopus 로고    scopus 로고
    • Aspergillus flavus: human pathogen, allergen and mycotoxin producer
    • Hedayati M., et al. Aspergillus flavus: human pathogen, allergen and mycotoxin producer. Microbiology 2007, 153:1677-1692.
    • (2007) Microbiology , vol.153 , pp. 1677-1692
    • Hedayati, M.1
  • 11
    • 2942568227 scopus 로고    scopus 로고
    • A molecular timescale of eukaryote evolution and the rise of complex multicellular life
    • Hedges S.B., et al. A molecular timescale of eukaryote evolution and the rise of complex multicellular life. BMC Evol. Biol. 2004, 4:279-284.
    • (2004) BMC Evol. Biol. , vol.4 , pp. 279-284
    • Hedges, S.B.1
  • 12
    • 84869008360 scopus 로고    scopus 로고
    • A novel real-time PCR assay of microRNAs using S-Poly(T), a specific oligo(dT) reverse transcription primer with excellent sensitivity and specificity
    • Kang K., et al. A novel real-time PCR assay of microRNAs using S-Poly(T), a specific oligo(dT) reverse transcription primer with excellent sensitivity and specificity. PLoS ONE 2012, 7:e48536.
    • (2012) PLoS ONE , vol.7 , pp. e48536
    • Kang, K.1
  • 13
    • 84884855941 scopus 로고    scopus 로고
    • Identification of microRNA-Like RNAs in the filamentous fungus Trichoderma reesei by solexa sequencing
    • Kang K., et al. Identification of microRNA-Like RNAs in the filamentous fungus Trichoderma reesei by solexa sequencing. PLoS ONE 2013, 8:e76288.
    • (2013) PLoS ONE , vol.8 , pp. e76288
    • Kang, K.1
  • 14
    • 18344373363 scopus 로고    scopus 로고
    • Small RNAs: classification, biogenesis, and function
    • Kim V.N. Small RNAs: classification, biogenesis, and function. Mol. Cells 2005, 19:1-15.
    • (2005) Mol. Cells , vol.19 , pp. 1-15
    • Kim, V.N.1
  • 15
    • 35248865702 scopus 로고    scopus 로고
    • Aspergillus flavus: the major producer of aflatoxin
    • Klich M.A. Aspergillus flavus: the major producer of aflatoxin. Mol. Plant Pathol. 2007, 8:713-722.
    • (2007) Mol. Plant Pathol. , vol.8 , pp. 713-722
    • Klich, M.A.1
  • 16
    • 0035955374 scopus 로고    scopus 로고
    • Identification of novel genes coding for small expressed RNAs
    • Lagos-Quintana M., et al. Identification of novel genes coding for small expressed RNAs. Science 2001, 294:853-858.
    • (2001) Science , vol.294 , pp. 853-858
    • Lagos-Quintana, M.1
  • 17
    • 84883319233 scopus 로고    scopus 로고
    • Identification of microRNA-like RNAs in mycelial and yeast phases of the thermal dimorphic fungus Penicillium marneffei
    • Lau S.K., et al. Identification of microRNA-like RNAs in mycelial and yeast phases of the thermal dimorphic fungus Penicillium marneffei. PLoS Negl. Trop. Dis. 2013, 7:e2398.
    • (2013) PLoS Negl. Trop. Dis. , vol.7 , pp. e2398
    • Lau, S.K.1
  • 18
    • 0035955366 scopus 로고    scopus 로고
    • An extensive class of small RNAs in Caenorhabditis elegans
    • Lee R.C., Ambros V. An extensive class of small RNAs in Caenorhabditis elegans. Science 2001, 294:862-864.
    • (2001) Science , vol.294 , pp. 862-864
    • Lee, R.C.1    Ambros, V.2
  • 19
    • 77950929337 scopus 로고    scopus 로고
    • Diverse pathways generate microRNA-like RNAs and Dicer-independent small interfering RNAs in fungi
    • Lee H.C., et al. Diverse pathways generate microRNA-like RNAs and Dicer-independent small interfering RNAs in fungi. Mol. Cell 2010, 38:803-814.
    • (2010) Mol. Cell , vol.38 , pp. 803-814
    • Lee, H.C.1
  • 20
    • 40049104732 scopus 로고    scopus 로고
    • SOAP: short oligonucleotide alignment program
    • Li R., et al. SOAP: short oligonucleotide alignment program. Bioinformatics 2008, 24:713-714.
    • (2008) Bioinformatics , vol.24 , pp. 713-714
    • Li, R.1
  • 21
    • 64149117818 scopus 로고    scopus 로고
    • Identification of microRNA in the protist Trichomonas vaginalis
    • Lin W.-C., et al. Identification of microRNA in the protist Trichomonas vaginalis. Genomics 2009, 93:487-493.
    • (2009) Genomics , vol.93 , pp. 487-493
    • Lin, W.-C.1
  • 22
    • 33947244101 scopus 로고    scopus 로고
    • First report of Aspergillus flavus causing fruit rots of peaches in Greece
    • Michailides T., Thomidis T. First report of Aspergillus flavus causing fruit rots of peaches in Greece. Plant. Pathol. 2007, 56:352.
    • (2007) Plant. Pathol. , vol.56 , pp. 352
    • Michailides, T.1    Thomidis, T.2
  • 23
    • 84894123001 scopus 로고    scopus 로고
    • CoLIde: a bioinformatics tool for CO-expression-based small RNA loci identification using high-throughput sequencing data
    • Mohorianu I., et al. CoLIde: a bioinformatics tool for CO-expression-based small RNA loci identification using high-throughput sequencing data. RNA Biol. 2013, 10:1221-1230.
    • (2013) RNA Biol. , vol.10 , pp. 1221-1230
    • Mohorianu, I.1
  • 24
    • 4143065624 scopus 로고    scopus 로고
    • Gene silencing with RNA interference in the human pathogenic fungus Aspergillus fumigatus
    • Mouyna I., et al. Gene silencing with RNA interference in the human pathogenic fungus Aspergillus fumigatus. FEMS Microbiol. Lett. 2004, 237:317-324.
    • (2004) FEMS Microbiol. Lett. , vol.237 , pp. 317-324
    • Mouyna, I.1
  • 25
  • 26
    • 77956539978 scopus 로고    scopus 로고
    • Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides
    • Nicolas F.E., et al. Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides. Nucleic Acids Res. 2010, 38:5535-5541.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 5535-5541
    • Nicolas, F.E.1
  • 27
    • 79960061199 scopus 로고    scopus 로고
    • Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae
    • Nunes C., et al. Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae. BMC Genom. 2011, 12:288.
    • (2011) BMC Genom. , vol.12 , pp. 288
    • Nunes, C.1
  • 28
    • 57149094023 scopus 로고    scopus 로고
    • SnoRNA, a novel precursor of microRNA in Giardia lamblia
    • Saraiya A.A., Wang C.C. SnoRNA, a novel precursor of microRNA in Giardia lamblia. PLoS Path. 2008, 4:e1000224.
    • (2008) PLoS Path. , vol.4 , pp. e1000224
    • Saraiya, A.A.1    Wang, C.C.2
  • 29
    • 84902002754 scopus 로고    scopus 로고
    • Characterization of the biosynthetic gene cluster for the ribosomally synthesized cyclic peptide ustiloxin B in Aspergillus flavus
    • Umemura M., et al. Characterization of the biosynthetic gene cluster for the ribosomally synthesized cyclic peptide ustiloxin B in Aspergillus flavus. Fungal Genet. Biol. 2014, 68:23-30.
    • (2014) Fungal Genet. Biol. , vol.68 , pp. 23-30
    • Umemura, M.1
  • 30
    • 75249095274 scopus 로고    scopus 로고
    • DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
    • Wang L., et al. DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinformatics 2010, 26:136-138.
    • (2010) Bioinformatics , vol.26 , pp. 136-138
    • Wang, L.1
  • 31
    • 32644433645 scopus 로고    scopus 로고
    • Aspergillus flavus genomics: gateway to human and animal health, food safety, and crop resistance to diseases
    • Yu J., et al. Aspergillus flavus genomics: gateway to human and animal health, food safety, and crop resistance to diseases. Rev. Iberoam. Micol. 2005, 22:194-202.
    • (2005) Rev. Iberoam. Micol. , vol.22 , pp. 194-202
    • Yu, J.1
  • 32
    • 33646830110 scopus 로고    scopus 로고
    • Conservation and divergence of plant microRNA genes
    • Zhang B., et al. Conservation and divergence of plant microRNA genes. Plant J. 2006, 46:243-259.
    • (2006) Plant J. , vol.46 , pp. 243-259
    • Zhang, B.1
  • 33
    • 78651391839 scopus 로고    scopus 로고
    • MicroRNA-19 (miR-19) regulates tissue factor expression in breast cancer cells
    • Zhang X., et al. MicroRNA-19 (miR-19) regulates tissue factor expression in breast cancer cells. J. Biol. Chem. 2011, 286:1429-1435.
    • (2011) J. Biol. Chem. , vol.286 , pp. 1429-1435
    • Zhang, X.1
  • 34
    • 34249093687 scopus 로고    scopus 로고
    • A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii
    • Zhao T., et al. A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii. Genes Dev. 2007, 21:1190-1203.
    • (2007) Genes Dev. , vol.21 , pp. 1190-1203
    • Zhao, T.1
  • 35
    • 84862786018 scopus 로고    scopus 로고
    • Identification of microRNA-like RNAs in a plant pathogenic fungus Sclerotinia sclerotiorum by high-throughput sequencing
    • Zhou J., et al. Identification of microRNA-like RNAs in a plant pathogenic fungus Sclerotinia sclerotiorum by high-throughput sequencing. Mol. Genet. Genom. 2012, 287:275-282.
    • (2012) Mol. Genet. Genom. , vol.287 , pp. 275-282
    • Zhou, J.1
  • 36
    • 84869099026 scopus 로고    scopus 로고
    • Genome-wide identification and profiling of microRNA-like RNAs from Metarhizium anisopliae during development
    • Zhou Q., et al. Genome-wide identification and profiling of microRNA-like RNAs from Metarhizium anisopliae during development. Fungal Biol. 2012, 116:1156-1162.
    • (2012) Fungal Biol. , vol.116 , pp. 1156-1162
    • Zhou, Q.1
  • 37
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 2003, 31:3406-3415.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.