메뉴 건너뛰기




Volumn 4, Issue JUNE 2015, 2015, Pages 1-11

H2A histone-fold and DNA elements in nucleosome activate SWR1-mediated H2A.Z replacement in budding yeast

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE H2A; PLASMID VECTOR; SWR1 PROTEIN; UNCLASSIFIED DRUG; ADENOSINE TRIPHOSPHATASE; CHROMATIN; DNA; HISTONE; NUCLEOSOME; PROTEIN BINDING; SACCHAROMYCES CEREVISIAE PROTEIN; SWR1 PROTEIN, S CEREVISIAE;

EID: 84937411433     PISSN: None     EISSN: 2050084X     Source Type: Journal    
DOI: 10.7554/elife.06845     Document Type: Article
Times cited : (45)

References (33)
  • 1
    • 0035725036 scopus 로고    scopus 로고
    • H2A.Z is required for global chromatin integrity and for recruitment of RNA polymerase II under specific conditions
    • Adam M, Robert F, Larochelle M, Gaudreau L. 2001 H2A.Z is required for global chromatin integrity and for recruitment of RNA polymerase II under specific conditions. Molecular and Cellular Biology 21:6270–6279. doi:10.1128/MCB.21.18.6270-6279.2001
    • (2001) Molecular and Cellular Biology , vol.21 , pp. 6270-6279
    • Adam, M.1    Robert, F.2    Larochelle, M.3    Gaudreau, L.4
  • 2
    • 34047111213 scopus 로고    scopus 로고
    • Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome
    • Albert I, Mavrich TN, Tomsho LP, Qi J, Zanton SJ, Schuster SC, Pugh BF. 2007 Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome. Nature 446:572–576. doi: 10.1038/nature05632
    • (2007) Nature , vol.446 , pp. 572-576
    • Albert, I.1    Mavrich, T.N.2    Tomsho, L.P.3    Qi, J.4    Zanton, S.J.5    Schuster, S.C.6    Pugh, B.F.7
  • 4
    • 84902168468 scopus 로고    scopus 로고
    • Regulating the chromatin landscape: Structural and mechanistic perspectives
    • Bartholomew B. 2014 Regulating the chromatin landscape: structural and mechanistic perspectives. Annual Review of Biochemistry 83:671–696. doi: 10.1146/annurev-biochem-051810-093157
    • (2014) Annual Review of Biochemistry , vol.83 , pp. 671-696
    • Bartholomew, B.1
  • 6
    • 67650725820 scopus 로고    scopus 로고
    • The biology of chromatin remodeling complexes
    • Clapier CR, Cairns BR. 2009 The biology of chromatin remodeling complexes. Annual Review of Biochemistry 78: 273–304. doi: 10.1146/annurev.biochem.77.062706.153223
    • (2009) Annual Review of Biochemistry , vol.78 , pp. 273-304
    • Clapier, C.R.1    Cairns, B.R.2
  • 7
    • 0033578004 scopus 로고    scopus 로고
    • Regions of variant histone His2AvD required for Drosophila development
    • Clarkson MJ, Wells JR, Gibson F, Saint R, Tremethick DJ. 1999 Regions of variant histone His2AvD required for Drosophila development. Nature 399:694–697. doi:10.1038/21436
    • (1999) Nature , vol.399 , pp. 694-697
    • Clarkson, M.J.1    Wells, J.R.2    Gibson, F.3    Saint, R.4    Tremethick, D.J.5
  • 8
    • 36849004886 scopus 로고    scopus 로고
    • Domain architecture of the catalytic subunit in the ISW2-nucleosome complex
    • Dang W, Bartholomew B. 2007 Domain architecture of the catalytic subunit in the ISW2-nucleosome complex. Molecular and Cellular Biology 27:8306–8317. doi:10.1128/MCB.01351-07
    • (2007) Molecular and Cellular Biology , vol.27 , pp. 8306-8317
    • Dang, W.1    Bartholomew, B.2
  • 10
    • 0033603238 scopus 로고    scopus 로고
    • ATP-dependent histone octamer sliding mediated by the chromatin remodeling complex NURF
    • Hamiche A, Sandaltzopoulos R, Gdula DA, Wu C. 1999 ATP-dependent histone octamer sliding mediated by the chromatin remodeling complex NURF. Cell 97:833–842. doi:10.1016/S0092-8674(00)80796-5
    • (1999) Cell , vol.97 , pp. 833-842
    • Hamiche, A.1    Sandaltzopoulos, R.2    Gdula, D.A.3    Wu, C.4
  • 11
    • 0028943705 scopus 로고
    • A new class of histone H2A mutations in Saccharomyces cerevisiae causes specific transcriptional defects in vivo
    • Hirschhorn JN, Bortvin AL, Ricupero-Hovasse SL, Winston F. 1995 A new class of histone H2A mutations in Saccharomyces cerevisiae causes specific transcriptional defects in vivo. Molecular and Cellular Biology 15: 1999–2009
    • (1995) Molecular and Cellular Biology , vol.15 , pp. 1999-2009
    • Hirschhorn, J.N.1    Bortvin, A.L.2    Ricupero-Hovasse, S.L.3    Winston, F.4
  • 13
    • 0041668053 scopus 로고    scopus 로고
    • In vivo protein-protein and protein-DNA crosslinking for genomewide binding microarray
    • Kurdistani SK, Grunstein M. 2003 In vivo protein-protein and protein-DNA crosslinking for genomewide binding microarray. Methods 31:90–95. doi: 10.1016/S1046-2023(03)00092-6
    • (2003) Methods , vol.31 , pp. 90-95
    • Kurdistani, S.K.1    Grunstein, M.2
  • 14
    • 0032512794 scopus 로고    scopus 로고
    • New DNA sequence rules for high affinity binding to histone octamer and sequencedirected nucleosome positioning
    • Lowary PT, Widom J. 1998 New DNA sequence rules for high affinity binding to histone octamer and sequencedirected nucleosome positioning. Journal of Molecular Biology 276:19–42. doi: 10.1006/jmbi.1997.1494
    • (1998) Journal of Molecular Biology , vol.276 , pp. 19-42
    • Lowary, P.T.1    Widom, J.2
  • 15
    • 0031587289 scopus 로고    scopus 로고
    • Characterization of nucleosome core particles containing histone proteins made in bacteria
    • Luger K, Rechsteiner TJ, Flaus AJ, Waye MM, Richmond TJ. 1997 Characterization of nucleosome core particles containing histone proteins made in bacteria. Journal of Molecular Biology 272:301–311. doi: 10.1006/jmbi.1997.1235
    • (1997) Journal of Molecular Biology , vol.272 , pp. 301-311
    • Luger, K.1    Rechsteiner, T.J.2    Flaus, A.J.3    Waye, M.M.4    Richmond, T.J.5
  • 16
    • 0033289822 scopus 로고    scopus 로고
    • Expression and purification of recombinant histones and nucleosome reconstitution
    • Luger K, Rechsteiner TJ, Richmond TJ. 1999 Expression and purification of recombinant histones and nucleosome reconstitution. Methods in Molecular Biology 119:1–16. doi:10.1385/1-59259-681-9:1
    • (1999) Methods in Molecular Biology , vol.119 , pp. 1-16
    • Luger, K.1    Rechsteiner, T.J.2    Richmond, T.J.3
  • 17
    • 78751536862 scopus 로고    scopus 로고
    • Stepwise histone replacement by SWR1 requires dual activation with histone H2A.Z and canonical nucleosome
    • Luk E, Ranjan A, Fitzgerald PC, Mizuguchi G, Huang Y, Wei D, Wu C. 2010 Stepwise histone replacement by SWR1 requires dual activation with histone H2A.Z and canonical nucleosome. Cell 143:725–736. doi: 10.1016/j.cell.2010.10.019
    • (2010) Cell , vol.143 , pp. 725-736
    • Luk, E.1    Ranjan, A.2    Fitzgerald, P.C.3    Mizuguchi, G.4    Huang, Y.5    Wei, D.6    Wu, C.7
  • 19
    • 0348184963 scopus 로고    scopus 로고
    • ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex
    • Mizuguchi G, Shen X, Landry J, Wu WH, Sen S, Wu C. 2004 ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. Science 303:343–348. doi: 10.1126/science.1090701
    • (2004) Science , vol.303 , pp. 343-348
    • Mizuguchi, G.1    Shen, X.2    Landry, J.3    Wu, W.H.4    Sen, S.5    Wu, C.6
  • 21
    • 84884214357 scopus 로고    scopus 로고
    • Nucleosomefree region dominates histone acetylation in targeting SWR1 to promoters for H2A.Z replacement
    • Ranjan A, Mizuguchi G, Fitzgerald PC, Wei D, Wang F, Huang Y, Luk E, Woodcock CL, Wu C. 2013 Nucleosomefree region dominates histone acetylation in targeting SWR1 to promoters for H2A.Z replacement. Cell 154: 1232–1245. doi:10.1016/j.cell.2013.08.005
    • (2013) Cell , vol.154 , pp. 1232-1245
    • Ranjan, A.1    Mizuguchi, G.2    Fitzgerald, P.C.3    Wei, D.4    Wang, F.5    Huang, Y.6    Luk, E.7    Woodcock, C.L.8    Wu, C.9
  • 22
    • 84923596623 scopus 로고    scopus 로고
    • Subnucleosomal structures and nucleosome asymmetry across a genome
    • Rhee HS, Bataille AR, Zhang L, Pugh BF. 2014 Subnucleosomal structures and nucleosome asymmetry across a genome. Cell 159:1377–1388. doi:10.1016/j.cell.2014.10.054
    • (2014) Cell , vol.159 , pp. 1377-1388
    • Rhee, H.S.1    Bataille, A.R.2    Zhang, L.3    Pugh, B.F.4
  • 23
    • 0034721645 scopus 로고    scopus 로고
    • Histone H2A.Z regulats transcription and is partially redundant with nucleosome remodeling complexes
    • Santisteban MS, Kalashnikova T, Smith MM. 2000 Histone H2A.Z regulats transcription and is partially redundant with nucleosome remodeling complexes. Cell 103:411–422. doi: 10.1016/S0092-8674(00)00133-1
    • (2000) Cell , vol.103 , pp. 411-422
    • Santisteban, M.S.1    Kalashnikova, T.2    Smith, M.M.3
  • 24
    • 4544266390 scopus 로고    scopus 로고
    • Spatial contacts and nucleosome step Movements Induced by the Nurf chromatin remodeling complex
    • Schwanbeck R, Xiao H, Wu C. 2004 Spatial contacts and nucleosome step Movements Induced by the Nurf chromatin remodeling complex. The Journal of Biological Chemistry 279:39933–39941. doi: 10.1074/jbc.M406060200
    • (2004) The Journal of Biological Chemistry , vol.279 , pp. 39933-39941
    • Schwanbeck, R.1    Xiao, H.2    Wu, C.3
  • 25
    • 0034601464 scopus 로고    scopus 로고
    • A chromatin remodelling complex involved in transcription and DNA processing
    • Shen X, Mizuguchi G, Hamiche A, Wu C. 2000 A chromatin remodelling complex involved in transcription and DNA processing. Nature 406:541–544. doi:10.1038/35020123
    • (2000) Nature , vol.406 , pp. 541-544
    • Shen, X.1    Mizuguchi, G.2    Hamiche, A.3    Wu, C.4
  • 26
    • 0037019333 scopus 로고    scopus 로고
    • Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast
    • Sun ZW, Allis CD. 2002 Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast. Nature 418:104–108. doi: 10.1038/nature00883
    • (2002) Nature , vol.418 , pp. 104-108
    • Sun, Z.W.1    Allis, C.D.2
  • 27
    • 0033664380 scopus 로고    scopus 로고
    • Crystal structure of a nucleosome core particle containing the variant histone H2A.Z
    • Suto RK, Clarkson MJ, Tremethick DJ, Luger K. 2000 Crystal structure of a nucleosome core particle containing the variant histone H2A.Z. Nature Structural Biology 7:1121–1124. doi: 10.1038/81971
    • (2000) Nature Structural Biology , vol.7 , pp. 1121-1124
    • Suto, R.K.1    Clarkson, M.J.2    Tremethick, D.J.3    Luger, K.4
  • 28
    • 79251545788 scopus 로고    scopus 로고
    • The INO80 ATP-dependent chromatin remodeling complex is a nucleosome spacing factor
    • Udugama M, Sabri A, Bartholomew B. 2011 The INO80 ATP-dependent chromatin remodeling complex is a nucleosome spacing factor. Molecular and Cellular Biology 31:662–673. doi: 10.1128/MCB.01035-10
    • (2011) Molecular and Cellular Biology , vol.31 , pp. 662-673
    • Udugama, M.1    Sabri, A.2    Bartholomew, B.3
  • 29
    • 1642453567 scopus 로고    scopus 로고
    • Assembly of yeast chromatin using Iswi complexes
    • Vary JC Jr, Fazzio TG, Tsukiyama T. 2004 Assembly of yeast chromatin using Iswi complexes. Methods in Enzymology 375:88–102. doi: 10.1016/S0076-6879(03)75006-X.
    • (2004) Methods in Enzymology , vol.375 , pp. 88-102
    • Vary, J.C.1    Fazzio, T.G.2    Tsukiyama, T.3
  • 30
    • 60349122111 scopus 로고    scopus 로고
    • A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome
    • Venters BJ, Pugh BF. 2009 A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome. Genome Research 19:360–371. doi: 10.1101/gr.084970.108
    • (2009) Genome Research , vol.19 , pp. 360-371
    • Venters, B.J.1    Pugh, B.F.2
  • 33


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.