메뉴 건너뛰기




Volumn 110, Issue 40, 2013, Pages 16163-16168

Localizing transcripts to single cells suggests an important role of uncultured deltaproteobacteria in the termite gut hydrogen economy

Author keywords

Acetogenesis; Microfluidic digital PCR; RNA Seq

Indexed keywords

CARBON DIOXIDE; FORMATE DEHYDROGENASE; HYDROGEN; LIGNOCELLULOSE; MESSENGER RNA; RIBOSOME RNA;

EID: 84885030518     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1307876110     Document Type: Article
Times cited : (27)

References (36)
  • 2
    • 0025688497 scopus 로고
    • Microbial H2/CO2 acetogenesis in animal guts: Nature and nutritional significance
    • Breznak JA, Kane MD (1990) Microbial H2/CO2 acetogenesis in animal guts: Nature and nutritional significance. FEMS Microbiol Rev 7(3-4):309-313.
    • (1990) FEMS Microbiol Rev , vol.7 , Issue.3-4 , pp. 309-313
    • Breznak, J.A.1    Kane, M.D.2
  • 4
    • 0022514499 scopus 로고
    • Acetate synthesis from H2 plus CO2 by termite gut microbes
    • Breznak JA, Switzer JM (1986) Acetate synthesis from H2 plus CO2 by termite gut microbes. Appl Environ Microbiol 52(4):623-630.
    • (1986) Appl Environ Microbiol , vol.52 , Issue.4 , pp. 623-630
    • Breznak, J.A.1    Switzer, J.M.2
  • 5
    • 34948874234 scopus 로고    scopus 로고
    • Hydrogen is the central free intermediate during lignocellulose degradation by termite gut symbionts
    • Pester M, Brune A (2007) Hydrogen is the central free intermediate during lignocellulose degradation by termite gut symbionts. ISME J 1(6):551-565.
    • (2007) ISME J , vol.1 , Issue.6 , pp. 551-565
    • Pester, M.1    Brune, A.2
  • 6
    • 33745171062 scopus 로고    scopus 로고
    • Expression profiles of fhs (FTHFS) genes support the hypothesis that spirochaetes dominate reductive acetogenesis in the hindgut of lower termites
    • Pester M, Brune A (2006) Expression profiles of fhs (FTHFS) genes support the hypothesis that spirochaetes dominate reductive acetogenesis in the hindgut of lower termites. Environ Microbiol 8(7):1261-1270.
    • (2006) Environ Microbiol , vol.8 , Issue.7 , pp. 1261-1270
    • Pester, M.1    Brune, A.2
  • 7
    • 0025886921 scopus 로고
    • Acetonema longum gen nov sp nov, an H2/CO2 acetogenic bacterium from the termite, Pterotermes occidentis
    • Kane MD, Breznak JA (1991) Acetonema longum gen. nov. sp. nov., an H2/CO2 acetogenic bacterium from the termite, Pterotermes occidentis. Arch Microbiol 156(2): 91-98.
    • (1991) Arch Microbiol , vol.156 , Issue.2 , pp. 91-98
    • Kane, M.D.1    Breznak, J.A.2
  • 8
    • 0033613836 scopus 로고    scopus 로고
    • Acetogenesis from H2 plus CO2 by spirochetes from termite guts
    • Leadbetter JR, Schmidt TM, Graber JR, Breznak JA (1999) Acetogenesis from H2 plus CO2 by spirochetes from termite guts. Science 283(5402):686-689.
    • (1999) Science , vol.283 , Issue.5402 , pp. 686-689
    • Leadbetter, J.R.1    Schmidt, T.M.2    Graber, J.R.3    Breznak, J.A.4
  • 9
    • 77954693098 scopus 로고    scopus 로고
    • Diversity of formyltetrahydrofolate synthetases in the guts of the wood-feeding cockroach Cryptocercus punctulatus and the omnivorous cockroach Periplaneta americana
    • Ottesen EA, Leadbetter JR (2010) Diversity of formyltetrahydrofolate synthetases in the guts of the wood-feeding cockroach Cryptocercus punctulatus and the omnivorous cockroach Periplaneta americana. Appl Environ Microbiol 76(14):4909-4913.
    • (2010) Appl Environ Microbiol , vol.76 , Issue.14 , pp. 4909-4913
    • Ottesen, E.A.1    Leadbetter, J.R.2
  • 10
    • 0141814799 scopus 로고    scopus 로고
    • Analysis of genes of tetrahydrofolate-dependent metabolism from cultivated spirochaetes and the gut community of the termite Zootermopsis angusticollis
    • Salmassi TM, Leadbetter JR (2003) Analysis of genes of tetrahydrofolate-dependent metabolism from cultivated spirochaetes and the gut community of the termite Zootermopsis angusticollis. Microbiology 149(Pt 9):2529-2537.
    • (2003) Microbiology , vol.149 , Issue.PART. 9 , pp. 2529-2537
    • Salmassi, T.M.1    Leadbetter, J.R.2
  • 11
    • 79551498312 scopus 로고    scopus 로고
    • Genes for selenium-dependent and independent formate dehydrogenase in the gut microbial communities of three lower, wood-feeding termites and a wood-feeding roach
    • Zhang X, Matson EG, Leadbetter JR (2011) Genes for selenium-dependent and independent formate dehydrogenase in the gut microbial communities of three lower, wood-feeding termites and a wood-feeding roach. Environ Microbiol 13(2):307-323.
    • (2011) Environ Microbiol , vol.13 , Issue.2 , pp. 307-323
    • Zhang, X.1    Matson, E.G.2    Leadbetter, J.R.3
  • 12
    • 36549000721 scopus 로고    scopus 로고
    • Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
    • Warnecke F, et al. (2007) Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature 450(7169):560-565.
    • (2007) Nature , vol.450 , Issue.7169 , pp. 560-565
    • Warnecke, F.1
  • 13
    • 77955244141 scopus 로고    scopus 로고
    • Selenium controls transcription of paralogous formate dehydrogenase genes in the termite gut acetogen, Treponema primitia
    • Matson EG, Zhang X, Leadbetter JR (2010) Selenium controls transcription of paralogous formate dehydrogenase genes in the termite gut acetogen, Treponema primitia. Environ Microbiol 12(8):2245-2258.
    • (2010) Environ Microbiol , vol.12 , Issue.8 , pp. 2245-2258
    • Matson, E.G.1    Zhang, X.2    Leadbetter, J.R.3
  • 14
    • 33845342557 scopus 로고    scopus 로고
    • Microfluidic digital PCR enables multigene analysis of individual environmental bacteria
    • Ottesen EA, Hong JW, Quake SR, Leadbetter JR (2006) Microfluidic digital PCR enables multigene analysis of individual environmental bacteria. Science 314(5804): 1464-1467.
    • (2006) Science , vol.314 , Issue.5804 , pp. 1464-1467
    • Ottesen, E.A.1    Hong, J.W.2    Quake, S.R.3    Leadbetter, J.R.4
  • 15
    • 54949153045 scopus 로고    scopus 로고
    • Acetogenesis and the Wood-Ljungdahl pathway of CO(2) fixation
    • Ragsdale SW, Pierce E (2008) Acetogenesis and the Wood-Ljungdahl pathway of CO(2) fixation. Biochim Biophys Acta 1784(12):1873-1898.
    • (2008) Biochim Biophys Acta , vol.1784 , Issue.12 , pp. 1873-1898
    • Ragsdale, S.W.1    Pierce, E.2
  • 16
    • 0001256080 scopus 로고
    • Nucleotide sequence and expression of the selenocysteine-containing polypeptide of formate dehydrogenase (formate-hydrogen-lyase-linked) from Escherichia coli
    • Zinoni F, Birkmann A, Stadtman TC, Böck A (1986) Nucleotide sequence and expression of the selenocysteine-containing polypeptide of formate dehydrogenase (formate-hydrogen-lyase-linked) from Escherichia coli. Proc Natl Acad Sci USA 83(13): 4650-4654.
    • (1986) Proc Natl Acad Sci USA , vol.83 , Issue.13 , pp. 4650-4654
    • Zinoni, F.1    Birkmann, A.2    Stadtman, T.C.3    Böck, A.4
  • 17
    • 0015611521 scopus 로고
    • CO2 reduction to formate in Clostridium acidi-urici
    • Thauer RK (1973) CO2 reduction to formate in Clostridium acidi-urici. J Bacteriol 114(1):443-444.
    • (1973) J Bacteriol , vol.114 , Issue.1 , pp. 443-444
    • Thauer, R.K.1
  • 18
    • 67651202726 scopus 로고    scopus 로고
    • Electron transfer in syntrophic communities of anaerobic bacteria and archaea
    • Stams AJ, Plugge CM (2009) Electron transfer in syntrophic communities of anaerobic bacteria and archaea. Nat Rev Microbiol 7(8):568-577.
    • (2009) Nat Rev Microbiol , vol.7 , Issue.8 , pp. 568-577
    • Stams, A.J.1    Plugge, C.M.2
  • 19
    • 84865706896 scopus 로고    scopus 로고
    • Evidence for cascades of perturbation and adaptation in the metabolic genes of higher termite gut symbionts
    • Zhang X, Leadbetter JR (2012) Evidence for cascades of perturbation and adaptation in the metabolic genes of higher termite gut symbionts. mBio 3(4), e00223-12.
    • (2012) MBio , vol.3 , Issue.4
    • Zhang, X.1    Leadbetter, J.R.2
  • 20
    • 79959855149 scopus 로고    scopus 로고
    • Probing individual environmental bacteria for viruses by using microfluidic digital PCR
    • Tadmor AD, Ottesen EA, Leadbetter JR, Phillips R (2011) Probing individual environmental bacteria for viruses by using microfluidic digital PCR. Science 333(6038):58-62.
    • (2011) Science , vol.333 , Issue.6038 , pp. 58-62
    • Tadmor, A.D.1    Ottesen, E.A.2    Leadbetter, J.R.3    Phillips, R.4
  • 21
    • 0032722129 scopus 로고    scopus 로고
    • Differential enumeration and in situ localization of microorganisms in the hindgut of the lower termite Mastotermes darwiniensis by hybridization with rRNA-targeted probes
    • Berchtold M, et al. (1999) Differential enumeration and in situ localization of microorganisms in the hindgut of the lower termite Mastotermes darwiniensis by hybridization with rRNA-targeted probes. Arch Microbiol 172(6):407-416.
    • (1999) Arch Microbiol , vol.172 , Issue.6 , pp. 407-416
    • Berchtold, M.1
  • 22
    • 0029782668 scopus 로고    scopus 로고
    • Physiological ecology of Methanobrevibacter cuticularis sp nov and Methanobrevibacter curvatus sp nov, isolated from the hindgut of the termite Reticulitermes flavipes
    • Leadbetter JR, Breznak JA (1996) Physiological ecology of Methanobrevibacter cuticularis sp. nov. and Methanobrevibacter curvatus sp. nov., isolated from the hindgut of the termite Reticulitermes flavipes. Appl Environ Microbiol 62(10):3620-3631.
    • (1996) Appl Environ Microbiol , vol.62 , Issue.10 , pp. 3620-3631
    • Leadbetter, J.R.1    Breznak, J.A.2
  • 23
    • 46049093760 scopus 로고    scopus 로고
    • Symbioses of flagellates and prokaryotes in the gut of lower termites
    • Ohkuma M (2008) Symbioses of flagellates and prokaryotes in the gut of lower termites. Trends Microbiol 16(7):345-352.
    • (2008) Trends Microbiol , vol.16 , Issue.7 , pp. 345-352
    • Ohkuma, M.1
  • 24
    • 0036241901 scopus 로고    scopus 로고
    • Desulfotignum phosphitoxidans sp nov, a new marine sulfate reducer that oxidizes phosphite to phosphate
    • Schink B, Thiemann V, Laue H, Friedrich MW (2002) Desulfotignum phosphitoxidans sp. nov., a new marine sulfate reducer that oxidizes phosphite to phosphate. Arch Microbiol 177(5):381-391.
    • (2002) Arch Microbiol , vol.177 , Issue.5 , pp. 381-391
    • Schink, B.1    Thiemann, V.2    Laue, H.3    Friedrich, M.W.4
  • 25
    • 0021827927 scopus 로고
    • Autotrophic CO2 fixation by Desulfovibrio baarsii: Demonstration of enzyme-activities characteristic for the acetyl-CoA pathway
    • Jansen K, Fuchs G, Thauer RK (1985) Autotrophic CO2 fixation by Desulfovibrio baarsii: Demonstration of enzyme-activities characteristic for the acetyl-CoA pathway. FEMS Microbiol Lett 28(3):311-315.
    • (1985) FEMS Microbiol Lett , vol.28 , Issue.3 , pp. 311-315
    • Jansen, K.1    Fuchs, G.2    Thauer, R.K.3
  • 26
    • 63849272877 scopus 로고    scopus 로고
    • Candidatus Desulfovibrio trichonymphae, a novel intracellular symbiont of the flagellate Trichonympha agilis in termite gut
    • Sato T, et al. (2009) Candidatus Desulfovibrio trichonymphae, a novel intracellular symbiont of the flagellate Trichonympha agilis in termite gut. Environ Microbiol 11(4):1007-1015.
    • (2009) Environ Microbiol , vol.11 , Issue.4 , pp. 1007-1015
    • Sato, T.1
  • 27
    • 78149287963 scopus 로고    scopus 로고
    • Programmable in situ amplification for multiplexed imaging of mRNA expression
    • Choi HMT, et al. (2010) Programmable in situ amplification for multiplexed imaging of mRNA expression. Nat Biotechnol 28(11):1208-1212.
    • (2010) Nat Biotechnol , vol.28 , Issue.11 , pp. 1208-1212
    • Choi, H.M.T.1
  • 28
    • 4644226321 scopus 로고    scopus 로고
    • Simultaneous fluorescence in situ hybridization of mRNA and rRNA in environmental bacteria
    • Pernthaler A, Amann R (2004) Simultaneous fluorescence in situ hybridization of mRNA and rRNA in environmental bacteria. Appl Environ Microbiol 70(9):5426-5433.
    • (2004) Appl Environ Microbiol , vol.70 , Issue.9 , pp. 5426-5433
    • Pernthaler, A.1    Amann, R.2
  • 29
    • 84870516688 scopus 로고    scopus 로고
    • "Candidatus Ancillula trichonymphae," a novel lineage of endosymbiotic Actinobacteria in termite gut flagellates of the genus Trichonympha
    • Strassert JF, et al. (2012) "Candidatus Ancillula trichonymphae," a novel lineage of endosymbiotic Actinobacteria in termite gut flagellates of the genus Trichonympha. Environ Microbiol 14(12):3259-3270.
    • (2012) Environ Microbiol , vol.14 , Issue.12 , pp. 3259-3270
    • Strassert, J.F.1
  • 30
    • 44449129878 scopus 로고    scopus 로고
    • Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell
    • Hongoh Y, et al. (2008) Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell. Proc Natl Acad Sci USA 105(14):5555-5560.
    • (2008) Proc Natl Acad Sci USA , vol.105 , Issue.14 , pp. 5555-5560
    • Hongoh, Y.1
  • 31
    • 56449115108 scopus 로고    scopus 로고
    • Genome of an endosymbiont coupling N2 fixation to cellulolysis within protist cells in termite gut
    • Hongoh Y, et al. (2008) Genome of an endosymbiont coupling N2 fixation to cellulolysis within protist cells in termite gut. Science 322(5904):1108-1109.
    • (2008) Science , vol.322 , Issue.5904 , pp. 1108-1109
    • Hongoh, Y.1
  • 32
    • 68149150913 scopus 로고    scopus 로고
    • Complex coevolutionary history of symbiotic Bacteroidales bacteria of various protists in the gut of termites
    • Noda S, Hongoh Y, Sato T, Ohkuma M (2009) Complex coevolutionary history of symbiotic Bacteroidales bacteria of various protists in the gut of termites. BMC Evol Biol 9:158.
    • (2009) BMC Evol Biol , vol.9 , pp. 158
    • Noda, S.1    Hongoh, Y.2    Sato, T.3    Ohkuma, M.4
  • 33
    • 0020525735 scopus 로고
    • Volatile fatty acid production by the hindgut microbiota of xylophagous termites
    • Odelson DA, Breznak JA (1983) Volatile fatty acid production by the hindgut microbiota of xylophagous termites. Appl Environ Microbiol 45(5):1602-1613.
    • (1983) Appl Environ Microbiol , vol.45 , Issue.5 , pp. 1602-1613
    • Odelson, D.A.1    Breznak, J.A.2
  • 34
    • 84876087439 scopus 로고    scopus 로고
    • Comparative metagenomic and metatranscriptomic analysis of hindgut paunch microbiota in wood-and dung-feeding higher termites
    • He S, et al. (2013) Comparative metagenomic and metatranscriptomic analysis of hindgut paunch microbiota in wood-and dung-feeding higher termites. PLoS ONE 8(4):e61126.
    • (2013) PLoS ONE , vol.8 , Issue.4
    • He, S.1
  • 35
    • 0026616323 scopus 로고
    • Genesis of acetate and methane by gut bacteria of nutritionally diverse termites
    • Brauman A, Kane MD, Labat M, Breznak JA (1992) Genesis of acetate and methane by gut bacteria of nutritionally diverse termites. Science 257(5075):1384-1387.
    • (1992) Science , vol.257 , Issue.5075 , pp. 1384-1387
    • Brauman, A.1    Kane, M.D.2    Labat, M.3    Breznak, J.A.4
  • 36
    • 79959616345 scopus 로고    scopus 로고
    • RNA-Seq reveals cooperative metabolic interactions between two termite-gut spirochete species in co-culture
    • Rosenthal AZ, Matson EG, Eldar A, Leadbetter JR (2011) RNA-Seq reveals cooperative metabolic interactions between two termite-gut spirochete species in co-culture. ISME J 5(7):1133-1142.
    • (2011) ISME J , vol.5 , Issue.7 , pp. 1133-1142
    • Rosenthal, A.Z.1    Matson, E.G.2    Eldar, A.3    Leadbetter, J.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.