-
1
-
-
69949111769
-
Burden of disease caused by Streptococcus pneumoniae in children younger than 5 years: global estimates
-
O'Brien KL, Wolfson LJ, Watt JP, Henkle E, Deloria-Knoll M, McCall N, et al. Burden of disease caused by Streptococcus pneumoniae in children younger than 5 years: global estimates. Lancet. 2009;374(9693):893-902.
-
(2009)
Lancet
, vol.374
, Issue.9693
, pp. 893-902
-
-
O'Brien, K.L.1
Wolfson, L.J.2
Watt, J.P.3
Henkle, E.4
Deloria-Knoll, M.5
McCall, N.6
-
2
-
-
84879071622
-
Antimicrobial resistance in Asia: current epidemiology and clinical implications
-
Kang CI, Song JH. Antimicrobial resistance in Asia: current epidemiology and clinical implications. Infect Chemother. 2013;45(1):22-31.
-
(2013)
Infect Chemother
, vol.45
, Issue.1
, pp. 22-31
-
-
Kang, C.I.1
Song, J.H.2
-
3
-
-
84891879589
-
Pneumococcal vaccines WHO position paper - 2012
-
World Health Organization. Pneumococcal vaccines WHO position paper - 2012. Wkly Epidemiol Rec. 2012;87(14):129-44.
-
(2012)
Wkly Epidemiol Rec
, vol.87
, Issue.14
, pp. 129-144
-
-
-
4
-
-
33645774644
-
Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes
-
Bentley SD, Aanensen DM, Mavroidi A, Saunders D, Rabbinowitsch E, Collins M, et al. Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes. PLoS Genet. 2006;2(3):262-9.
-
(2006)
PLoS Genet
, vol.2
, Issue.3
, pp. 262-269
-
-
Bentley, S.D.1
Aanensen, D.M.2
Mavroidi, A.3
Saunders, D.4
Rabbinowitsch, E.5
Collins, M.6
-
5
-
-
84865009377
-
Biochemical, genetic, and serological characterization of two capsule subtypes among Streptococcus pneumoniae serotype 20 strains: discovery of a new pneumococcal serotype
-
Calix JJ, Porambo RJ, Brady AM, Larson TR, Yother J, Abeygunwardana C, et al. Biochemical, genetic, and serological characterization of two capsule subtypes among Streptococcus pneumoniae serotype 20 strains: discovery of a new pneumococcal serotype. J Biol Chem. 2012;287(33):27885-94.
-
(2012)
J Biol Chem
, vol.287
, Issue.33
, pp. 27885-27894
-
-
Calix, J.J.1
Porambo, R.J.2
Brady, A.M.3
Larson, T.R.4
Yother, J.5
Abeygunwardana, C.6
-
6
-
-
84884637235
-
Serotype-specific changes in invasive pneumococcal disease after pneumococcal conjugate vaccine introduction: a pooled analysis of multiple surveillance sites
-
Feikin DR, Kagucia EW, Loo JD, Link-Gelles R, Puhan MA, Cherian T, et al. Serotype-specific changes in invasive pneumococcal disease after pneumococcal conjugate vaccine introduction: a pooled analysis of multiple surveillance sites. PLoS Med. 2013;10(9):e1001517.
-
(2013)
PLoS Med
, vol.10
, Issue.9
, pp. e1001517
-
-
Feikin, D.R.1
Kagucia, E.W.2
Loo, J.D.3
Link-Gelles, R.4
Puhan, M.A.5
Cherian, T.6
-
7
-
-
80054093790
-
Serotype replacement in disease after pneumococcal vaccination
-
Weinberger DM, Malley R, Lipsitch M. Serotype replacement in disease after pneumococcal vaccination. Lancet. 2011;378(9807):1962-73.
-
(2011)
Lancet
, vol.378
, Issue.9807
, pp. 1962-1973
-
-
Weinberger, D.M.1
Malley, R.2
Lipsitch, M.3
-
8
-
-
37349058158
-
Vaccine escape recombinants emerge after pneumococcal vaccination in the United States
-
Brueggemann AB, Pai R, Crook DW, Beall B. Vaccine escape recombinants emerge after pneumococcal vaccination in the United States. PLoS Pathog. 2007;3(11):e168.
-
(2007)
PLoS Pathog
, vol.3
, Issue.11
, pp. e168
-
-
Brueggemann, A.B.1
Pai, R.2
Crook, D.W.3
Beall, B.4
-
9
-
-
79955041157
-
Shifting genetic structure of invasive serotype 19A pneumococci in the United States
-
Beall BW, Gertz RE, Hulkower RL, Whitney CG, Moore MR, Brueggemann AB. Shifting genetic structure of invasive serotype 19A pneumococci in the United States. J Infect Dis. 2011;203(10):1360-8.
-
(2011)
J Infect Dis
, vol.203
, Issue.10
, pp. 1360-1368
-
-
Beall, B.W.1
Gertz, R.E.2
Hulkower, R.L.3
Whitney, C.G.4
Moore, M.R.5
Brueggemann, A.B.6
-
10
-
-
84857655371
-
Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event
-
Golubchik T, Brueggemann AB, Street T, Gertz RE, Spencer CCA, Ho T, et al. Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event. Nat Genet. 2012;44(3):352-5.
-
(2012)
Nat Genet
, vol.44
, Issue.3
, pp. 352-355
-
-
Golubchik, T.1
Brueggemann, A.B.2
Street, T.3
Gertz, R.E.4
Spencer, C.C.A.5
Ho, T.6
-
11
-
-
4644321001
-
Epidemiology of the carrier state
-
Tuomanen E, Mitchell T, Morrison D, Spratt B, editors. Washington, DC: ASM Press
-
Crook DW, Brueggemann AB, Sleeman K, Peto TEA. Epidemiology of the carrier state. In: Tuomanen E, Mitchell T, Morrison D, Spratt B, editors. The pneumococcus. Washington, DC: ASM Press; 2004.
-
(2004)
The pneumococcus
-
-
Crook, D.W.1
Brueggemann, A.B.2
Sleeman, K.3
Peto, T.E.A.4
-
12
-
-
73949157089
-
Between-strain competition in acquisition and clearance of pneumococcal carriage--epidemiologic evidence from a longitudinal study of day-care children
-
Auranen K, Mehtala J, Tanskanen A, Kaltoft MS. Between-strain competition in acquisition and clearance of pneumococcal carriage--epidemiologic evidence from a longitudinal study of day-care children. Amer J Epidemiol. 2010;171(2):169-76.
-
(2010)
Amer J Epidemiol
, vol.171
, Issue.2
, pp. 169-176
-
-
Auranen, K.1
Mehtala, J.2
Tanskanen, A.3
Kaltoft, M.S.4
-
13
-
-
0036983234
-
Dynamics of nasopharyngeal colonization by potential respiratory pathogens
-
García-Rodríguez JA MM. Dynamics of nasopharyngeal colonization by potential respiratory pathogens. J Antimicrob Chemother. 2002;50(Suppl S2):59-73.
-
(2002)
J Antimicrob Chemother
, vol.50
, pp. 59-73
-
-
García-Rodríguez JA, M.M.1
-
15
-
-
73949111750
-
Bacterial competition: surviving and thriving in the microbial jungle
-
Hibbing MEFC, Parsek MR, Peterson SB. Bacterial competition: surviving and thriving in the microbial jungle. Nat Rev Micro. 2010;8:15-25.
-
(2010)
Nat Rev Micro
, vol.8
, pp. 15-25
-
-
Hibbing, M.E.F.C.1
Parsek, M.R.2
Peterson, S.B.3
-
16
-
-
84865136218
-
Bacteriocin-mediated competitive interactions of bacterial populations and communities
-
Drider SR D, editor. New York, NY: Springer Science+Business Media
-
Riley M. Bacteriocin-mediated competitive interactions of bacterial populations and communities. In: Drider SR D, editor. Prokaryote Antimicrobial Peptides: From Genes to Applications. New York, NY: Springer Science+Business Media; 2011.
-
(2011)
Prokaryote Antimicrobial Peptides: From Genes to Applications.
-
-
Riley, M.1
-
17
-
-
0033888896
-
Microarray-based identification of a novel Streptococcus pneumoniae regulon controlled by an autoinduced peptide
-
de Saizieu A, Gardès C, Flint N, Wagner C, Kamber M, Mitchell TJ, et al. Microarray-based identification of a novel Streptococcus pneumoniae regulon controlled by an autoinduced peptide. J Bacteriol. 2000;182(17):4696-703.
-
(2000)
J Bacteriol
, vol.182
, Issue.17
, pp. 4696-4703
-
-
Saizieu, A.1
Gardès, C.2
Flint, N.3
Wagner, C.4
Kamber, M.5
Mitchell, T.J.6
-
18
-
-
0034666640
-
Allelic variation in a peptide-inducible two-component system of Streptococcus pneumoniae
-
Reichmann P, Hakenbeck R. Allelic variation in a peptide-inducible two-component system of Streptococcus pneumoniae. FEMS Microbiol Lett. 2000;190(2):231-6.
-
(2000)
FEMS Microbiol Lett
, vol.190
, Issue.2
, pp. 231-236
-
-
Reichmann, P.1
Hakenbeck, R.2
-
19
-
-
0035082972
-
Mosaic genes and mosaic chromosomes: intra- and interspecies genomic variation of Streptococcus pneumoniae
-
Hakenbeck R, Balmelle N, Weber B, Gardès C, Keck W, de Saizieu A. Mosaic genes and mosaic chromosomes: intra- and interspecies genomic variation of Streptococcus pneumoniae. Infect Immun. 2001;69(4):2477-86.
-
(2001)
Infect Immun
, vol.69
, Issue.4
, pp. 2477-2486
-
-
Hakenbeck, R.1
Balmelle, N.2
Weber, B.3
Gardès, C.4
Keck, W.5
Saizieu, A.6
-
20
-
-
33846031140
-
The blp bacteriocins of Streptococcus pneumoniae mediate intraspecies competition both in vitro and in vivo
-
Dawid S, Roche AM, Weiser JN. The blp bacteriocins of Streptococcus pneumoniae mediate intraspecies competition both in vitro and in vivo. Infect Immun. 2007;75(1):443-51.
-
(2007)
Infect Immun
, vol.75
, Issue.1
, pp. 443-451
-
-
Dawid, S.1
Roche, A.M.2
Weiser, J.N.3
-
21
-
-
35648954612
-
Diversity of bacteriocins and activity spectrum in Streptococcus pneumoniae
-
Lux T, Nuhn M, Hakenbeck R, Reichmann P. Diversity of bacteriocins and activity spectrum in Streptococcus pneumoniae. J Bacteriol. 2007;189(21):7741-51.
-
(2007)
J Bacteriol
, vol.189
, Issue.21
, pp. 7741-7751
-
-
Lux, T.1
Nuhn, M.2
Hakenbeck, R.3
Reichmann, P.4
-
22
-
-
80455168610
-
Conserved mutations in the pneumococcal bacteriocin transporter gene, blpA, result in a complex population consisting of producers and cheaters
-
e00179-11
-
Son MR, Shchepetov M, Adrian PV, Madhi SA, de Gouveia L, von Gottberg A, Klugman KP, Weiser JN, Dawid S: Conserved mutations in the pneumococcal bacteriocin transporter gene, blpA, result in a complex population consisting of producers and cheaters. mBio 2011;2(5):e00179-11.
-
(2011)
mBio
, vol.2
, Issue.5
-
-
Son, M.R.1
Shchepetov, M.2
Adrian, P.V.3
Madhi, S.A.4
de Gouveia, L.5
von Gottberg, A.6
Klugman, K.P.7
Weiser, J.N.8
Dawid, S.9
-
23
-
-
0029745349
-
Regulation of competence for genetic transformation in Streptococcus pneumoniae by an auto-induced peptide pheromone and a two-component regulatory system
-
Pestova EV, Håvarstein LS, Morrison DA. Regulation of competence for genetic transformation in Streptococcus pneumoniae by an auto-induced peptide pheromone and a two-component regulatory system. Mol Microbiol. 1996;21(4):853-62.
-
(1996)
Mol Microbiol
, vol.21
, Issue.4
, pp. 853-862
-
-
Pestova, E.V.1
Håvarstein, L.S.2
Morrison, D.A.3
-
24
-
-
0029013783
-
A family of bacteriocin ABC transporters carry out proteolytic processing of their substrates concomitant with export
-
Havarstein LS, Diep DB, Nes IF. A family of bacteriocin ABC transporters carry out proteolytic processing of their substrates concomitant with export. Mol Microbiol. 1995;16(2):229-40.
-
(1995)
Mol Microbiol
, vol.16
, Issue.2
, pp. 229-240
-
-
Havarstein, L.S.1
Diep, D.B.2
Nes, I.F.3
-
25
-
-
77950652492
-
The Abi proteins and their involvement in bacteriocin self-immunity
-
Kjos M, Snipen L, Salehian Z, Nes IF, Diep DB. The Abi proteins and their involvement in bacteriocin self-immunity. J Bacteriol. 2010;192(8):2068-76.
-
(2010)
J Bacteriol
, vol.192
, Issue.8
, pp. 2068-2076
-
-
Kjos, M.1
Snipen, L.2
Salehian, Z.3
Nes, I.F.4
Diep, D.B.5
-
26
-
-
0035339494
-
Type II CAAX prenyl endopeptidases belong to a novel superfamily of putative membrane-bound metalloproteases
-
Pei J, Grishin NV. Type II CAAX prenyl endopeptidases belong to a novel superfamily of putative membrane-bound metalloproteases. Trends Biochem Sci. 2001;26(5):275-7.
-
(2001)
Trends Biochem Sci
, vol.26
, Issue.5
, pp. 275-277
-
-
Pei, J.1
Grishin, N.V.2
-
27
-
-
84937879999
-
-
Accessed 31 July
-
http://pubmlst.org/spneumoniae . Accessed 31 July 2014.
-
(2014)
-
-
-
28
-
-
0034769889
-
Recombination and the population structures of bacterial pathogens
-
Feil EJ, Spratt BG. Recombination and the population structures of bacterial pathogens. Ann Rev Microbiol. 2001;55:561-90.
-
(2001)
Ann Rev Microbiol
, vol.55
, pp. 561-590
-
-
Feil, E.J.1
Spratt, B.G.2
-
29
-
-
0033978703
-
Adaptation to the environment: Streptococcus pneumoniae, a paradigm for recombination-mediated genetic plasticity?
-
Claverys JP, Prudhomme M, Mortier-Barriere I, Martin B. Adaptation to the environment: Streptococcus pneumoniae, a paradigm for recombination-mediated genetic plasticity? Mol Microbiol. 2000;35(2):251-9.
-
(2000)
Mol Microbiol
, vol.35
, Issue.2
, pp. 251-259
-
-
Claverys, J.P.1
Prudhomme, M.2
Mortier-Barriere, I.3
Martin, B.4
-
30
-
-
37349105310
-
Genetic features of circular bacteriocins produced by Gram-positive bacteria
-
Maqueda M, Sanchez-Hidalgo M, Fernandez M, Montalban-Lopez M, Valdivia E, Martinez-Bueno M. Genetic features of circular bacteriocins produced by Gram-positive bacteria. FEMS Microbiol Rev. 2008;32(1):2-22.
-
(2008)
FEMS Microbiol Rev
, vol.32
, Issue.1
, pp. 2-22
-
-
Maqueda, M.1
Sanchez-Hidalgo, M.2
Fernandez, M.3
Montalban-Lopez, M.4
Valdivia, E.5
Martinez-Bueno, M.6
-
32
-
-
84864554104
-
Discovering the bacterial circular proteins: bacteriocins, cyanobactins, and pilins
-
Montalban-Lopez M, Sanchez-Hidalgo M, Cebrian R, Maqueda M. Discovering the bacterial circular proteins: bacteriocins, cyanobactins, and pilins. J Biol Chem. 2012;287(32):27007-13.
-
(2012)
J Biol Chem
, vol.287
, Issue.32
, pp. 27007-27013
-
-
Montalban-Lopez, M.1
Sanchez-Hidalgo, M.2
Cebrian, R.3
Maqueda, M.4
-
33
-
-
34249068328
-
Uberolysin: a novel cyclic bacteriocin produced by Streptococcus uberis
-
Wirawan RE, Swanson KM, Kleffmann T, Jack RW, Tagg JR. Uberolysin: a novel cyclic bacteriocin produced by Streptococcus uberis. Microbiology. 2007;153(Pt 5):1619-30.
-
(2007)
Microbiology
, vol.153
, pp. 1619-1630
-
-
Wirawan, R.E.1
Swanson, K.M.2
Kleffmann, T.3
Jack, R.W.4
Tagg, J.R.5
-
34
-
-
0142136187
-
Functional analysis of the gene cluster involved in production of the bacteriocin circularin A by Clostridium beijerinckii ATCC 25752
-
Kemperman R, Jonker M, Nauta A, Kuipers OP, Kok J. Functional analysis of the gene cluster involved in production of the bacteriocin circularin A by Clostridium beijerinckii ATCC 25752. Appl Environ Microbiol. 2003;69(10):5839-48.
-
(2003)
Appl Environ Microbiol
, vol.69
, Issue.10
, pp. 5839-5848
-
-
Kemperman, R.1
Jonker, M.2
Nauta, A.3
Kuipers, O.P.4
Kok, J.5
-
35
-
-
70350418770
-
The three-dimensional structure of carnocyclin A reveals that many circular bacteriocins share a common structural motif
-
Martin-Visscher LA, Gong X, Duszyk M, Vederas JC. The three-dimensional structure of carnocyclin A reveals that many circular bacteriocins share a common structural motif. J Biol Chem. 2009;284(42):28674-81.
-
(2009)
J Biol Chem
, vol.284
, Issue.42
, pp. 28674-28681
-
-
Martin-Visscher, L.A.1
Gong, X.2
Duszyk, M.3
Vederas, J.C.4
-
36
-
-
78449265553
-
Cloning and characterization of the gene cluster involved in the production of the circular bacteriocin carnocyclin A
-
van Belkum M, Martin-Visscher L, Vederas J: Cloning and characterization of the gene cluster involved in the production of the circular bacteriocin carnocyclin A. Probiotics Antimicrob Proteins 2010;2(4):218-225.
-
(2010)
Probiotics Antimicrob Proteins
, vol.2
, Issue.4
, pp. 218-225
-
-
van Belkum, M.1
Martin-Visscher, L.2
Vederas, J.3
-
37
-
-
0031962435
-
Analysis of the gene cluster involved in production and immunity of the peptide antibiotic AS-48 in Enterococcus faecalis
-
Martinez-Bueno M, Valdivia E, Galvez A, Coyette J, Maqueda M. Analysis of the gene cluster involved in production and immunity of the peptide antibiotic AS-48 in Enterococcus faecalis. Mol Microbiol. 1998;27(2):347-58.
-
(1998)
Mol Microbiol
, vol.27
, Issue.2
, pp. 347-358
-
-
Martinez-Bueno, M.1
Valdivia, E.2
Galvez, A.3
Coyette, J.4
Maqueda, M.5
-
38
-
-
0037315566
-
Characterization of a new operon, as-48EFGH, from the as-48 gene cluster involved in immunity to enterocin AS-48
-
Diaz M, Valdivia E, Martinez-Bueno M, Fernandez M, Soler-Gonzalez AS, Ramirez-Rodrigo H, et al. Characterization of a new operon, as-48EFGH, from the as-48 gene cluster involved in immunity to enterocin AS-48. Appl Environ Microbiol. 2003;69(2):1229-36.
-
(2003)
Appl Environ Microbiol
, vol.69
, Issue.2
, pp. 1229-1236
-
-
Diaz, M.1
Valdivia, E.2
Martinez-Bueno, M.3
Fernandez, M.4
Soler-Gonzalez, A.S.5
Ramirez-Rodrigo, H.6
-
39
-
-
0028894290
-
Competence for genetic transformation in Streptococcus pneumoniae: organization of a regulatory locus with homology to two lactococcin A secretion genes
-
Hui FM, Zhou L, Morrison DA. Competence for genetic transformation in Streptococcus pneumoniae: organization of a regulatory locus with homology to two lactococcin A secretion genes. Gene. 1995;153(1):25-31.
-
(1995)
Gene
, vol.153
, Issue.1
, pp. 25-31
-
-
Hui, F.M.1
Zhou, L.2
Morrison, D.A.3
-
40
-
-
0025956840
-
Genetic transformation in Streptococcus pneumoniae: nucleotide sequence analysis shows comA, a gene required for competence induction, to be a member of the bacterial ATP-dependent transport protein family
-
Hui FMMD. Genetic transformation in Streptococcus pneumoniae: nucleotide sequence analysis shows comA, a gene required for competence induction, to be a member of the bacterial ATP-dependent transport protein family. J Bacteriol. 1991;173(1):372-81.
-
(1991)
J Bacteriol
, vol.173
, Issue.1
, pp. 372-381
-
-
Hui, F.M.M.D.1
-
41
-
-
84883822252
-
Multicoloured greenbeards, bacteriocin diversity and the rock-paper-scissors game
-
Biernaskie JMGA, West SA. Multicoloured greenbeards, bacteriocin diversity and the rock-paper-scissors game. J Evol Biol. 2013;26:2081-94.
-
(2013)
J Evol Biol
, vol.26
, pp. 2081-2094
-
-
Biernaskie, J.M.G.A.1
West, S.A.2
-
42
-
-
84907960253
-
Dynamic changes in the Streptococcus pneumoniae transcriptome during transition from biofilm formation to invasive disease upon influenza A virus infection
-
Pettigrew MM, Marks LR, Kong Y, Gent JF, Roche-Hakansson H, Hakansson AP. Dynamic changes in the Streptococcus pneumoniae transcriptome during transition from biofilm formation to invasive disease upon influenza A virus infection. Infect Immun. 2014;82(11):4607-19.
-
(2014)
Infect Immun
, vol.82
, Issue.11
, pp. 4607-4619
-
-
Pettigrew, M.M.1
Marks, L.R.2
Kong, Y.3
Gent, J.F.4
Roche-Hakansson, H.5
Hakansson, A.P.6
-
43
-
-
79251544864
-
Rapid pneumococcal evolution in response to clinical interventions
-
Croucher NJ, Harris SR, Fraser C, Quail MA, Burton J, van der Linden M, et al. Rapid pneumococcal evolution in response to clinical interventions. Science. 2011;331:430-4.
-
(2011)
Science
, vol.331
, pp. 430-434
-
-
Croucher, N.J.1
Harris, S.R.2
Fraser, C.3
Quail, M.A.4
Burton, J.5
Linden, M.6
-
44
-
-
84869027021
-
The multidrug-resistant PMEN1 pneumococcus is a paradigm for genetic success
-
Wyres KL, Lambertsen LM, Croucher NJ, McGee L, von Gottberg A, Linares J, et al. The multidrug-resistant PMEN1 pneumococcus is a paradigm for genetic success. Genome Biol. 2012;13(11):R103.
-
(2012)
Genome Biol
, vol.13
, Issue.11
, pp. R103
-
-
Wyres, K.L.1
Lambertsen, L.M.2
Croucher, N.J.3
McGee, L.4
Gottberg, A.5
Linares, J.6
-
45
-
-
84880350266
-
Evidence of antimicrobial resistance-conferring genetic elements among pneumococci isolated prior to 1974
-
Wyres KL, van Tonder A, Lambertsen LM, Hakenbeck R, Parkhill J, Bentley SD, et al. Evidence of antimicrobial resistance-conferring genetic elements among pneumococci isolated prior to 1974. BMC Genomics. 2013;14:500.
-
(2013)
BMC Genomics
, vol.14
, pp. 500
-
-
Wyres, K.L.1
Tonder, A.2
Lambertsen, L.M.3
Hakenbeck, R.4
Parkhill, J.5
Bentley, S.D.6
-
46
-
-
84916890554
-
Defining the estimated core genome of bacterial populations using a Bayesian decision model
-
van Tonder A, Mistry S, Bray JE, Hill DMC, Cody AJ, Farmer CL, et al. Defining the estimated core genome of bacterial populations using a Bayesian decision model. PLoS Comp Biol. 2014;10(8):e1003788.
-
(2014)
PLoS Comp Biol
, vol.10
, Issue.8
, pp. e1003788
-
-
Tonder, A.1
Mistry, S.2
Bray, J.E.3
Hill, D.M.C.4
Cody, A.J.5
Farmer, C.L.6
-
47
-
-
84937845692
-
-
Accessed 15 November
-
http://www.ncbi.nlm.nih.gov/genbank . Accessed 15 November 2012.
-
(2012)
-
-
-
48
-
-
78650827616
-
BIGSdb: Scalable analysis of bacterial genome variation at the population level
-
Jolley KA, Maiden MC. BIGSdb: Scalable analysis of bacterial genome variation at the population level. BMC Bioinform. 2010;11:595.
-
(2010)
BMC Bioinform
, vol.11
, pp. 595
-
-
Jolley, K.A.1
Maiden, M.C.2
-
49
-
-
84894406777
-
-
Intelligent Systems for Molecular Biology meeting: 11-13 Jul 2010 Accessed 15 March
-
Ponstingl H, Ning Z: SMALT - a new mapper for DNA sequencing reads. In: Intelligent Systems for Molecular Biology meeting: 11-13 Jul 2010. https://www.sanger.ac.uk/resources/software/smalt/ . Accessed 15 March 2013.
-
(2013)
SMALT - a new mapper for DNA sequencing reads
-
-
Ponstingl, H.1
Ning, Z.2
-
50
-
-
77954506029
-
Gap5-editing the billion fragment sequence assembly
-
Bonfield JK, Whitwham A. Gap5-editing the billion fragment sequence assembly. Bioinformatics. 2010;26(14):1699-703.
-
(2010)
Bioinformatics
, vol.26
, Issue.14
, pp. 1699-1703
-
-
Bonfield, J.K.1
Whitwham, A.2
-
51
-
-
33644873699
-
ISfinder: the reference centre for bacterial insertion sequences
-
Siguier P, Perochon J, Lestrade L, Mahillon J, Chandler M. ISfinder: the reference centre for bacterial insertion sequences. Nucleic Acids Res. 2006;34 suppl 1:D32-6.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D32-D36
-
-
Siguier, P.1
Perochon, J.2
Lestrade, L.3
Mahillon, J.4
Chandler, M.5
-
52
-
-
84901417347
-
Prokka: rapid prokaryotic genome annotation
-
Seemann T. Prokka: rapid prokaryotic genome annotation. Bioinformatics. 2014;30(14):2068-9.
-
(2014)
Bioinformatics
, vol.30
, Issue.14
, pp. 2068-2069
-
-
Seemann, T.1
-
53
-
-
0033635022
-
Artemis: sequence visualization and annotation
-
Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, et al. Artemis: sequence visualization and annotation. Bioinformatics. 2000;16(10):944-5.
-
(2000)
Bioinformatics
, vol.16
, Issue.10
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.A.6
-
54
-
-
79956022134
-
RATT: Rapid Annotation Transfer Tool
-
Otto TD, Dillon GP, Degrave WS, Berriman M. RATT: Rapid Annotation Transfer Tool. Nucleic Acids Res. 2011;39(9):e57.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.9
, pp. e57
-
-
Otto, T.D.1
Dillon, G.P.2
Degrave, W.S.3
Berriman, M.4
-
55
-
-
84883572507
-
BAGEL3: Automated identification of genes encoding bacteriocins and (non-)bactericidal posttranslationally modified peptides
-
van Heel AJ, de Jong A, Montalban-Lopez M, Kok J, Kuipers OP. BAGEL3: Automated identification of genes encoding bacteriocins and (non-)bactericidal posttranslationally modified peptides. Nucleic Acids Res. 2013;41:W448-53. Web Server issue.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. W448-W453
-
-
Heel, A.J.1
Jong, A.2
Montalban-Lopez, M.3
Kok, J.4
Kuipers, O.P.5
-
56
-
-
77249117208
-
BACTIBASE second release: a database and tool platform for bacteriocin characterization
-
Hammami R, Zouhir A, Le Lay C, Ben Hamida J, Fliss I. BACTIBASE second release: a database and tool platform for bacteriocin characterization. BMC Microbiol. 2010;10:22.
-
(2010)
BMC Microbiol
, vol.10
, pp. 22
-
-
Hammami, R.1
Zouhir, A.2
Lay, C.3
Ben Hamida, J.4
Fliss, I.5
-
57
-
-
84937870941
-
-
Accessed 1 July
-
http://pubmlst.org . Accessed 1 July 2014.
-
(2014)
-
-
-
58
-
-
79957613599
-
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;28(10):2731-9.
-
(2011)
Mol Biol Evol
, vol.28
, Issue.10
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
59
-
-
0002051540
-
BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser. 1999;41:95-8.
-
(1999)
Nucleic Acids Symp Ser
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
60
-
-
77956193448
-
ProgressiveMauve: multiple genome alignment with gene gain, loss and rearrangement
-
Darling AE, Mau B, Perna NT. ProgressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One. 2010;5(6):e11147.
-
(2010)
PLoS One
, vol.5
, Issue.6
, pp. e11147
-
-
Darling, A.E.1
Mau, B.2
Perna, N.T.3
-
61
-
-
58049208278
-
DNAPlotter: circular and linear interactive genome visualization
-
Carver T, Thomson N, Bleasby A, Berriman M, Parkhill J. DNAPlotter: circular and linear interactive genome visualization. Bioinformatics. 2009;25(1):119-20.
-
(2009)
Bioinformatics
, vol.25
, Issue.1
, pp. 119-120
-
-
Carver, T.1
Thomson, N.2
Bleasby, A.3
Berriman, M.4
Parkhill, J.5
-
62
-
-
84937935835
-
-
Accessed 15 July
-
https://www.inkscape.org . Accessed 15 July 2014.
-
(2014)
-
-
|