Echovirus 30 meningitis epidemic followed by an outbreak-specific RT-qPCR

Journal of Clinical Virology

Volumn 69, Issue , 2015, Pages 7-11

  Österback, Riikka ^a   Kalliokoski, Teemu ^b,c   Lähdesmäki, Tuire ^b   Peltola, Ville ^b   Ruuskanen, Olli ^b   Waris, Matti ^a  

^a UNIVERSITY OF TURKU   (Finland)

^b TURKU UNIVERSITY HOSPITAL   (Finland)

^c SEINÄJOKI CENTRAL HOSPITAL   (Finland)

Author keywords

Echovirus 30; Enterovirus; Meningitis; RT qPCR

Indexed keywords

CEFTRIAXONE; VIRUS PROTEIN; VIRUS RNA;

ADOLESCENT; AGE; AMINO ACID SEQUENCE; AMPLICON; ARTICLE; ASEPTIC MENINGITIS; CEREBROSPINAL FLUID; CHILD; CLINICAL ARTICLE; DRUG WITHDRAWAL; ECHOVIRUS 30; ENTEROVIRUS B; EPIDEMIC MENINGITIS; FEMALE; FEVER; FINLAND; GENDER; HEADACHE; HUMAN; HUMAN CELL; INCIDENCE; LEUKOCYTE COUNT; MALE; MOLECULAR EPIDEMIOLOGY; NAUSEA; PHYLOGENY; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; STIFF NECK; THROAT CULTURE; VIRUS CAPSID; VIRUS DETECTION; ADULT; CLASSIFICATION; ECHOVIRUS INFECTIONS; EPIDEMIC; GENETICS; INFANT; ISOLATION AND PURIFICATION; MENINGITIS, ASEPTIC; MENINGITIS, VIRAL; MIDDLE AGED; NEWBORN; PRESCHOOL CHILD; PROCEDURES; REAL TIME POLYMERASE CHAIN REACTION; TIME FACTOR; VIROLOGY; YOUNG ADULT;

ADOLESCENT; ADULT; CEREBROSPINAL FLUID; CHILD; CHILD, PRESCHOOL; DISEASE OUTBREAKS; ECHOVIRUS INFECTIONS; ENTEROVIRUS B, HUMAN; FEMALE; FINLAND; HUMANS; INCIDENCE; INFANT; INFANT, NEWBORN; MALE; MENINGITIS, ASEPTIC; MENINGITIS, VIRAL; MIDDLE AGED; PHYLOGENY; REAL-TIME POLYMERASE CHAIN REACTION; RNA, VIRAL; TIME FACTORS; YOUNG ADULT;

EID: 84937929782     PISSN: 13866532     EISSN: 18735967     Source Type: Journal    
DOI: 10.1016/j.jcv.2015.05.012     Document Type: Article

References (26)

1. McWilliam E.C., Leitch J., Bendig M., Cabrerizo J., Cardosa, Hyypiä T., Ivanova O.E., Kelly A., Kroes A.C., Lukashev A., MacAdam A., McMinn P., Roivainen M., Trallero G., Evans D.J., Simmonds P. Transmission networks and population turnover of echovirus 30. J. Virol. 2009, 83:2109-2118.
2. Oberste M.S., Maher K., Kennett M.L., Campbell J.J., Carpenter M.S., Schnurr D., Pallansch M.A. Molecular epidemiology and genetic diversity of echovirus type 30 (E30): genotypes correlate with temporal dynamics of E30 isolation. J. Clin. Microbiol. 1999, 37:3928-3933.
3. Savolainen-Kopra C., Paananen A., Blomqvist S., Klemola P., Simonen M.L., Lappalainen M., Vuorinen T., Kuusi M., Lemey P., Roivainen M. A large Finnish echovirus 30 outbreak was preceded by silent circulation of the same genotype. Virus Genes 2011, 42:28-36.
4. Savolainen C., Hovi T., Mulders M.N. Molecular epidemiology of echovirus 30 in Europe: succession of dominant sublineages within a single major genotype. Arch. Virol. 2001, 146:521-537.
5. Bailly J.L., Mirand A., Henquell C., Archimbaud C., Chambon M., Charbonné F., Traoré O., Peigue-Lafeuille H. Phylogeography of circulating populations of human echovirus 30 over 50 years: nucleotide polymorphism and signature of purifying selection in the VP1 capsid protein gene. Infect. Genet. Evol. 2009, 9:699-708.
6. Khetsuriani N., Lamonte-Fowlkes A., Oberst S., Pallansch M.A. Enterovirus surveillance - United States 1970-2005. MMWR Surveill. Summ. 2006, 55:1-20.
7. Pinto Junior V.L., Rebelo M.C., Costa E.V., Silva E.E., Bóia M.N. Description of a widespread outbreak of aseptic meningitis due to echovirus 30 in Rio de Janeiro state, Brazil. Braz. J. Infect. Dis. 2009, 13:367-370.
8. Martinez A.A., Castillo J., Sanchez M.C., Zaldivar Y., Mendoza Y., Tribaldos M., Acosta P., Smith R.E., Pascale J.M. Molecular diagnosis of echovirus 30 as the etiological agent in an outbreak of aseptic meningitis in Panama: May-June 2008. J. Infect. Dev. Countr. 2012, 6:836-841.
9. Hayashi T., Shirayoshi T., Nagano T., Yaoita H., Kogure S., Nariai H., Natsumeda T., Taniuchi M., Sandoh M., Sato Y. An outbreak of aseptic meningitis due to echovirus 30 in a high school baseball club - possible role of severe exercise for a high attack rate. Intern. Med. 2009, 48:1767-1771.
10. J. Perevoscikovs, A. Brila, L. Firstova, T. Komarova, I. Lucenko, J. Osmjana, L. Savrasova, I. Singarjova, J. Storozenko, N. Voloscuka, N. Zamjatina, Ongoing outbreak of aseptic meningitis in South-Eastern Latvia, June-August 2010. EuroSurveillance Aug 12;15(32) (2010).
11. G. Cosić, P. Durić, V. Milosević, J. Dekić, G. Canak, V. Turkulov, Ongoing outbreak of aseptic meningitis associated with echovirus type 30 in the City of Novi Sad Autonomous Province of Vojvodina, Serbia, June-July 2010. EuroSurveillance Aug 12;15(32) (2010).
12. Mantadakis E., Pogka V., Voulgari-Kokota A., Tsouvala E., Emmanouil M., Kremastinou J., Chatzimichael A., Mentis A. Echovirus 30 outbreak associated with a high meningitis attack rate in Thrace, Greece. Pediatr. Infect. Dis. J. 2013, 32(8).
13. Trallero G., Avellon A., Otero A., De Miguel T., Pérez C., Rabella N., Rubio G., Echevarria J.E., Cabrerizo M. Enteroviruses in Spain over the decade 1998-2007: virological and epidemiological studies. J. Clin. Virol. 2010, 47:170-176.
14. Lévêque N., Jacques J., Renois F., Antona D., Abely M., Chomel J.J., Andréoletti L. Phylogenetic analysis of Echovirus 30 isolated during the 2005 outbreak in France reveals existence of multiple lineages and suggests frequent recombination events. J. Clin. Virol. 2010, 48:137-141.
15. Nougairede A., Bessaud M., Thiberville S.D., Piorkowski G., Ninove L., Zandotti C., Charrel R.N., Guilhem N., de Lamballerie X. Widespread circulation of a new echovirus 30 variant causing aseptic meningitis and non-specific viral illness South-East France, 2013. J. Clin. Virol. 2014, 61:118-124.
16. Lee B.E., Davies H.D. Aseptic meningitis. Curr. Opin. Infect. Dis. 2007, 20:272-277.
17. Kares S., Lönnrot M., Vuorinen P., Oikarinen S., Taurianen S., Hyöty H. Real-time PCR for rapid diagnosis of entero- and rhinovirus infections using LightCycler. J. Clin. Virol. 2004, 29:99-104.
18. Kupila L., Vuorinen T., Vainionpäa R., Marttila R.J., Kotilainen P. Diagnosis of enteroviral meningitis by use of polymerase chain reaction of cerebrospinal fluid, stool, and serum specimens. Clin. Infect. Dis. 2005, 40:982-987.
19. Osterback R., Tevaluoto T., Ylinen T., Peltola V., Susi P., Hyypiä T., Waris M. Simultaneous detection and differentiation of human rhino- and enteroviruses in clinical specimens by real-time PCR with locked nucleic Acid probes. J. Clin. Microbiol. 2013, 51:3960-3967.
20. Susi P., Hattara L., Waris M., Luoma-Aho T., Siitari H., Hyypiä T., Saviranta P. Typing of enteroviruses by use of microwell oligonucleotide arrays. J. Clin. Microbiol. 2009, 47:1863-1870.
21. Nix W.A., Oberste M.S., Pallansch M.A. Sensitive, seminested PCR amplification of VP1 sequences for direct identification of all enterovirus serotypes from original clinical specimens. J. Clin. Microbiol. 2006, 44:2698-2704.
22. Jukes T.H., Cantor C.R. Evolution of protein molecules. Mammalian Protein Metabolism 1969, 21-132. Academic Press, New York. H.N. Munro (Ed.).
23. Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
24. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
25. Leitch E.C., Harvala H., Robertson I., Ubillos I., Templeton K., Simmonds P. Direct identification of human enterovirus serotypes in cerebrospinal fluid by amplification and sequencing of the VP1 region. J. Clin. Virol. 2009, 44:119-124.
26. Osterback R., Vuorinen T., Linna M., Susi P., Hyypiä T., Waris M. Coxsackievirus A6 and hand, foot, and mouth disease Finland. Emerg. Infect. Dis. 2009, 15:1485-1488.