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Volumn 569, Issue 1, 2015, Pages 21-26

Comparisons of isomiR patterns and classification performance using the rank-based MANOVA and 10-fold cross-validation

Author keywords

Classification performance; Differential expression; IsomiR patterns; MiRNA sequencing research

Indexed keywords

MICRORNA; MICRORNA 10B; MICRORNA 10B 5P; MICRORNA 145; MICRORNA 145 5P; MICRORNA 182; MICRORNA 182 5P; MICRORNA 183 5P; MICRORNA 21; MICRORNA 21 5P; MICRORNA 375; MICRORNA 451 5P; RNA ISOFORM; UNCLASSIFIED DRUG;

EID: 84937522118     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2014.11.026     Document Type: Article
Times cited : (31)

References (25)
  • 1
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders S., Huber W. Differential expression analysis for sequence count data. Genome Biol. 2010, 11:R106.
    • (2010) Genome Biol. , vol.11 , pp. R106
    • Anders, S.1    Huber, W.2
  • 2
    • 84937523542 scopus 로고    scopus 로고
    • Regulation of miRNA processing and miRNA mediated gene repression in cancer
    • Bajan S., Hutvagner G. Regulation of miRNA processing and miRNA mediated gene repression in cancer. Microrna 2014, 3:10-17.
    • (2014) Microrna , vol.3 , pp. 10-17
    • Bajan, S.1    Hutvagner, G.2
  • 3
    • 84883651731 scopus 로고    scopus 로고
    • Beta cell 5'-shifted isomiRs are candidate regulatory hubs in type 2 diabetes
    • Baran-Gale J., Fannin E.E., Kurtz C.L., Sethupathy P. Beta cell 5'-shifted isomiRs are candidate regulatory hubs in type 2 diabetes. PLoS One 2013, 8:e73240.
    • (2013) PLoS One , vol.8
    • Baran-Gale, J.1    Fannin, E.E.2    Kurtz, C.L.3    Sethupathy, P.4
  • 9
    • 33846689706 scopus 로고    scopus 로고
    • Using GOstats to test gene lists for GO term association
    • Falcon S., Gentleman R. Using GOstats to test gene lists for GO term association. Bioinformatics 2007, 23:257-258.
    • (2007) Bioinformatics , vol.23 , pp. 257-258
    • Falcon, S.1    Gentleman, R.2
  • 10
    • 77957312307 scopus 로고    scopus 로고
    • Dynamic isomiR regulation in Drosophila development
    • Fernandez-Valverde S.L., Taft R.J., Mattick J.S. Dynamic isomiR regulation in Drosophila development. RNA 2010, 16:1881-1888.
    • (2010) RNA , vol.16 , pp. 1881-1888
    • Fernandez-Valverde, S.L.1    Taft, R.J.2    Mattick, J.S.3
  • 11
    • 80054709141 scopus 로고    scopus 로고
    • MiRNA biomarkers in breast cancer detection and management
    • Fu S.W., Chen L., Man Y.G. miRNA biomarkers in breast cancer detection and management. J. Cancer 2011, 2:116-122.
    • (2011) J. Cancer , vol.2 , pp. 116-122
    • Fu, S.W.1    Chen, L.2    Man, Y.G.3
  • 13
    • 84899895387 scopus 로고    scopus 로고
    • A challenge for miRNA: multiple isomiRs in miRNAomics
    • Guo L., Chen F. A challenge for miRNA: multiple isomiRs in miRNAomics. Gene 2014, 544:1-7.
    • (2014) Gene , vol.544 , pp. 1-7
    • Guo, L.1    Chen, F.2
  • 14
    • 79959386594 scopus 로고    scopus 로고
    • A comprehensive survey of miRNA repertoire and 3' addition events in the placentas of patients with pre-eclampsia from high-throughput sequencing
    • Guo L., Yang Q., Lu J., Li H., Ge Q., Gu W., Bai Y., Lu Z. A comprehensive survey of miRNA repertoire and 3' addition events in the placentas of patients with pre-eclampsia from high-throughput sequencing. PLoS One 2011, 6:e21072.
    • (2011) PLoS One , vol.6
    • Guo, L.1    Yang, Q.2    Lu, J.3    Li, H.4    Ge, Q.5    Gu, W.6    Bai, Y.7    Lu, Z.8
  • 15
    • 84864280682 scopus 로고    scopus 로고
    • Consistent isomiR expression patterns and 3' addition events in miRNA gene clusters and families implicate functional and evolutionary relationships
    • Guo L., Li H., Liang T., Lu J., Yang Q., Ge Q., Lu Z. Consistent isomiR expression patterns and 3' addition events in miRNA gene clusters and families implicate functional and evolutionary relationships. Mol. Biol. Rep. 2012, 39:6699-6706.
    • (2012) Mol. Biol. Rep. , vol.39 , pp. 6699-6706
    • Guo, L.1    Li, H.2    Liang, T.3    Lu, J.4    Yang, Q.5    Ge, Q.6    Lu, Z.7
  • 16
    • 84878412073 scopus 로고    scopus 로고
    • Genome-wide screen for aberrantly expressed miRNAs reveals miRNA profile signature in breast cancer
    • Guo L., Zhao Y., Yang S., Cai M., Wu Q., Chen F. Genome-wide screen for aberrantly expressed miRNAs reveals miRNA profile signature in breast cancer. Mol. Biol. Rep. 2013, 40:2175-2186.
    • (2013) Mol. Biol. Rep. , vol.40 , pp. 2175-2186
    • Guo, L.1    Zhao, Y.2    Yang, S.3    Cai, M.4    Wu, Q.5    Chen, F.6
  • 17
    • 84887233887 scopus 로고    scopus 로고
    • Selected isomiR expression profiles via arm switching?
    • Guo L., Zhang H., Zhao Y., Yang S., Chen F. Selected isomiR expression profiles via arm switching?. Gene 2014, 533:149-155.
    • (2014) Gene , vol.533 , pp. 149-155
    • Guo, L.1    Zhang, H.2    Zhao, Y.3    Yang, S.4    Chen, F.5
  • 18
    • 77955298482 scopus 로고    scopus 로고
    • BaySeq: empirical Bayesian methods for identifying differential expression in sequence count data
    • Hardcastle T.J., Kelly K.A. baySeq: empirical Bayesian methods for identifying differential expression in sequence count data. BMC Bioinforma. 2010, 11:422.
    • (2010) BMC Bioinforma. , vol.11 , pp. 422
    • Hardcastle, T.J.1    Kelly, K.A.2
  • 20
    • 84862262444 scopus 로고    scopus 로고
    • MiRNA arm selection and isomiR distribution in gastric cancer
    • Li S.C., Liao Y.L., Ho M.R., Tsai K.W., Lai C.H., Lin W.C. miRNA arm selection and isomiR distribution in gastric cancer. BMC Genomics 2012, 13(Suppl. 1):S13.
    • (2012) BMC Genomics , vol.13 , pp. S13
    • Li, S.C.1    Liao, Y.L.2    Ho, M.R.3    Tsai, K.W.4    Lai, C.H.5    Lin, W.C.6
  • 21
    • 84877261416 scopus 로고    scopus 로고
    • MicroRNA 3' end nucleotide modification patterns and arm selection preference in liver tissues
    • Li S.C., Tsai K.W., Pan H.W., Jeng Y.M., Ho M.R., Li W.H. MicroRNA 3' end nucleotide modification patterns and arm selection preference in liver tissues. BMC Syst. Biol. 2012, 6(Suppl. 2):S14.
    • (2012) BMC Syst. Biol. , vol.6 , pp. S14
    • Li, S.C.1    Tsai, K.W.2    Pan, H.W.3    Jeng, Y.M.4    Ho, M.R.5    Li, W.H.6
  • 22
    • 50649089207 scopus 로고    scopus 로고
    • RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
    • Marioni J.C., Mason C.E., Mane S.M., Stephens M., Gilad Y. RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res. 2008, 18:1509-1517.
    • (2008) Genome Res. , vol.18 , pp. 1509-1517
    • Marioni, J.C.1    Mason, C.E.2    Mane, S.M.3    Stephens, M.4    Gilad, Y.5
  • 23
    • 84858041341 scopus 로고    scopus 로고
    • Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
    • McCarthy D.J., Chen Y., Smyth G.K. Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation. Nucleic Acids Res. 2012, 40:4288-4297.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 4288-4297
    • McCarthy, D.J.1    Chen, Y.2    Smyth, G.K.3
  • 24
    • 84867736206 scopus 로고    scopus 로고
    • IsomiRs - the overlooked repertoire in the dynamic microRNAome
    • Neilsen C.T., Goodall G.J., Bracken C.P. IsomiRs - the overlooked repertoire in the dynamic microRNAome. Trends Genet. 2012, 28:544-549.
    • (2012) Trends Genet. , vol.28 , pp. 544-549
    • Neilsen, C.T.1    Goodall, G.J.2    Bracken, C.P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.