-
1
-
-
0034704248
-
Genome-wide location and function of DNA binding proteins
-
Ren B, Robert F, Wyrick JJ, Aparicio O, Jennings EG, Simon I, Zeitlinger J, Schreiber J, Hannett N, Kanin E, Volkert TL, Wilson CJ, Bell SP, Young RA: Genome-wide location and function of DNA binding proteins. Science 2000, 290(5500):2306-2309.
-
(2000)
Science
, vol.290
, Issue.5500
, pp. 2306-2309
-
-
Ren, B.1
Robert, F.2
Wyrick, J.J.3
Aparicio, O.4
Jennings, E.G.5
Simon, I.6
Zeitlinger, J.7
Schreiber, J.8
Hannett, N.9
Kanin, E.10
Volkert, T.L.11
Wilson, C.J.12
Bell, S.P.13
Young, R.A.14
-
2
-
-
30344478870
-
A global map of p53 transcription-factor binding sites in the human genome
-
Wei CL, Wu Q, Vega VB, Chiu KP, Ng P, Zhang T, Shahab A, Yong HC, Fu Y, Weng Z, Liu J, Zhao XD, Chew JL, Lee YL, Kuznetsov VA, Sung WK, Miller LD, Lim B, Liu ET, Yu Q, Ng HH, Ruan Y: A global map of p53 transcription-factor binding sites in the human genome. Cell 2006, 124(1):207-219.
-
(2006)
Cell
, vol.124
, Issue.1
, pp. 207-219
-
-
Wei, C.L.1
Wu, Q.2
Vega, V.B.3
Chiu, K.P.4
Ng, P.5
Zhang, T.6
Shahab, A.7
Yong, H.C.8
Fu, Y.9
Weng, Z.10
Liu, J.11
Zhao, X.D.12
Chew, J.L.13
Lee, Y.L.14
Kuznetsov, V.A.15
Sung, W.K.16
Miller, L.D.17
Lim, B.18
Liu, E.T.19
Yu, Q.20
Ng, H.H.21
Ruan, Y.22
more..
-
3
-
-
34250159524
-
Genome-wide mapping of in vivo protein-DNA interactions
-
Johnson DS, Mortazavi A, Myers RM, Wold B: Genome-wide mapping of in vivo protein-DNA interactions. Science 2007, 316(5830):1497-1502.
-
(2007)
Science
, vol.316
, Issue.5830
, pp. 1497-1502
-
-
Johnson, D.S.1
Mortazavi, A.2
Myers, R.M.3
Wold, B.4
-
4
-
-
0037083376
-
Capturing chromosome conformation
-
Dekker J, Rippe K, Dekker M, Kleckner N: Capturing chromosome conformation. Science 2002, 295(5558):1306-1311.
-
(2002)
Science
, vol.295
, Issue.5558
, pp. 1306-1311
-
-
Dekker, J.1
Rippe, K.2
Dekker, M.3
Kleckner, N.4
-
5
-
-
33750203582
-
Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions
-
Zhao Z, Tavoosidana G, Sjolinder M, Gondor A, Mariano P, Wang S, Kanduri C, Lezcano M, Sandhu KS, Singh U, Pant V, Tiwari V, Kurukuti S, Ohlsson R: Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions. Nat Genet 2006, 38(11):1341-1347.
-
(2006)
Nat Genet
, vol.38
, Issue.11
, pp. 1341-1347
-
-
Zhao, Z.1
Tavoosidana, G.2
Sjolinder, M.3
Gondor, A.4
Mariano, P.5
Wang, S.6
Kanduri, C.7
Lezcano, M.8
Sandhu, K.S.9
Singh, U.10
Pant, V.11
Tiwari, V.12
Kurukuti, S.13
Ohlsson, R.14
-
6
-
-
33750212321
-
Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation captureon- chip (4C)
-
Simonis M, Klous P, Splinter E, Moshkin Y, Willemsen R, de Wit E, van Steensel B, de Laat W: Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation captureon- chip (4C). Nat Genet 2006, 38(11):1348-1354.
-
(2006)
Nat Genet
, vol.38
, Issue.11
, pp. 1348-1354
-
-
Simonis, M.1
Klous, P.2
Splinter, E.3
Moshkin, Y.4
Willemsen, R.5
de Wit, E.6
van Steensel, B.7
de Laat, W.8
-
7
-
-
33749400168
-
Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements
-
Dostie J, Richmond TA, Arnaout RA, Selzer RR, Lee WL, Honan TA, Rubio ED, Krumm A, Lamb J, Nusbaum C, Green RD, Dekker J: Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements. Genome Res 2006, 16(10):1299-1309.
-
(2006)
Genome Res
, vol.16
, Issue.10
, pp. 1299-1309
-
-
Dostie, J.1
Richmond, T.A.2
Arnaout, R.A.3
Selzer, R.R.4
Lee, W.L.5
Honan, T.A.6
Rubio, E.D.7
Krumm, A.8
Lamb, J.9
Nusbaum, C.10
Green, R.D.11
Dekker, J.12
-
8
-
-
84855297335
-
A decade of 3C technologies: insights into nuclear organization
-
de Wit E, de Laat W: A decade of 3C technologies: insights into nuclear organization. Genes Dev 2012, 26(1):11-24.
-
(2012)
Genes Dev
, vol.26
, Issue.1
, pp. 11-24
-
-
de Wit, E.1
de Laat, W.2
-
9
-
-
70449103609
-
An oestrogen-receptor-alpha-bound human chromatin interactome
-
Fullwood MJ, Liu MH, Pan YF, Liu J, Xu H, Mohamed YB, Orlov YL, Velkov S, Ho A, Mei PH, Chew EG, Huang PY, Welboren WJ, Han Y, Ooi HS, Ariyaratne PN, Vega VB, Luo Y, Tan PY, Choy PY, Wansa KD, Zhao B, Lim KS, Leow SC, Yow JS, Joseph R, Li H, Desai KV, Thomsen JS, Lee YK, et al: An oestrogen-receptor-alpha-bound human chromatin interactome. Nature 2009, 462(7269):58-64.
-
(2009)
Nature
, vol.462
, Issue.7269
, pp. 58-64
-
-
Fullwood, M.J.1
Liu, M.H.2
Pan, Y.F.3
Liu, J.4
Xu, H.5
Mohamed, Y.B.6
Orlov, Y.L.7
Velkov, S.8
Ho, A.9
Mei, P.H.10
Chew, E.G.11
Huang, P.Y.12
Welboren, W.J.13
Han, Y.14
Ooi, H.S.15
Ariyaratne, P.N.16
Vega, V.B.17
Luo, Y.18
Tan, P.Y.19
Choy, P.Y.20
Wansa, K.D.21
Zhao, B.22
Lim, K.S.23
Leow, S.C.24
Yow, J.S.25
Joseph, R.26
Li, H.27
Desai, K.V.28
Thomsen, J.S.29
Lee, Y.K.30
more..
-
10
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A, Amit I, Lajoie BR, Sabo PJ, Dorschner MO, Sandstrom R, Bernstein B, Bender MA, Groudine M, Gnirke A, Stamatoyannopoulos J, Mirny LA, Lander ES, Dekker: Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 2009, 326(5950):289-293.
-
(2009)
Science
, vol.326
, Issue.5950
, pp. 289-293
-
-
Lieberman-Aiden, E.1
van Berkum, N.L.2
Williams, L.3
Imakaev, M.4
Ragoczy, T.5
Telling, A.6
Amit, I.7
Lajoie, B.R.8
Sabo, P.J.9
Dorschner, M.O.10
Sandstrom, R.11
Bernstein, B.12
Bender, M.A.13
Groudine, M.14
Gnirke, A.15
Stamatoyannopoulos, J.16
Mirny, L.A.17
Lander, E.S.18
Dekker19
-
11
-
-
84862908850
-
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
-
Li G, Ruan X, Auerbach RK, Sandhu KS, Zheng M, Wang P, Poh HM, Goh Y, Lim J, Zhang J, Sim HS, Peh SQ, Mulawadi FH, Ong CT, Orlov YL, Hong S, Zhang Z, Landt S, Raha D, Euskirchen G, Wei CL, Ge W, Wang H, Davis C, Fisher-Aylor KI, Mortazavi A, Gerstein M, Gingeras T, Wold B, Sun T, et al: Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation. Cell 2012, 148(1-2):84-98.
-
(2012)
Cell
, vol.148
, Issue.1-2
, pp. 84-98
-
-
Li, G.1
Ruan, X.2
Auerbach, R.K.3
Sandhu, K.S.4
Zheng, M.5
Wang, P.6
Poh, H.M.7
Goh, Y.8
Lim, J.9
Zhang, J.10
Sim, H.S.11
Peh, S.Q.12
Mulawadi, F.H.13
Ong, C.T.14
Orlov, Y.L.15
Hong, S.16
Zhang, Z.17
Landt, S.18
Raha, D.19
Euskirchen, G.20
Wei, C.L.21
Ge, W.22
Wang, H.23
Davis, C.24
Fisher-Aylor, K.I.25
Mortazavi, A.26
Gerstein, M.27
Gingeras, T.28
Wold, B.29
Sun, T.30
more..
-
12
-
-
84857781464
-
Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization
-
Chepelev I, Wei G, Wangsa D, Tang Q, Zhao K: Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization. Cell Res 2012, 22(3):490-503.
-
(2012)
Cell Res
, vol.22
, Issue.3
, pp. 490-503
-
-
Chepelev, I.1
Wei, G.2
Wangsa, D.3
Tang, Q.4
Zhao, K.5
-
13
-
-
79959699992
-
CTCF-mediated functional chromatin interactome in pluripotent cells
-
Handoko L, Xu H, Li G, Ngan CY, Chew E, Schnapp M, Lee CW, Ye C, Ping JL, Mulawadi F, Wong E, Sheng J, Zhang Y, Poh T, Chan CS, Kunarso G, Shahab A, Bourque G, Cacheux-Rataboul V, Sung WK, Ruan Y, Wei CL: CTCF-mediated functional chromatin interactome in pluripotent cells. Nat Genet 2011, 43(7):630-638.
-
(2011)
Nat Genet
, vol.43
, Issue.7
, pp. 630-638
-
-
Handoko, L.1
Xu, H.2
Li, G.3
Ngan, C.Y.4
Chew, E.5
Schnapp, M.6
Lee, C.W.7
Ye, C.8
Ping, J.L.9
Mulawadi, F.10
Wong, E.11
Sheng, J.12
Zhang, Y.13
Poh, T.14
Chan, C.S.15
Kunarso, G.16
Shahab, A.17
Bourque, G.18
Cacheux-Rataboul, V.19
Sung, W.K.20
Ruan, Y.21
Wei, C.L.22
more..
-
14
-
-
84916880365
-
Control of cell identity genes occurs in insulated neighborhoods in Mammalian chromosomes
-
Dowen JM, Fan ZP, Hnisz D, Ren G, Abraham BJ, Zhang LN, Weintraub AS, Schuijers J, Lee TI, Zhao K, Young RA: Control of cell identity genes occurs in insulated neighborhoods in Mammalian chromosomes. Cell 2014, 159(2):374-387.
-
(2014)
Cell
, vol.159
, Issue.2
, pp. 374-387
-
-
Dowen, J.M.1
Fan, Z.P.2
Hnisz, D.3
Ren, G.4
Abraham, B.J.5
Zhang, L.N.6
Weintraub, A.S.7
Schuijers, J.8
Lee, T.I.9
Zhao, K.10
Young, R.A.11
-
15
-
-
84890432056
-
Chromatin connectivity maps reveal dynamic promoterenhancer long-range associations
-
Zhang Y, Wong CH, Birnbaum RY, Li G, Favaro R, Ngan CY, Lim J, Tai E, Poh HM, Wong E, Mulawadi FH, Sung WK, Nicolis S, Ahituv N, Ruan Y, Wei CL: Chromatin connectivity maps reveal dynamic promoterenhancer long-range associations. Nature 2013, 504(7479):306-310.
-
(2013)
Nature
, vol.504
, Issue.7479
, pp. 306-310
-
-
Zhang, Y.1
Wong, C.H.2
Birnbaum, R.Y.3
Li, G.4
Favaro, R.5
Ngan, C.Y.6
Lim, J.7
Tai, E.8
Poh, H.M.9
Wong, E.10
Mulawadi, F.H.11
Sung, W.K.12
Nicolis, S.13
Ahituv, N.14
Ruan, Y.15
Wei, C.L.16
-
16
-
-
84894589713
-
Interactome maps of mouse gene regulatory domains reveal basic principles of transcriptional regulation
-
Kieffer-Kwon KR, Tang Z, Mathe E, Qian J, Sung MH, Li G, Resch W, Baek S, Pruett N, Grontved L, Vian L, Nelson S, Zare H, Hakim O, Reyon D, Yamane A, Nakahashi H, Kovalchuk AL, Zhou J, Joung JK, Sartorelli V, Wei CL, Ruan X, Hager GL, Ruan Y, Casellas R: Interactome maps of mouse gene regulatory domains reveal basic principles of transcriptional regulation. Cell 2013, 155(7):1507-1520.
-
(2013)
Cell
, vol.155
, Issue.7
, pp. 1507-1520
-
-
Kieffer-Kwon, K.R.1
Tang, Z.2
Mathe, E.3
Qian, J.4
Sung, M.H.5
Li, G.6
Resch, W.7
Baek, S.8
Pruett, N.9
Grontved, L.10
Vian, L.11
Nelson, S.12
Zare, H.13
Hakim, O.14
Reyon, D.15
Yamane, A.16
Nakahashi, H.17
Kovalchuk, A.L.18
Zhou, J.19
Joung, J.K.20
Sartorelli, V.21
Wei, C.L.22
Ruan, X.23
Hager, G.L.24
Ruan, Y.25
Casellas, R.26
more..
-
17
-
-
84870495610
-
TNFalpha signals through specialized factories where responsive coding and miRNA genes are transcribed
-
Papantonis A, Kohro T, Baboo S, Larkin JD, Deng B, Short P, Tsutsumi S, Taylor S, Kanki Y, Kobayashi M, Li G, Poh HM, Ruan X, Aburatani H, Ruan Y, Kodama T, Wada Y, Cook PR: TNFalpha signals through specialized factories where responsive coding and miRNA genes are transcribed. EMBO J 2012, 31(23):4404-4414.
-
(2012)
EMBO J
, vol.31
, Issue.23
, pp. 4404-4414
-
-
Papantonis, A.1
Kohro, T.2
Baboo, S.3
Larkin, J.D.4
Deng, B.5
Short, P.6
Tsutsumi, S.7
Taylor, S.8
Kanki, Y.9
Kobayashi, M.10
Li, G.11
Poh, H.M.12
Ruan, X.13
Aburatani, H.14
Ruan, Y.15
Kodama, T.16
Wada, Y.17
Cook, P.R.18
-
18
-
-
84881119091
-
The genomic landscape of cohesin-associated chromatin interactions
-
Demare LE, Leng J, Cotney J, Reilly SK, Yin J, Sarro R, Noonan JP: The genomic landscape of cohesin-associated chromatin interactions. Genome Research 2013, 23(8):1224-1234.
-
(2013)
Genome Research
, vol.23
, Issue.8
, pp. 1224-1234
-
-
Demare, L.E.1
Leng, J.2
Cotney, J.3
Reilly, S.K.4
Yin, J.5
Sarro, R.6
Noonan, J.P.7
-
19
-
-
84913537605
-
Genome-wide map of regulatory interactions in the human genome
-
Heidari N, Phanstiel DH, He C, Grubert F, Jahanbanian F, Kasowski M, Zhang MQ, Snyder MP: Genome-wide map of regulatory interactions in the human genome. Genome Research 2014.
-
(2014)
Genome Research
-
-
Heidari, N.1
Phanstiel, D.H.2
He, C.3
Grubert, F.4
Jahanbanian, F.5
Kasowski, M.6
Zhang, M.Q.7
Snyder, M.P.8
-
20
-
-
84870404918
-
Large-scale functional organization of long-range chromatin interaction networks
-
Sandhu KS, Li G, Poh HM, Quek YL, Sia YY, Peh SQ, Mulawadi FH, Lim J, Sikic M, Menghi F, Thalamuthu A, Sung WK, Ruan X, Fullwood MJ, Liu E, Csermely P, Ruan Y: Large-scale functional organization of long-range chromatin interaction networks. Cell Rep 2012, 2(5):1207-1219.
-
(2012)
Cell Rep
, vol.2
, Issue.5
, pp. 1207-1219
-
-
Sandhu, K.S.1
Li, G.2
Poh, H.M.3
Quek, Y.L.4
Sia, Y.Y.5
Peh, S.Q.6
Mulawadi, F.H.7
Lim, J.8
Sikic, M.9
Menghi, F.10
Thalamuthu, A.11
Sung, W.K.12
Ruan, X.13
Fullwood, M.J.14
Liu, E.15
Csermely, P.16
Ruan, Y.17
-
21
-
-
84870367830
-
ChIA-PET analysis of transcriptional chromatin interactions
-
Zhang J, Poh HM, Peh SQ, Sia YY, Li G, Mulawadi FH, Goh Y, Fullwood MJ, Sung WK, Ruan X, Ruan Y: ChIA-PET analysis of transcriptional chromatin interactions. Methods 2012, 58(3):289-299.
-
(2012)
Methods
, vol.58
, Issue.3
, pp. 289-299
-
-
Zhang, J.1
Poh, H.M.2
Peh, S.Q.3
Sia, Y.Y.4
Li, G.5
Mulawadi, F.H.6
Goh, Y.7
Fullwood, M.J.8
Sung, W.K.9
Ruan, X.10
Ruan, Y.11
-
22
-
-
77953191060
-
ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing
-
Li G, Fullwood MJ, Xu H, Mulawadi FH, Velkov S, Vega V, Ariyaratne PN, Mohamed YB, Ooi HS, Tennakoon C, Wei CL, Ruan Y, Sung WK: ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing. Genome Biol 2010, 11(2):R22.
-
(2010)
Genome Biol
, vol.11
, Issue.2
-
-
Li, G.1
Fullwood, M.J.2
Xu, H.3
Mulawadi, F.H.4
Velkov, S.5
Vega, V.6
Ariyaratne, P.N.7
Mohamed, Y.B.8
Ooi, H.S.9
Tennakoon, C.10
Wei, C.L.11
Ruan, Y.12
Sung, W.K.13
-
23
-
-
84922391809
-
A statistical model of ChIA-PET data for accurate detection of chromatin 3D interactions
-
Paulsen J, Rodland EA, Holden L, Holden M, Hovig E: A statistical model of ChIA-PET data for accurate detection of chromatin 3D interactions. Nucleic acids research 2015, 42(18):e143.
-
(2015)
Nucleic acids research
, vol.42
, Issue.18
-
-
Paulsen, J.1
Rodland, E.A.2
Holden, L.3
Holden, M.4
Hovig, E.5
-
24
-
-
67649884743
-
Fast and accurate short read alignment with Burrows- Wheeler transform
-
Li H, Durbin R: Fast and accurate short read alignment with Burrows- Wheeler transform. Bioinformatics 2009, 25(14):1754-1760.
-
(2009)
Bioinformatics
, vol.25
, Issue.14
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
25
-
-
62349130698
-
Ultrafast and memoryefficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL: Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol 2009, 10(3):R25.
-
(2009)
Genome Biol
, vol.10
, Issue.3
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
26
-
-
84865098750
-
BatMis: a fast algorithm for kmismatch mapping
-
Tennakoon C, Purbojati RW, Sung WK: BatMis: a fast algorithm for kmismatch mapping. Bioinformatics 2012, 28(16):2122-2128.
-
(2012)
Bioinformatics
, vol.28
, Issue.16
, pp. 2122-2128
-
-
Tennakoon, C.1
Purbojati, R.W.2
Sung, W.K.3
-
27
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R: The Sequence Alignment/Map format and SAMtools. Bioinformatics 2009, 25(16):2078-2079.
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
28
-
-
77951770756
-
BEDTools: a flexible suite of utilities for comparing genomic features
-
Quinlan AR, Hall IM: BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 2010, 26(6):841-842.
-
(2010)
Bioinformatics
, vol.26
, Issue.6
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
30
-
-
84903134982
-
Nucleosome eviction and multiple co-factor binding predict estrogen-receptor-alpha-associated long-range interactions
-
He C, Wang X, Zhang MQ: Nucleosome eviction and multiple co-factor binding predict estrogen-receptor-alpha-associated long-range interactions. Nucleic acids research 2014, 42(11):6935-6944.
-
(2014)
Nucleic acids research
, vol.42
, Issue.11
, pp. 6935-6944
-
-
He, C.1
Wang, X.2
Zhang, M.Q.3
-
31
-
-
84860395199
-
Chromatin interaction networks and higher order architectures of eukaryotic genomes
-
Sandhu KS, Li G, Sung WK, Ruan Y: Chromatin interaction networks and higher order architectures of eukaryotic genomes. J Cell Biochem 2011, 112(9):2218-2221.
-
(2011)
J Cell Biochem
, vol.112
, Issue.9
, pp. 2218-2221
-
-
Sandhu, K.S.1
Li, G.2
Sung, W.K.3
Ruan, Y.4
-
32
-
-
84898935507
-
Dissecting the chromatin interactome of microRNA genes
-
Chen D, Fu LY, Zhang Z, Li G, Zhang H, Jiang L, Harrison AP, Shanahan HP, Klukas C, Zhang HY, Ruan Y, Chen LL, Chen M: Dissecting the chromatin interactome of microRNA genes. Nucleic acids research 2014, 42(5):3028-3043.
-
(2014)
Nucleic acids research
, vol.42
, Issue.5
, pp. 3028-3043
-
-
Chen, D.1
Fu, L.Y.2
Zhang, Z.3
Li, G.4
Zhang, H.5
Jiang, L.6
Harrison, A.P.7
Shanahan, H.P.8
Klukas, C.9
Zhang, H.Y.10
Ruan, Y.11
Chen, L.L.12
Chen, M.13
-
33
-
-
84873507172
-
Bayesian inference of spatial organizations of chromosomes
-
Hu M, Deng K, Qin Z, Dixon J, Selvaraj S, Fang J, Ren B, Liu JS: Bayesian inference of spatial organizations of chromosomes. PLoS computational biology 2013, 9(1):e1002893.
-
(2013)
PLoS computational biology
, vol.9
, Issue.1
-
-
Hu, M.1
Deng, K.2
Qin, Z.3
Dixon, J.4
Selvaraj, S.5
Fang, J.6
Ren, B.7
Liu, J.S.8
-
34
-
-
84885997686
-
The sequencing bias relaxed characteristics of Hi-C derived data and implications for chromatin 3D modeling
-
Peng C, Fu LY, Dong PF, Deng ZL, Li JX, Wang XT, Zhang HY: The sequencing bias relaxed characteristics of Hi-C derived data and implications for chromatin 3D modeling. Nucleic acids research 2013, 41(19):e183.
-
(2013)
Nucleic acids research
, vol.41
, Issue.19
-
-
Peng, C.1
Fu, L.Y.2
Dong, P.F.3
Deng, Z.L.4
Li, J.X.5
Wang, X.T.6
Zhang, H.Y.7
-
35
-
-
84887416171
-
3D Chromosome Modeling with Semi- Definite Programming and Hi-C Data
-
Zhang Z, Li G, Toh KC, Sung WK: 3D Chromosome Modeling with Semi- Definite Programming and Hi-C Data. Journal of computational biology 2013, 20(11):831-846.
-
(2013)
Journal of computational biology
, vol.20
, Issue.11
, pp. 831-846
-
-
Zhang, Z.1
Li, G.2
Toh, K.C.3
Sung, W.K.4
-
36
-
-
84937215899
-
Reconstruction of three-dimensional structures of chromatin and its biological implications
-
Peng C, Li G, Zhang H, Ruan Y: Reconstruction of three-dimensional structures of chromatin and its biological implications. SCIENTIA SINICA Vitae 2014, 44:794-802.
-
(2014)
SCIENTIA SINICA Vitae
, vol.44
, pp. 794-802
-
-
Peng, C.1
Li, G.2
Zhang, H.3
Ruan, Y.4
-
37
-
-
80054984337
-
Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture
-
Yaffe E, Tanay A: Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture. Nat Genet 2011.
-
(2011)
Nat Genet
-
-
Yaffe, E.1
Tanay, A.2
-
39
-
-
84899006108
-
Quantitative analysis of genomic element interactions by molecular colony technique
-
Gavrilov AA, Chetverina HV, Chermnykh ES, Razin SV, Chetverin AB: Quantitative analysis of genomic element interactions by molecular colony technique. Nucleic acids research 2014, 42(5):e36.
-
(2014)
Nucleic acids research
, vol.42
, Issue.5
-
-
Gavrilov, A.A.1
Chetverina, H.V.2
Chermnykh, E.S.3
Razin, S.V.4
Chetverin, A.B.5
-
40
-
-
84962558313
-
Functional gene groups are concentrated within chromosomes, among chromosomes and in the nuclear space of the human genome
-
Thevenin A, Ein-Dor L, Ozery-Flato M, Shamir R: Functional gene groups are concentrated within chromosomes, among chromosomes and in the nuclear space of the human genome. Nucleic acids research 2014, 42(15):9854-9861.
-
(2014)
Nucleic acids research
, vol.42
, Issue.15
, pp. 9854-9861
-
-
Thevenin, A.1
Ein-Dor, L.2
Ozery-Flato, M.3
Shamir, R.4
|