The networks of human gut microbe-metabolite associations are different between health and irritable bowel syndrome

ISME Journal

Volumn 9, Issue 8, 2015, Pages 1899-1903

  Shankar, Vijay ^a   Homer, Daniel ^a   Rigsbee, Laura ^a   Khamis, Harry J ^b   Michail, Sonia ^a   Raymer, Michael ^b   Reo, Nicholas V ^a   Paliy, Oleg ^a  

^a WRIGHT STATE UNIVERSITY   (United States)

^b WRIGHT STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ABUNDANCE; BIOMARKER; FECAL COLIFORM; METABOLITE; METHANE; MICROBIAL ACTIVITY; NUCLEAR MAGNETIC RESONANCE;

BIOLOGICAL MARKER;

CASE CONTROL STUDY; CHEMISTRY; CHILD; FECES; FEMALE; HUMAN; IRRITABLE COLON; MALE; METABOLISM; MICROBIOLOGY; MICROFLORA;

BIOMARKERS; CASE-CONTROL STUDIES; CHILD; FECES; FEMALE; HUMANS; IRRITABLE BOWEL SYNDROME; MALE; MICROBIOTA;

EID: 84937739054     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2014.258     Document Type: Article

References (21)

1. th edn. Williams & Wilkins: Baltimore.
2. Bernalier-Donadille A. (2010). Fermentative metabolism by the human gut microbiota. Gastroenterol Clin Biol 34: S16-S22.
3. Chatterjee S, Park S, Low K, Kong Y, Pimentel M. (2007). The degree of breath methane production in IBS correlates with the severity of constipation. Am J Gastroenterol 102: 837-841.
4. David LA, Maurice CF, Carmody RN, Gootenberg DB, Button JE, Wolfe BE et al. (2014). Diet rapidly and reproducibly alters the human gut microbiome. Nature 505: 559-563.
5. Duboc H, Rainteau D, Rajca S, Humbert L, Farabos D, Maubert M et al. (2012). Increase in fecal primary bile acids and dysbiosis in patients with diarrhea-predominant irritable bowel syndrome. Neurogastroenterol Motil 24: 513-520.
6. Duncan SH, Barcenilla A, Stewart CS, Pryde SE, Flint HJ. (2002). Acetate utilization and butyryl coenzyme A (CoA):acetate-CoA transferase in butyrate-producing bacteria from the human large intestine. Appl Environ Microbiol 68: 5186-5190.
7. Ghoshal UC, Srivastava D, Verma A, Misra A. (2011). Slow transit constipation associated with excess methane production and its improvement following rifaximin therapy: a case report. J Neurogastroenterol Motil 17: 185-188.
8. Gorkiewicz G, Thallinger GG, Trajanoski S, Lackner S, Stocker G, Hinterleitner T et al. (2013). Alterations in the colonic microbiota in response to osmotic diarrhea. PLoS One 8: e55817.
9. Guilloteau P, Martin L, Eeckhaut V, Ducatelle R, Zabielski R, Van Immerseel F. (2010). From the gut to the peripheral tissues: the multiple effects of butyrate. Nutr Res Rev 23: 366-384.
10. Holdeman LV, Moore WEC. (1974). New genus, Coprococcus, twelve new species, and emended descriptions of four previously described species of bacteria from human feces. Int J Syst Evol Microbiol 24: 260-277.
11. Iakiviak M, Mackie RI, Cann IK. (2011). Functional analyses of multiple lichenin-degrading enzymes from the rumen bacterium Ruminococcus albus 8. Appl Environ Microbiol 77: 7541-7550.
12. Karasov WH, Carey HV. (2009). Metabolic teamwork between gut microbes and hosts. Microbe 4: 323-328.
13. Martens EC, Lowe EC, Chiang H, Pudlo NA, Wu M, McNulty NP et al. (2011). Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts. PLoS Biol 9: e1001221.
14. Quigley EM, Abdel-Hamid H, Barbara G, Bhatia SJ, Boeckxstaens G, De Giorgio R et al. (2012). A global perspective on irritable bowel syndrome: a consensus statement of the World Gastroenterology Organisation Summit Task Force on irritable bowel syndrome. J Clin Gastroenterol 46: 356-366.
15. Rigsbee L, Agans R, Shankar V, Kenche H, Khamis HJ, Michail S et al. (2012). Quantitative profiling of gut microbiota of children with diarrhea-predominant irritable bowel syndrome. Am J Gastroenterol 107: 1740-1751.
16. Rohlf FJ, Slice D. (1990). Extensions of the procrustes method for the optimal superimposition of landmarks. Syst Zool 39: 40-59.
17. Sekirov I, Russell SL, Antunes LC, Finlay BB. (2010). Gut microbiota in health and disease. Physiol Rev 90: 859-904.
18. Shankar V, Agans R, Holmes B, Raymer M, Paliy O. (2013). Do gut microbial communities differ in pediatric IBS and health? Gut Microbes 4: 347-352.
19. Steck N, Mueller K, Schemann M, Haller D. (2011). Bacterial proteases in IBD and IBS. Gut 61: 1610-1618.
20. Takahashi N, Yamada T. (2000). Pathways for amino acid metabolism by Prevotella intermedia and Prevotella nigrescens. Oral Microbiol Immunol 15: 96-102.
21. Watanabe Y, Nagai F, Morotomi M. (2012). Characterization of Phascolarctobacterium succinatutens sp. nov., an asaccharolytic, succinate-utilizing bacterium isolated from human feces. Appl Environ Microbiol 78: 511-518.