메뉴 건너뛰기




Volumn 16, Issue 1, 2015, Pages

Genomic analyses of pneumococci reveal a wide diversity of bacteriocins - including pneumocyclicin, a novel circular bacteriocin

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIOCIN; PNEUMOCYCLICIN; UNCLASSIFIED DRUG; BACTERIAL PROTEIN;

EID: 84937839424     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-015-1729-4     Document Type: Article
Times cited : (45)

References (62)
  • 1
    • 69949111769 scopus 로고    scopus 로고
    • Burden of disease caused by Streptococcus pneumoniae in children younger than 5 years: global estimates
    • O'Brien KL, Wolfson LJ, Watt JP, Henkle E, Deloria-Knoll M, McCall N, et al. Burden of disease caused by Streptococcus pneumoniae in children younger than 5 years: global estimates. Lancet. 2009;374(9693):893-902.
    • (2009) Lancet , vol.374 , Issue.9693 , pp. 893-902
    • O'Brien, K.L.1    Wolfson, L.J.2    Watt, J.P.3    Henkle, E.4    Deloria-Knoll, M.5    McCall, N.6
  • 2
    • 84879071622 scopus 로고    scopus 로고
    • Antimicrobial resistance in Asia: current epidemiology and clinical implications
    • Kang CI, Song JH. Antimicrobial resistance in Asia: current epidemiology and clinical implications. Infect Chemother. 2013;45(1):22-31.
    • (2013) Infect Chemother , vol.45 , Issue.1 , pp. 22-31
    • Kang, C.I.1    Song, J.H.2
  • 3
    • 84891879589 scopus 로고    scopus 로고
    • Pneumococcal vaccines WHO position paper - 2012
    • World Health Organization. Pneumococcal vaccines WHO position paper - 2012. Wkly Epidemiol Rec. 2012;87(14):129-44.
    • (2012) Wkly Epidemiol Rec , vol.87 , Issue.14 , pp. 129-144
  • 5
    • 84865009377 scopus 로고    scopus 로고
    • Biochemical, genetic, and serological characterization of two capsule subtypes among Streptococcus pneumoniae serotype 20 strains: discovery of a new pneumococcal serotype
    • Calix JJ, Porambo RJ, Brady AM, Larson TR, Yother J, Abeygunwardana C, et al. Biochemical, genetic, and serological characterization of two capsule subtypes among Streptococcus pneumoniae serotype 20 strains: discovery of a new pneumococcal serotype. J Biol Chem. 2012;287(33):27885-94.
    • (2012) J Biol Chem , vol.287 , Issue.33 , pp. 27885-27894
    • Calix, J.J.1    Porambo, R.J.2    Brady, A.M.3    Larson, T.R.4    Yother, J.5    Abeygunwardana, C.6
  • 6
    • 84884637235 scopus 로고    scopus 로고
    • Serotype-specific changes in invasive pneumococcal disease after pneumococcal conjugate vaccine introduction: a pooled analysis of multiple surveillance sites
    • Feikin DR, Kagucia EW, Loo JD, Link-Gelles R, Puhan MA, Cherian T, et al. Serotype-specific changes in invasive pneumococcal disease after pneumococcal conjugate vaccine introduction: a pooled analysis of multiple surveillance sites. PLoS Med. 2013;10(9):e1001517.
    • (2013) PLoS Med , vol.10 , Issue.9 , pp. e1001517
    • Feikin, D.R.1    Kagucia, E.W.2    Loo, J.D.3    Link-Gelles, R.4    Puhan, M.A.5    Cherian, T.6
  • 7
    • 80054093790 scopus 로고    scopus 로고
    • Serotype replacement in disease after pneumococcal vaccination
    • Weinberger DM, Malley R, Lipsitch M. Serotype replacement in disease after pneumococcal vaccination. Lancet. 2011;378(9807):1962-73.
    • (2011) Lancet , vol.378 , Issue.9807 , pp. 1962-1973
    • Weinberger, D.M.1    Malley, R.2    Lipsitch, M.3
  • 8
    • 37349058158 scopus 로고    scopus 로고
    • Vaccine escape recombinants emerge after pneumococcal vaccination in the United States
    • Brueggemann AB, Pai R, Crook DW, Beall B. Vaccine escape recombinants emerge after pneumococcal vaccination in the United States. PLoS Pathog. 2007;3(11):e168.
    • (2007) PLoS Pathog , vol.3 , Issue.11 , pp. e168
    • Brueggemann, A.B.1    Pai, R.2    Crook, D.W.3    Beall, B.4
  • 10
    • 84857655371 scopus 로고    scopus 로고
    • Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event
    • Golubchik T, Brueggemann AB, Street T, Gertz RE, Spencer CCA, Ho T, et al. Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event. Nat Genet. 2012;44(3):352-5.
    • (2012) Nat Genet , vol.44 , Issue.3 , pp. 352-355
    • Golubchik, T.1    Brueggemann, A.B.2    Street, T.3    Gertz, R.E.4    Spencer, C.C.A.5    Ho, T.6
  • 11
    • 4644321001 scopus 로고    scopus 로고
    • Epidemiology of the carrier state
    • Tuomanen E, Mitchell T, Morrison D, Spratt B, editors. Washington, DC: ASM Press
    • Crook DW, Brueggemann AB, Sleeman K, Peto TEA. Epidemiology of the carrier state. In: Tuomanen E, Mitchell T, Morrison D, Spratt B, editors. The pneumococcus. Washington, DC: ASM Press; 2004.
    • (2004) The pneumococcus
    • Crook, D.W.1    Brueggemann, A.B.2    Sleeman, K.3    Peto, T.E.A.4
  • 12
    • 73949157089 scopus 로고    scopus 로고
    • Between-strain competition in acquisition and clearance of pneumococcal carriage--epidemiologic evidence from a longitudinal study of day-care children
    • Auranen K, Mehtala J, Tanskanen A, Kaltoft MS. Between-strain competition in acquisition and clearance of pneumococcal carriage--epidemiologic evidence from a longitudinal study of day-care children. Amer J Epidemiol. 2010;171(2):169-76.
    • (2010) Amer J Epidemiol , vol.171 , Issue.2 , pp. 169-176
    • Auranen, K.1    Mehtala, J.2    Tanskanen, A.3    Kaltoft, M.S.4
  • 13
    • 0036983234 scopus 로고    scopus 로고
    • Dynamics of nasopharyngeal colonization by potential respiratory pathogens
    • García-Rodríguez JA MM. Dynamics of nasopharyngeal colonization by potential respiratory pathogens. J Antimicrob Chemother. 2002;50(Suppl S2):59-73.
    • (2002) J Antimicrob Chemother , vol.50 , pp. 59-73
    • García-Rodríguez JA, M.M.1
  • 15
    • 73949111750 scopus 로고    scopus 로고
    • Bacterial competition: surviving and thriving in the microbial jungle
    • Hibbing MEFC, Parsek MR, Peterson SB. Bacterial competition: surviving and thriving in the microbial jungle. Nat Rev Micro. 2010;8:15-25.
    • (2010) Nat Rev Micro , vol.8 , pp. 15-25
    • Hibbing, M.E.F.C.1    Parsek, M.R.2    Peterson, S.B.3
  • 16
    • 84865136218 scopus 로고    scopus 로고
    • Bacteriocin-mediated competitive interactions of bacterial populations and communities
    • Drider SR D, editor. New York, NY: Springer Science+Business Media
    • Riley M. Bacteriocin-mediated competitive interactions of bacterial populations and communities. In: Drider SR D, editor. Prokaryote Antimicrobial Peptides: From Genes to Applications. New York, NY: Springer Science+Business Media; 2011.
    • (2011) Prokaryote Antimicrobial Peptides: From Genes to Applications.
    • Riley, M.1
  • 17
    • 0033888896 scopus 로고    scopus 로고
    • Microarray-based identification of a novel Streptococcus pneumoniae regulon controlled by an autoinduced peptide
    • de Saizieu A, Gardès C, Flint N, Wagner C, Kamber M, Mitchell TJ, et al. Microarray-based identification of a novel Streptococcus pneumoniae regulon controlled by an autoinduced peptide. J Bacteriol. 2000;182(17):4696-703.
    • (2000) J Bacteriol , vol.182 , Issue.17 , pp. 4696-4703
    • Saizieu, A.1    Gardès, C.2    Flint, N.3    Wagner, C.4    Kamber, M.5    Mitchell, T.J.6
  • 18
    • 0034666640 scopus 로고    scopus 로고
    • Allelic variation in a peptide-inducible two-component system of Streptococcus pneumoniae
    • Reichmann P, Hakenbeck R. Allelic variation in a peptide-inducible two-component system of Streptococcus pneumoniae. FEMS Microbiol Lett. 2000;190(2):231-6.
    • (2000) FEMS Microbiol Lett , vol.190 , Issue.2 , pp. 231-236
    • Reichmann, P.1    Hakenbeck, R.2
  • 19
    • 0035082972 scopus 로고    scopus 로고
    • Mosaic genes and mosaic chromosomes: intra- and interspecies genomic variation of Streptococcus pneumoniae
    • Hakenbeck R, Balmelle N, Weber B, Gardès C, Keck W, de Saizieu A. Mosaic genes and mosaic chromosomes: intra- and interspecies genomic variation of Streptococcus pneumoniae. Infect Immun. 2001;69(4):2477-86.
    • (2001) Infect Immun , vol.69 , Issue.4 , pp. 2477-2486
    • Hakenbeck, R.1    Balmelle, N.2    Weber, B.3    Gardès, C.4    Keck, W.5    Saizieu, A.6
  • 20
    • 33846031140 scopus 로고    scopus 로고
    • The blp bacteriocins of Streptococcus pneumoniae mediate intraspecies competition both in vitro and in vivo
    • Dawid S, Roche AM, Weiser JN. The blp bacteriocins of Streptococcus pneumoniae mediate intraspecies competition both in vitro and in vivo. Infect Immun. 2007;75(1):443-51.
    • (2007) Infect Immun , vol.75 , Issue.1 , pp. 443-451
    • Dawid, S.1    Roche, A.M.2    Weiser, J.N.3
  • 21
    • 35648954612 scopus 로고    scopus 로고
    • Diversity of bacteriocins and activity spectrum in Streptococcus pneumoniae
    • Lux T, Nuhn M, Hakenbeck R, Reichmann P. Diversity of bacteriocins and activity spectrum in Streptococcus pneumoniae. J Bacteriol. 2007;189(21):7741-51.
    • (2007) J Bacteriol , vol.189 , Issue.21 , pp. 7741-7751
    • Lux, T.1    Nuhn, M.2    Hakenbeck, R.3    Reichmann, P.4
  • 22
    • 80455168610 scopus 로고    scopus 로고
    • Conserved mutations in the pneumococcal bacteriocin transporter gene, blpA, result in a complex population consisting of producers and cheaters
    • e00179-11
    • Son MR, Shchepetov M, Adrian PV, Madhi SA, de Gouveia L, von Gottberg A, Klugman KP, Weiser JN, Dawid S: Conserved mutations in the pneumococcal bacteriocin transporter gene, blpA, result in a complex population consisting of producers and cheaters. mBio 2011;2(5):e00179-11.
    • (2011) mBio , vol.2 , Issue.5
    • Son, M.R.1    Shchepetov, M.2    Adrian, P.V.3    Madhi, S.A.4    de Gouveia, L.5    von Gottberg, A.6    Klugman, K.P.7    Weiser, J.N.8    Dawid, S.9
  • 23
    • 0029745349 scopus 로고    scopus 로고
    • Regulation of competence for genetic transformation in Streptococcus pneumoniae by an auto-induced peptide pheromone and a two-component regulatory system
    • Pestova EV, Håvarstein LS, Morrison DA. Regulation of competence for genetic transformation in Streptococcus pneumoniae by an auto-induced peptide pheromone and a two-component regulatory system. Mol Microbiol. 1996;21(4):853-62.
    • (1996) Mol Microbiol , vol.21 , Issue.4 , pp. 853-862
    • Pestova, E.V.1    Håvarstein, L.S.2    Morrison, D.A.3
  • 24
    • 0029013783 scopus 로고
    • A family of bacteriocin ABC transporters carry out proteolytic processing of their substrates concomitant with export
    • Havarstein LS, Diep DB, Nes IF. A family of bacteriocin ABC transporters carry out proteolytic processing of their substrates concomitant with export. Mol Microbiol. 1995;16(2):229-40.
    • (1995) Mol Microbiol , vol.16 , Issue.2 , pp. 229-240
    • Havarstein, L.S.1    Diep, D.B.2    Nes, I.F.3
  • 25
    • 77950652492 scopus 로고    scopus 로고
    • The Abi proteins and their involvement in bacteriocin self-immunity
    • Kjos M, Snipen L, Salehian Z, Nes IF, Diep DB. The Abi proteins and their involvement in bacteriocin self-immunity. J Bacteriol. 2010;192(8):2068-76.
    • (2010) J Bacteriol , vol.192 , Issue.8 , pp. 2068-2076
    • Kjos, M.1    Snipen, L.2    Salehian, Z.3    Nes, I.F.4    Diep, D.B.5
  • 26
    • 0035339494 scopus 로고    scopus 로고
    • Type II CAAX prenyl endopeptidases belong to a novel superfamily of putative membrane-bound metalloproteases
    • Pei J, Grishin NV. Type II CAAX prenyl endopeptidases belong to a novel superfamily of putative membrane-bound metalloproteases. Trends Biochem Sci. 2001;26(5):275-7.
    • (2001) Trends Biochem Sci , vol.26 , Issue.5 , pp. 275-277
    • Pei, J.1    Grishin, N.V.2
  • 27
    • 84937879999 scopus 로고    scopus 로고
    • Accessed 31 July
    • http://pubmlst.org/spneumoniae . Accessed 31 July 2014.
    • (2014)
  • 28
    • 0034769889 scopus 로고    scopus 로고
    • Recombination and the population structures of bacterial pathogens
    • Feil EJ, Spratt BG. Recombination and the population structures of bacterial pathogens. Ann Rev Microbiol. 2001;55:561-90.
    • (2001) Ann Rev Microbiol , vol.55 , pp. 561-590
    • Feil, E.J.1    Spratt, B.G.2
  • 29
    • 0033978703 scopus 로고    scopus 로고
    • Adaptation to the environment: Streptococcus pneumoniae, a paradigm for recombination-mediated genetic plasticity?
    • Claverys JP, Prudhomme M, Mortier-Barriere I, Martin B. Adaptation to the environment: Streptococcus pneumoniae, a paradigm for recombination-mediated genetic plasticity? Mol Microbiol. 2000;35(2):251-9.
    • (2000) Mol Microbiol , vol.35 , Issue.2 , pp. 251-259
    • Claverys, J.P.1    Prudhomme, M.2    Mortier-Barriere, I.3    Martin, B.4
  • 32
    • 84864554104 scopus 로고    scopus 로고
    • Discovering the bacterial circular proteins: bacteriocins, cyanobactins, and pilins
    • Montalban-Lopez M, Sanchez-Hidalgo M, Cebrian R, Maqueda M. Discovering the bacterial circular proteins: bacteriocins, cyanobactins, and pilins. J Biol Chem. 2012;287(32):27007-13.
    • (2012) J Biol Chem , vol.287 , Issue.32 , pp. 27007-27013
    • Montalban-Lopez, M.1    Sanchez-Hidalgo, M.2    Cebrian, R.3    Maqueda, M.4
  • 33
    • 34249068328 scopus 로고    scopus 로고
    • Uberolysin: a novel cyclic bacteriocin produced by Streptococcus uberis
    • Wirawan RE, Swanson KM, Kleffmann T, Jack RW, Tagg JR. Uberolysin: a novel cyclic bacteriocin produced by Streptococcus uberis. Microbiology. 2007;153(Pt 5):1619-30.
    • (2007) Microbiology , vol.153 , pp. 1619-1630
    • Wirawan, R.E.1    Swanson, K.M.2    Kleffmann, T.3    Jack, R.W.4    Tagg, J.R.5
  • 34
    • 0142136187 scopus 로고    scopus 로고
    • Functional analysis of the gene cluster involved in production of the bacteriocin circularin A by Clostridium beijerinckii ATCC 25752
    • Kemperman R, Jonker M, Nauta A, Kuipers OP, Kok J. Functional analysis of the gene cluster involved in production of the bacteriocin circularin A by Clostridium beijerinckii ATCC 25752. Appl Environ Microbiol. 2003;69(10):5839-48.
    • (2003) Appl Environ Microbiol , vol.69 , Issue.10 , pp. 5839-5848
    • Kemperman, R.1    Jonker, M.2    Nauta, A.3    Kuipers, O.P.4    Kok, J.5
  • 35
    • 70350418770 scopus 로고    scopus 로고
    • The three-dimensional structure of carnocyclin A reveals that many circular bacteriocins share a common structural motif
    • Martin-Visscher LA, Gong X, Duszyk M, Vederas JC. The three-dimensional structure of carnocyclin A reveals that many circular bacteriocins share a common structural motif. J Biol Chem. 2009;284(42):28674-81.
    • (2009) J Biol Chem , vol.284 , Issue.42 , pp. 28674-28681
    • Martin-Visscher, L.A.1    Gong, X.2    Duszyk, M.3    Vederas, J.C.4
  • 36
    • 78449265553 scopus 로고    scopus 로고
    • Cloning and characterization of the gene cluster involved in the production of the circular bacteriocin carnocyclin A
    • van Belkum M, Martin-Visscher L, Vederas J: Cloning and characterization of the gene cluster involved in the production of the circular bacteriocin carnocyclin A. Probiotics Antimicrob Proteins 2010;2(4):218-225.
    • (2010) Probiotics Antimicrob Proteins , vol.2 , Issue.4 , pp. 218-225
    • van Belkum, M.1    Martin-Visscher, L.2    Vederas, J.3
  • 37
    • 0031962435 scopus 로고    scopus 로고
    • Analysis of the gene cluster involved in production and immunity of the peptide antibiotic AS-48 in Enterococcus faecalis
    • Martinez-Bueno M, Valdivia E, Galvez A, Coyette J, Maqueda M. Analysis of the gene cluster involved in production and immunity of the peptide antibiotic AS-48 in Enterococcus faecalis. Mol Microbiol. 1998;27(2):347-58.
    • (1998) Mol Microbiol , vol.27 , Issue.2 , pp. 347-358
    • Martinez-Bueno, M.1    Valdivia, E.2    Galvez, A.3    Coyette, J.4    Maqueda, M.5
  • 39
    • 0028894290 scopus 로고
    • Competence for genetic transformation in Streptococcus pneumoniae: organization of a regulatory locus with homology to two lactococcin A secretion genes
    • Hui FM, Zhou L, Morrison DA. Competence for genetic transformation in Streptococcus pneumoniae: organization of a regulatory locus with homology to two lactococcin A secretion genes. Gene. 1995;153(1):25-31.
    • (1995) Gene , vol.153 , Issue.1 , pp. 25-31
    • Hui, F.M.1    Zhou, L.2    Morrison, D.A.3
  • 40
    • 0025956840 scopus 로고
    • Genetic transformation in Streptococcus pneumoniae: nucleotide sequence analysis shows comA, a gene required for competence induction, to be a member of the bacterial ATP-dependent transport protein family
    • Hui FMMD. Genetic transformation in Streptococcus pneumoniae: nucleotide sequence analysis shows comA, a gene required for competence induction, to be a member of the bacterial ATP-dependent transport protein family. J Bacteriol. 1991;173(1):372-81.
    • (1991) J Bacteriol , vol.173 , Issue.1 , pp. 372-381
    • Hui, F.M.M.D.1
  • 41
    • 84883822252 scopus 로고    scopus 로고
    • Multicoloured greenbeards, bacteriocin diversity and the rock-paper-scissors game
    • Biernaskie JMGA, West SA. Multicoloured greenbeards, bacteriocin diversity and the rock-paper-scissors game. J Evol Biol. 2013;26:2081-94.
    • (2013) J Evol Biol , vol.26 , pp. 2081-2094
    • Biernaskie, J.M.G.A.1    West, S.A.2
  • 42
    • 84907960253 scopus 로고    scopus 로고
    • Dynamic changes in the Streptococcus pneumoniae transcriptome during transition from biofilm formation to invasive disease upon influenza A virus infection
    • Pettigrew MM, Marks LR, Kong Y, Gent JF, Roche-Hakansson H, Hakansson AP. Dynamic changes in the Streptococcus pneumoniae transcriptome during transition from biofilm formation to invasive disease upon influenza A virus infection. Infect Immun. 2014;82(11):4607-19.
    • (2014) Infect Immun , vol.82 , Issue.11 , pp. 4607-4619
    • Pettigrew, M.M.1    Marks, L.R.2    Kong, Y.3    Gent, J.F.4    Roche-Hakansson, H.5    Hakansson, A.P.6
  • 45
    • 84880350266 scopus 로고    scopus 로고
    • Evidence of antimicrobial resistance-conferring genetic elements among pneumococci isolated prior to 1974
    • Wyres KL, van Tonder A, Lambertsen LM, Hakenbeck R, Parkhill J, Bentley SD, et al. Evidence of antimicrobial resistance-conferring genetic elements among pneumococci isolated prior to 1974. BMC Genomics. 2013;14:500.
    • (2013) BMC Genomics , vol.14 , pp. 500
    • Wyres, K.L.1    Tonder, A.2    Lambertsen, L.M.3    Hakenbeck, R.4    Parkhill, J.5    Bentley, S.D.6
  • 46
    • 84916890554 scopus 로고    scopus 로고
    • Defining the estimated core genome of bacterial populations using a Bayesian decision model
    • van Tonder A, Mistry S, Bray JE, Hill DMC, Cody AJ, Farmer CL, et al. Defining the estimated core genome of bacterial populations using a Bayesian decision model. PLoS Comp Biol. 2014;10(8):e1003788.
    • (2014) PLoS Comp Biol , vol.10 , Issue.8 , pp. e1003788
    • Tonder, A.1    Mistry, S.2    Bray, J.E.3    Hill, D.M.C.4    Cody, A.J.5    Farmer, C.L.6
  • 47
    • 84937845692 scopus 로고    scopus 로고
    • Accessed 15 November
    • http://www.ncbi.nlm.nih.gov/genbank . Accessed 15 November 2012.
    • (2012)
  • 48
    • 78650827616 scopus 로고    scopus 로고
    • BIGSdb: Scalable analysis of bacterial genome variation at the population level
    • Jolley KA, Maiden MC. BIGSdb: Scalable analysis of bacterial genome variation at the population level. BMC Bioinform. 2010;11:595.
    • (2010) BMC Bioinform , vol.11 , pp. 595
    • Jolley, K.A.1    Maiden, M.C.2
  • 49
    • 84894406777 scopus 로고    scopus 로고
    • Intelligent Systems for Molecular Biology meeting: 11-13 Jul 2010 Accessed 15 March
    • Ponstingl H, Ning Z: SMALT - a new mapper for DNA sequencing reads. In: Intelligent Systems for Molecular Biology meeting: 11-13 Jul 2010. https://www.sanger.ac.uk/resources/software/smalt/ . Accessed 15 March 2013.
    • (2013) SMALT - a new mapper for DNA sequencing reads
    • Ponstingl, H.1    Ning, Z.2
  • 50
    • 77954506029 scopus 로고    scopus 로고
    • Gap5-editing the billion fragment sequence assembly
    • Bonfield JK, Whitwham A. Gap5-editing the billion fragment sequence assembly. Bioinformatics. 2010;26(14):1699-703.
    • (2010) Bioinformatics , vol.26 , Issue.14 , pp. 1699-1703
    • Bonfield, J.K.1    Whitwham, A.2
  • 52
    • 84901417347 scopus 로고    scopus 로고
    • Prokka: rapid prokaryotic genome annotation
    • Seemann T. Prokka: rapid prokaryotic genome annotation. Bioinformatics. 2014;30(14):2068-9.
    • (2014) Bioinformatics , vol.30 , Issue.14 , pp. 2068-2069
    • Seemann, T.1
  • 55
    • 84883572507 scopus 로고    scopus 로고
    • BAGEL3: Automated identification of genes encoding bacteriocins and (non-)bactericidal posttranslationally modified peptides
    • van Heel AJ, de Jong A, Montalban-Lopez M, Kok J, Kuipers OP. BAGEL3: Automated identification of genes encoding bacteriocins and (non-)bactericidal posttranslationally modified peptides. Nucleic Acids Res. 2013;41:W448-53. Web Server issue.
    • (2013) Nucleic Acids Res , vol.41 , pp. W448-W453
    • Heel, A.J.1    Jong, A.2    Montalban-Lopez, M.3    Kok, J.4    Kuipers, O.P.5
  • 56
    • 77249117208 scopus 로고    scopus 로고
    • BACTIBASE second release: a database and tool platform for bacteriocin characterization
    • Hammami R, Zouhir A, Le Lay C, Ben Hamida J, Fliss I. BACTIBASE second release: a database and tool platform for bacteriocin characterization. BMC Microbiol. 2010;10:22.
    • (2010) BMC Microbiol , vol.10 , pp. 22
    • Hammami, R.1    Zouhir, A.2    Lay, C.3    Ben Hamida, J.4    Fliss, I.5
  • 57
    • 84937870941 scopus 로고    scopus 로고
    • Accessed 1 July
    • http://pubmlst.org . Accessed 1 July 2014.
    • (2014)
  • 58
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;28(10):2731-9.
    • (2011) Mol Biol Evol , vol.28 , Issue.10 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 59
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser. 1999;41:95-8.
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 60
    • 77956193448 scopus 로고    scopus 로고
    • ProgressiveMauve: multiple genome alignment with gene gain, loss and rearrangement
    • Darling AE, Mau B, Perna NT. ProgressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One. 2010;5(6):e11147.
    • (2010) PLoS One , vol.5 , Issue.6 , pp. e11147
    • Darling, A.E.1    Mau, B.2    Perna, N.T.3
  • 61
  • 62
    • 84937935835 scopus 로고    scopus 로고
    • Accessed 15 July
    • https://www.inkscape.org . Accessed 15 July 2014.
    • (2014)


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.