Phylogenetic analysis of Echovirus 30 isolated during the 2005 outbreak in France reveals existence of multiple lineages and suggests frequent recombination events

Journal of Clinical Virology

Volumn 48, Issue 2, 2010, Pages 137-141

  Lévêque, Nicolas ^a,b   Jacques, Jérôme ^a,b   Renois, Fanny ^a,b   Antona, Denise ^c   Abely, Michel ^d   Chomel, Jean Jacques ^e   Andréoletti, Laurent ^a,b  

^a REIMS UNIVERSITY HOSPITAL   (France)

^b UNIVERSITÉ DE REIMS CHAMPAGNE ARDENNE   (France)

^c INSTITUT DE VEILLE SANITAIRE   (France)

^d AMERICAN MEMORIAL HOSPITAL   (France)

^e Centre National de Reference des Staphylocoques   (France)

Author keywords

Aseptic meningitis; Echovirus 30; Enterovirus; Phylogenetic analysis

Indexed keywords

DNA POLYMERASE; PROTEIN VP1;

ARTICLE; ASEPTIC MENINGITIS; CONTROLLED STUDY; ECHO VIRUS; EPIDEMIC; FRANCE; GENETIC VARIABILITY; HUMAN; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; STRAIN DIFFERENCE; UNINDEXED SEQUENCE; VIRAL GENETICS; VIRUS GENOME; VIRUS ISOLATION; VIRUS RECOMBINATION;

CLUSTER ANALYSIS; DISEASE OUTBREAKS; ECHOVIRUS INFECTIONS; ENTEROVIRUS B, HUMAN; FRANCE; GENOTYPE; HUMANS; MENINGITIS, ASEPTIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, GENETIC; RECOMBINATION, GENETIC; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; VIRAL PROTEINS;

EID: 77951623377     PISSN: 13866532     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jcv.2010.03.011     Document Type: Article

References (24)

1. Antona D., Lévêque N., Chomel J.J., Dubrou S., Levy-Bruhl D., and Lina B. Surveillance of enteroviruses in France, 2000-2004. Eur J Clin Microbiol Infect Dis 26 (2007) 403-412
2. Chomel J.J., Antona D., Thouvenot D., and Lina B. Three ECHOvirus serotypes responsible for outbreak of aseptic meningitis in Rhone-Alpes region, France. Eur J Clin Microbiol Infect Dis 22 (2003) 191-193
3. Mirand A., Archimbaud C., Henquell C., Michel Y., Chambon M., Peigue-Lafeuille H., et al. Prospective identification of HEV-B enteroviruses during the 2005 outbreak. J Med Virol 78 (2006) 1624-1634
4. Brunel D., Lévêque N., Jacques J., Renois F., Motte J., and Andréoletti L. Clinical and virological features of an aseptic meningitis outbreak in North-Eastern France, 2005. J Clin Virol 42 (2008) 225-228
5. Bailly J.L., Brosson D., Archimbaud C., Chambon M., Henquell C., and Peigue-Lafeuille H. Genetic diversity of echovirus 30 during a meningitis outbreak, demonstrated by direct molecular typing from cerebrospinal fluid. J Med Virol 68 (2002) 558-567
6. Chen G.W., Huang J.H., Lo Y.L., Tsao K.C., and Chang S.C. Mosaic genome structure of echovirus type 30 that circulated in Taiwan in 2001. Arch Virol 152 (2007) 1807-1817
7. Mirand A., Henquell C., Archimbaud C., Chambon M., Charbonne F., Peigue-Lafeuille H., et al. Emergence of recent echovirus 30 lineages is marked by serial genetic recombination events. J Gen Virol 88 (2007) 166-176
8. Oberste M.S., Maher K., Kennett M.L., Campbell J.J., Carpenter M.S., Schnurr D., et al. Molecular epidemiology and genetic diversity of echovirus type 30 (E30): genotypes correlate with temporal dynamics of E30 isolation. J Clin Microbiol 37 (1999) 3928-3933
9. Savolainen C., Hovi T., and Mulders M.N. Molecular epidemiology of echovirus 30 in Europe: succession of dominant sublineages within a single major genotype. Arch Virol 146 (2001) 521-537
10. Thoelen I., Lemey P., Van Der Donck I., Beuselinck K., Lindberg A.M., and Van Ranst M. Molecular typing and epidemiology of enteroviruses identified from an outbreak of aseptic meningitis in Belgium during the summer of 2000. J Med Virol 70 (2003) 420-429
11. Wang J.R., Tsai H.P., Huang S.W., Kuo P.H., Kiang D., and Liu C.C. Laboratory diagnosis and genetic analysis of an echovirus 30- associated outbreak of aseptic meningitis in Taiwan in 2001. J Clin Microbiol 40 (2002) 4439-4444
12. Yoshida H., Hong Z., Yoneyama T., Yoshii K., Shimizu H., Ota K., et al. Phylogenic analysis of echovirus type 30 isolated from a large epidemic of aseptic meningitis in Japan during 1997-1998. Jpn J Infect Dis 52 (1999) 160-163
13. Zhao Y.N., Jiang Q.W., Jiang R.J., Chen L., and Perlin D.S. Echovirus 30, Jiangsu Province, China. Emerg Infect Dis 11 (2005) 562-567
14. Bailly J.L., Mirand A., Henquell C., Archimbaud C., Chambon M., Charbonné F., et al. Phylogeography of circulating populations of human echovirus 30 over 50 years: Nucleotide polymorphism and signature of purifying selection in the VP1 capsid protein gene. Infect Genet Evol 9 (2008) 699-708
15. Lukashev A.N., Ivanova O.E., Eremeeva T.P., and Gmyl L.V. Analysis of echovirus 30 isolates from Russia and new independent states revealing frequent recombination and reemergence of ancient lineages. J Clin Microbiol 46 (2008) 665-670
16. Lukashev A.N., Lashkevich V.A., Ivanova O.E., Koroleva G.A., Hinkkanen A.E., and Ilonen J. Recombination in circulating enteroviruses. J Virol 77 (2003) 10423-10431
17. Oberste M.S., Nix W.A., Maher K., and Pallansch M.A. Improved molecular identification of enteroviruses by RT-PCR and amplicon sequencing. J Clin Virol 3 (2003) 375-377
18. Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4 (1987) 406-425
19. Kumar S., Tamura K., and Nei M. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings Bioinformat 5 (2004) 150-163
20. Nei M., and Kumar S. Molecular evolution and phylogenetics (2000), Oxford University Press, New York
21. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
22. Lindberg A.M., Andersson P., Savolainen C., Mulders M.N., and Hovi T. Evolution of the genome of Human enterovirus B: incongruence between phylogenies of the VP1 and 3CD regions indicates frequent recombination within the species. J Gen Virol 84 (2003) 1223-1235
23. Oberste M.S., Peñaranda S., and Pallansch M.A. RNA recombination plays a major role in genomic change during circulation of coxsackie B viruses. J Virol 78 (2004) 2948-2955
24. McWilliam Leitch E.C., Bendig J., Cabrerizo M., Cardosa J., Hyypiä T., Ivanova O.E., et al. Transmission networks and population turnover of echovirus 30. J Virol 83 (2009) 2109-2118