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Volumn 14, Issue 4, 2015, Pages 468-473

Impact of storage conditions on metabolite profiles of sputum samples from persons with cystic fibrosis

Author keywords

Cystic fibrosis; Metabolome; Sputum

Indexed keywords

PHENAZINE DERIVATIVE;

EID: 84937633740     PISSN: 15691993     EISSN: 18735010     Source Type: Journal    
DOI: 10.1016/j.jcf.2015.02.004     Document Type: Article
Times cited : (10)

References (29)
  • 3
    • 84866054774 scopus 로고    scopus 로고
    • Long-term cultivation-independent microbial diversity analysis demonstrates that bacterial communities infecting the adult cystic fibrosis lung show stability and resilience
    • Stressmann F.A., Rogers G.B., van der Gast C.J., Marsh P., Vermeer L.S., Carroll M.P., et al. Long-term cultivation-independent microbial diversity analysis demonstrates that bacterial communities infecting the adult cystic fibrosis lung show stability and resilience. Thorax 2012, 67:867-873.
    • (2012) Thorax , vol.67 , pp. 867-873
    • Stressmann, F.A.1    Rogers, G.B.2    van der Gast, C.J.3    Marsh, P.4    Vermeer, L.S.5    Carroll, M.P.6
  • 4
    • 84911888639 scopus 로고    scopus 로고
    • Directly sampling the lung of a young child with cystic fibrosis reveals diverse microbiota
    • Brown P.S., Pope C.E., Marsh R.L., Qin X., McNamara S., Gibson R., et al. Directly sampling the lung of a young child with cystic fibrosis reveals diverse microbiota. Ann Am Thorac Soc 2014, 11:1049-1055.
    • (2014) Ann Am Thorac Soc , vol.11 , pp. 1049-1055
    • Brown, P.S.1    Pope, C.E.2    Marsh, R.L.3    Qin, X.4    McNamara, S.5    Gibson, R.6
  • 5
    • 84924981899 scopus 로고    scopus 로고
    • The microbiome in pediatric cystic fibrosis patients: the role of shared environment suggests a window of intervention
    • Hampton T.H., Green D.M., Cutting G.R., Morrison H.G., Sogin M.L., Gifford A.H., et al. The microbiome in pediatric cystic fibrosis patients: the role of shared environment suggests a window of intervention. Microbiome 2014, 2:14.
    • (2014) Microbiome , vol.2 , pp. 14
    • Hampton, T.H.1    Green, D.M.2    Cutting, G.R.3    Morrison, H.G.4    Sogin, M.L.5    Gifford, A.H.6
  • 6
    • 84901801222 scopus 로고    scopus 로고
    • Unique microbial communities persist in individual cystic fibrosis patients throughout a clinical exacerbation
    • Price K.E., Hampton T.H., Gifford A.H., Dolben E.L., Hogan D.A., Morrison H.G., et al. Unique microbial communities persist in individual cystic fibrosis patients throughout a clinical exacerbation. Microbiome 2013, 1:27.
    • (2013) Microbiome , vol.1 , pp. 27
    • Price, K.E.1    Hampton, T.H.2    Gifford, A.H.3    Dolben, E.L.4    Hogan, D.A.5    Morrison, H.G.6
  • 7
    • 84896700196 scopus 로고    scopus 로고
    • Is the improvement of CF patients, hospitalized for pulmonary exacerbation, correlated to a decrease in bacterial load?
    • Deschaght P., Schelstraete P., Van Simaey L., Vanderkercken M., Raman A., Mahieu L., et al. Is the improvement of CF patients, hospitalized for pulmonary exacerbation, correlated to a decrease in bacterial load?. PLoS One 2013, 8:e79010.
    • (2013) PLoS One , vol.8 , pp. e79010
    • Deschaght, P.1    Schelstraete, P.2    Van Simaey, L.3    Vanderkercken, M.4    Raman, A.5    Mahieu, L.6
  • 8
    • 84866841728 scopus 로고    scopus 로고
    • The adult cystic fibrosis airway microbiota is stable over time and infection type, and highly resilient to antibiotic treatment of exacerbations
    • Fodor A.A., Klem E.R., Gilpin D.F., Elborn J.S., Boucher R.C., Tunney M.M., et al. The adult cystic fibrosis airway microbiota is stable over time and infection type, and highly resilient to antibiotic treatment of exacerbations. PLoS One 2012, 7:e45001.
    • (2012) PLoS One , vol.7 , pp. e45001
    • Fodor, A.A.1    Klem, E.R.2    Gilpin, D.F.3    Elborn, J.S.4    Boucher, R.C.5    Tunney, M.M.6
  • 9
    • 84893104590 scopus 로고    scopus 로고
    • Microbiota and metabolite profiling reveal specific alterations in bacterial community structure and environment in the cystic fibrosis airway during exacerbation
    • Twomey K.B., Alston M., An S.Q., O'Connell O.J., McCarthy Y., Swarbreck D., et al. Microbiota and metabolite profiling reveal specific alterations in bacterial community structure and environment in the cystic fibrosis airway during exacerbation. PLoS One 2013, 8:e82432.
    • (2013) PLoS One , vol.8 , pp. e82432
    • Twomey, K.B.1    Alston, M.2    An, S.Q.3    O'Connell, O.J.4    McCarthy, Y.5    Swarbreck, D.6
  • 11
    • 84863229459 scopus 로고    scopus 로고
    • Impact of enhanced Staphylococcus DNA extraction on microbial community measures in cystic fibrosis sputum
    • Zhao J., Carmody L.A., Kalikin L.M., Li J., Petrosino J.F., Schloss P.D., et al. Impact of enhanced Staphylococcus DNA extraction on microbial community measures in cystic fibrosis sputum. PLoS One 2012, 7:e33127.
    • (2012) PLoS One , vol.7 , pp. e33127
    • Zhao, J.1    Carmody, L.A.2    Kalikin, L.M.3    Li, J.4    Petrosino, J.F.5    Schloss, P.D.6
  • 12
    • 84920644670 scopus 로고    scopus 로고
    • Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
    • Salter S.J., Cox M.J., Turek E.M., Calus S.T., Cookson W.O., Moffatt M.F., et al. Reagent and laboratory contamination can critically impact sequence-based microbiome analyses. BMC Biol 2014, 12:87.
    • (2014) BMC Biol , vol.12 , pp. 87
    • Salter, S.J.1    Cox, M.J.2    Turek, E.M.3    Calus, S.T.4    Cookson, W.O.5    Moffatt, M.F.6
  • 13
    • 84875466988 scopus 로고    scopus 로고
    • Toward implementation of quorum sensing autoinducers as biomarkers for infectious disease states
    • Struss A.K., Nunes A., Waalen J., Lowery C.A., Pullanikat P., Denery J.R., et al. Toward implementation of quorum sensing autoinducers as biomarkers for infectious disease states. Anal Chem 2013, 85:3355-3362.
    • (2013) Anal Chem , vol.85 , pp. 3355-3362
    • Struss, A.K.1    Nunes, A.2    Waalen, J.3    Lowery, C.A.4    Pullanikat, P.5    Denery, J.R.6
  • 14
    • 84861712025 scopus 로고    scopus 로고
    • Metabolomic profiling of regulatory lipid mediators in sputum from adult cystic fibrosis patients
    • Yang J., Eiserich J.P., Cross C.E., Morrissey B.M., Hammock B.D. Metabolomic profiling of regulatory lipid mediators in sputum from adult cystic fibrosis patients. Free Radic Biol Med 2012, 53:160-171.
    • (2012) Free Radic Biol Med , vol.53 , pp. 160-171
    • Yang, J.1    Eiserich, J.P.2    Cross, C.E.3    Morrissey, B.M.4    Hammock, B.D.5
  • 15
    • 84887989964 scopus 로고    scopus 로고
    • A relationship between growth behaviour and cystic fibrosis patient lung function identified in a metabolomic investigation
    • Kozlowska J., Rivett D.W., Vermeer L.S., Carroll M.P., Bruce K.D., Mason A.J., et al. A relationship between growth behaviour and cystic fibrosis patient lung function identified in a metabolomic investigation. Metabolomics 2013, 9.
    • (2013) Metabolomics , vol.9
    • Kozlowska, J.1    Rivett, D.W.2    Vermeer, L.S.3    Carroll, M.P.4    Bruce, K.D.5    Mason, A.J.6
  • 16
    • 77957261641 scopus 로고    scopus 로고
    • Metabolomic profiling reveals biochemical pathways and biomarkers associated with pathogenesis in cystic fibrosis cells
    • Wetmore D.R., Joseloff E., Pilewski J., Lee D.P., Lawton K.A., Mitchell M.W., et al. Metabolomic profiling reveals biochemical pathways and biomarkers associated with pathogenesis in cystic fibrosis cells. J Biol Chem 2010, 285:30516-30522.
    • (2010) J Biol Chem , vol.285 , pp. 30516-30522
    • Wetmore, D.R.1    Joseloff, E.2    Pilewski, J.3    Lee, D.P.4    Lawton, K.A.5    Mitchell, M.W.6
  • 17
    • 32444451016 scopus 로고    scopus 로고
    • Solvent-dependent metabolite distribution, clustering, and protein extraction for serum profiling with mass spectrometry
    • Want E.J., O'Maille G., Smith C.A., Brandon T.R., Uritboonthai W., Qin C., et al. Solvent-dependent metabolite distribution, clustering, and protein extraction for serum profiling with mass spectrometry. Anal Chem 2006, 78:743-752.
    • (2006) Anal Chem , vol.78 , pp. 743-752
    • Want, E.J.1    O'Maille, G.2    Smith, C.A.3    Brandon, T.R.4    Uritboonthai, W.5    Qin, C.6
  • 18
    • 33750024279 scopus 로고    scopus 로고
    • Identifying decomposition products in extracts of cellular metabolites
    • Kimball E., Rabinowitz J.D. Identifying decomposition products in extracts of cellular metabolites. Anal Biochem 2006, 358:273-280.
    • (2006) Anal Biochem , vol.358 , pp. 273-280
    • Kimball, E.1    Rabinowitz, J.D.2
  • 19
    • 64649089947 scopus 로고    scopus 로고
    • Cross-platform comparison of methods for quantitative metabolomics of primary metabolism
    • Buscher J.M., Czernik D., Ewald J.C., Sauer U., Zamboni N. Cross-platform comparison of methods for quantitative metabolomics of primary metabolism. Anal Chem 2009, 81:2135-2143.
    • (2009) Anal Chem , vol.81 , pp. 2135-2143
    • Buscher, J.M.1    Czernik, D.2    Ewald, J.C.3    Sauer, U.4    Zamboni, N.5
  • 20
    • 84884251320 scopus 로고    scopus 로고
    • Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform
    • Kozich J.J., Westcott S.L., Baxter N.T., Highlander S.K., Schloss P.D. Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform. Appl Environ Microbiol 2013, 79:5112-5120.
    • (2013) Appl Environ Microbiol , vol.79 , pp. 5112-5120
    • Kozich, J.J.1    Westcott, S.L.2    Baxter, N.T.3    Highlander, S.K.4    Schloss, P.D.5
  • 21
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss P.D., Westcott S.L., Ryabin T., Hall J.R., Hartmann M., Hollister E.B., et al. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 2009, 75:7537-7541.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3    Hall, J.R.4    Hartmann, M.5    Hollister, E.B.6
  • 22
    • 77954772536 scopus 로고    scopus 로고
    • MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
    • Pluskal T., Castillo S., Villar-Briones A., Oresic M. MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data. BMC Bioinforma. 2010, 11:395.
    • (2010) BMC Bioinforma. , vol.11 , pp. 395
    • Pluskal, T.1    Castillo, S.2    Villar-Briones, A.3    Oresic, M.4
  • 24
    • 84870515120 scopus 로고    scopus 로고
    • Phenazine content in the cystic fibrosis respiratory tract negatively correlates with lung function and microbial complexity
    • Hunter R.C., Klepac-Ceraj V., Lorenzi M.M., Grotzinger H., Martin T.R., Newman D.K. Phenazine content in the cystic fibrosis respiratory tract negatively correlates with lung function and microbial complexity. Am J Respir Cell Mol Biol 2012, 47:738-745.
    • (2012) Am J Respir Cell Mol Biol , vol.47 , pp. 738-745
    • Hunter, R.C.1    Klepac-Ceraj, V.2    Lorenzi, M.M.3    Grotzinger, H.4    Martin, T.R.5    Newman, D.K.6
  • 25
    • 84863513734 scopus 로고    scopus 로고
    • Omics approaches in cystic fibrosis research: a focus on oxylipin profiling in airway secretions
    • Eiserich J.P., Yang J., Morrissey B.M., Hammock B.D., Cross C.E. Omics approaches in cystic fibrosis research: a focus on oxylipin profiling in airway secretions. Ann N Y Acad Sci 2012, 1259:1-9.
    • (2012) Ann N Y Acad Sci , vol.1259 , pp. 1-9
    • Eiserich, J.P.1    Yang, J.2    Morrissey, B.M.3    Hammock, B.D.4    Cross, C.E.5
  • 26
    • 84901248574 scopus 로고    scopus 로고
    • Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate Jactive pH neutral 2,3-butanedione fermentation
    • Whiteson K.L., Meinardi S., Lim Y.W., Schmieder R., Maughan H., Quinn R., et al. Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate Jactive pH neutral 2,3-butanedione fermentation. ISME J 2014, 8:1247-1258.
    • (2014) ISME J , vol.8 , pp. 1247-1258
    • Whiteson, K.L.1    Meinardi, S.2    Lim, Y.W.3    Schmieder, R.4    Maughan, H.5    Quinn, R.6
  • 27
    • 80053490333 scopus 로고    scopus 로고
    • Effect of sample storage conditions on culture-independent bacterial community measures in cystic fibrosis sputum specimens
    • Zhao J., Li J., Schloss P.D., Kalikin L.M., Raymond T.A., Petrosino J.F., et al. Effect of sample storage conditions on culture-independent bacterial community measures in cystic fibrosis sputum specimens. J Clin Microbiol 2011, 49:3717-3718.
    • (2011) J Clin Microbiol , vol.49 , pp. 3717-3718
    • Zhao, J.1    Li, J.2    Schloss, P.D.3    Kalikin, L.M.4    Raymond, T.A.5    Petrosino, J.F.6
  • 28
    • 33644862308 scopus 로고    scopus 로고
    • 4-quinolone signalling in Pseudomonas aeruginosa: old molecules, new perspectives
    • Diggle S.P., Cornelis P., Williams P., Camara M. 4-quinolone signalling in Pseudomonas aeruginosa: old molecules, new perspectives. Int J Med Microbiol 2006, 296:83-91.
    • (2006) Int J Med Microbiol , vol.296 , pp. 83-91
    • Diggle, S.P.1    Cornelis, P.2    Williams, P.3    Camara, M.4
  • 29
    • 0034641962 scopus 로고    scopus 로고
    • Quorum-sensing signals indicate that cystic fibrosis lungs are infected with bacterial biofilms
    • Singh P.K., Schaefer A.L., Parsek M.R., Moninger T.O., Welsh M.J., Greenberg E.P. Quorum-sensing signals indicate that cystic fibrosis lungs are infected with bacterial biofilms. Nature 2000, 407:762-764.
    • (2000) Nature , vol.407 , pp. 762-764
    • Singh, P.K.1    Schaefer, A.L.2    Parsek, M.R.3    Moninger, T.O.4    Welsh, M.J.5    Greenberg, E.P.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.