메뉴 건너뛰기




Volumn 17, Issue 7, 2015, Pages 2532-2541

In situ DNA-hybridization chain reaction (HCR): A facilitated in situ HCR system for the detection of environmental microorganisms

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS); METHANOSAETACEAE;

EID: 84937046998     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/1462-2920.12745     Document Type: Article
Times cited : (70)

References (28)
  • 1
    • 42349093774 scopus 로고    scopus 로고
    • Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques
    • Amann, R., and Fuchs, B.M. (2008) Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques. Nat Rev 6: 339-348.
    • (2008) Nat Rev , vol.6 , pp. 339-348
    • Amann, R.1    Fuchs, B.M.2
  • 2
    • 0025099312 scopus 로고
    • Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
    • Amann, R.I., Krumholz, L., and Stahl, D.A. (1990) Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J Bacteriol 172: 762-770.
    • (1990) J Bacteriol , vol.172 , pp. 762-770
    • Amann, R.I.1    Krumholz, L.2    Stahl, D.A.3
  • 3
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R.I., Ludwing, W., and Schleifer, K.H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 143-169.
    • (1995) Microbiol Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwing, W.2    Schleifer, K.H.3
  • 4
    • 0042529205 scopus 로고    scopus 로고
    • Is the in situ accessibility of the 16S rRNA of Escherichia coli for Cy3-labeled oligonucleotide probes predicted by a three-dimensional structure model of the 30S ribosomal subunit?
    • Behrens, S., Fuchs, B.M., Mueller, F., and Amann, R.I. (2003) Is the in situ accessibility of the 16S rRNA of Escherichia coli for Cy3-labeled oligonucleotide probes predicted by a three-dimensional structure model of the 30S ribosomal subunit? Appl Environ Microbiol 69: 4935-4941.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 4935-4941
    • Behrens, S.1    Fuchs, B.M.2    Mueller, F.3    Amann, R.I.4
  • 6
    • 0141592791 scopus 로고    scopus 로고
    • Quantitative assessment of picoeukaryotes in the natural environment by using taxon-specific oligonucleotide probes in association with tyramide signal amplification-fluorescence in situ hybridization and flow cytometry
    • Biegala, I.C., Not, F., Vaulot, D., and Simon, N. (2003) Quantitative assessment of picoeukaryotes in the natural environment by using taxon-specific oligonucleotide probes in association with tyramide signal amplification-fluorescence in situ hybridization and flow cytometry. Appl Environ Microbiol 69: 5519-5529.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5519-5529
    • Biegala, I.C.1    Not, F.2    Vaulot, D.3    Simon, N.4
  • 8
    • 84901660493 scopus 로고    scopus 로고
    • Next-generation in situ hybridization chain reaction: Higher gain, lower cost, greater durability
    • Choi, H.M.T., Beck, V.A., and Pierce, N.A. (2014) Next-generation in situ hybridization chain reaction: Higher gain, lower cost, greater durability. ACS Nano 8: 4284-4294.
    • (2014) ACS Nano , vol.8 , pp. 4284-4294
    • Choi, H.M.T.1    Beck, V.A.2    Pierce, N.A.3
  • 9
    • 80052327915 scopus 로고    scopus 로고
    • Immuno-hybridization chain reaction for enhancing detection of individual cytokine-secreting human peripheral mononuclear cells
    • Choi, J., Love, K.R., Gong, Y., Gierahn, T.M., and Love, J.C. (2011) Immuno-hybridization chain reaction for enhancing detection of individual cytokine-secreting human peripheral mononuclear cells. Anal Chem 83: 6890-6895.
    • (2011) Anal Chem , vol.83 , pp. 6890-6895
    • Choi, J.1    Love, K.R.2    Gong, Y.3    Gierahn, T.M.4    Love, J.C.5
  • 10
    • 0344172842 scopus 로고    scopus 로고
    • The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set
    • Daims, H., Brühl, A., Amann, R.I., Schleifer, K.-H., and Wagner, M. (1999) The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22: 434-444.
    • (1999) Syst Appl Microbiol , vol.22 , pp. 434-444
    • Daims, H.1    Brühl, A.2    Amann, R.I.3    Schleifer, K.-H.4    Wagner, M.5
  • 11
    • 33644868597 scopus 로고    scopus 로고
    • Daime, a novel image analysis program for microbial ecology and biofilm research
    • Daims, H., Lucker, S., and Wagner, M. (2006) Daime, a novel image analysis program for microbial ecology and biofilm research. Environ Microbiol 8: 200-213.
    • (2006) Environ Microbiol , vol.8 , pp. 200-213
    • Daims, H.1    Lucker, S.2    Wagner, M.3
  • 12
    • 0024507744 scopus 로고
    • Phylogenetic stains: ribosomal RNA-based probes for the identification of signal cells
    • DeLong, E.F., Wickhan, G.S., and Pace, N.R. (1989) Phylogenetic stains: ribosomal RNA-based probes for the identification of signal cells. Science 243: 1360-1363.
    • (1989) Science , vol.243 , pp. 1360-1363
    • DeLong, E.F.1    Wickhan, G.S.2    Pace, N.R.3
  • 13
    • 7444246060 scopus 로고    scopus 로고
    • Triggered amplification by hybridization chain reaction
    • Dirks, R.M., and Pierce, N.A. (2004) Triggered amplification by hybridization chain reaction. Proc Natl Acad Sci USA 101: 15275-15288.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 15275-15288
    • Dirks, R.M.1    Pierce, N.A.2
  • 14
    • 0029149054 scopus 로고
    • The planctomycetes: emerging models for microbial ecology, evolution and cell biology
    • Fuerst, J.-A. (1995) The planctomycetes: emerging models for microbial ecology, evolution and cell biology. Microbiology 141: 1493-1506.
    • (1995) Microbiology , vol.141 , pp. 1493-1506
    • Fuerst, J.-A.1
  • 15
    • 50049102753 scopus 로고    scopus 로고
    • Quantification of target molecules needed to detect microorganisms by fluorescence in situ hybridization (FISH) and catalyzed reporter deposition-FISH
    • Hoshino, T., Yilmaz, L.S., Noguera, D.R., Daims, H., and Wagner, M. (2008) Quantification of target molecules needed to detect microorganisms by fluorescence in situ hybridization (FISH) and catalyzed reporter deposition-FISH. Appl Environ Microbiol 74: 5068-5077.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 5068-5077
    • Hoshino, T.1    Yilmaz, L.S.2    Noguera, D.R.3    Daims, H.4    Wagner, M.5
  • 16
    • 0000953403 scopus 로고
    • Archaobacterial cell envelopes
    • König, H. (1988) Archaobacterial cell envelopes. Can J Microbiol 34: 395-406.
    • (1988) Can J Microbiol , vol.34 , pp. 395-406
    • König, H.1
  • 17
    • 84875164657 scopus 로고    scopus 로고
    • CARD-FISH for environmental microorganisms: technical advancement and future applications
    • Kubota, K. (2013) CARD-FISH for environmental microorganisms: technical advancement and future applications. Microbes Environ 28: 3-12.
    • (2013) Microbes Environ , vol.28 , pp. 3-12
    • Kubota, K.1
  • 18
  • 19
    • 35748983784 scopus 로고    scopus 로고
    • Single-cell genomic sequencing using multiple displacement amplification
    • Lasken, R.S. (2007) Single-cell genomic sequencing using multiple displacement amplification. Curr Opin Microbiol 10: 510-516.
    • (2007) Curr Opin Microbiol , vol.10 , pp. 510-516
    • Lasken, R.S.1
  • 20
    • 67650465242 scopus 로고    scopus 로고
    • Optimization of three FISH procedures for in situ detection of anaerobic ammonium oxidizing bacteria in biological wastewater treatment
    • Pavlekovic, M., Schmid, M.C., Schmider-Poignee, N., Spring, S., Pilhofer, M., Gaul, T., etal. (2009) Optimization of three FISH procedures for in situ detection of anaerobic ammonium oxidizing bacteria in biological wastewater treatment. J Microbiol Methods 78: 119-126.
    • (2009) J Microbiol Methods , vol.78 , pp. 119-126
    • Pavlekovic, M.1    Schmid, M.C.2    Schmider-Poignee, N.3    Spring, S.4    Pilhofer, M.5    Gaul, T.6
  • 21
    • 4644226321 scopus 로고    scopus 로고
    • Simultaneous fluorescence in situ hybridization of mRNA and rRNA in environmental bacteria
    • Pernthaler, A., and Amann, R.I. (2004) Simultaneous fluorescence in situ hybridization of mRNA and rRNA in environmental bacteria. Appl Environ Microbiol 70: 5426-5433.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 5426-5433
    • Pernthaler, A.1    Amann, R.I.2
  • 22
    • 0036276618 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria
    • Pernthaler, A., Pernthaler, J., and Amann, R.I. (2002) Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl Environ Microbiol 68: 3094-3101.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3094-3101
    • Pernthaler, A.1    Pernthaler, J.2    Amann, R.I.3
  • 23
    • 83655211676 scopus 로고    scopus 로고
    • Abundance and diversity of Planctomycetes in a Tyrrhenian coastal system of central Italy
    • Pizzetti, I., Gobet, A., Fuchs, B.M., Amann, R., and Fazi, S. (2011) Abundance and diversity of Planctomycetes in a Tyrrhenian coastal system of central Italy. Aquat Microb Ecol 65: 129-141.
    • (2011) Aquat Microb Ecol , vol.65 , pp. 129-141
    • Pizzetti, I.1    Gobet, A.2    Fuchs, B.M.3    Amann, R.4    Fazi, S.5
  • 24
    • 84885030518 scopus 로고    scopus 로고
    • Localizing transcripts to single cells suggests an important role of uncultured Deltaproteobacteria in the termite gut hydrogen economy
    • Rosenthal, A.Z., Zhang, X., Lucey, K.S., Ottesen, E.A., Trivedi, V., Choi, H.M., etal. (2013) Localizing transcripts to single cells suggests an important role of uncultured Deltaproteobacteria in the termite gut hydrogen economy. Proc Natl Acad Sci USA 110: 16163-16168.
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. 16163-16168
    • Rosenthal, A.Z.1    Zhang, X.2    Lucey, K.S.3    Ottesen, E.A.4    Trivedi, V.5    Choi, H.M.6
  • 26
    • 0003341851 scopus 로고
    • Development of application of nucleic acid probes
    • Stackebrandt, E., and Goodfellow, M. (eds). Chichester, UK: John Wiley and Sons
    • Stahl, D.A., and Amann, R. (1991) Development of application of nucleic acid probes. In Nucleic Acid Techiques in Bacterial Systematic. Stackebrandt, E., and Goodfellow, M. (eds). Chichester, UK: John Wiley and Sons, pp. 205-248.
    • (1991) Nucleic Acid Techiques in Bacterial Systematic , pp. 205-248
    • Stahl, D.A.1    Amann, R.2
  • 27
    • 70349531263 scopus 로고    scopus 로고
    • Single-cell ecophysiology of microbes as revealed by Raman microspectroscopy or secondary ion mass spectrometry imaging
    • Wagner, M. (2009) Single-cell ecophysiology of microbes as revealed by Raman microspectroscopy or secondary ion mass spectrometry imaging. Annu Rev Microbiol 63: 411-429.
    • (2009) Annu Rev Microbiol , vol.63 , pp. 411-429
    • Wagner, M.1
  • 28


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.