-
1
-
-
50449101184
-
AL
-
In Staley JT, Bryant MP, Pfennig N, Holt JG (ed), Williams & Wilkins, Baltimore, MD
-
AL, p 476-494. In Staley JT, Bryant MP, Pfennig N, Holt JG (ed), Bergey's manual of systematic bacteriology. Williams & Wilkins, Baltimore, MD.
-
(2005)
Bergey's manual of systematic bacteriology
, pp. 476-494
-
-
Gliesche, C.G.1
Fesefeldt, A.2
Hirsch, P.3
-
2
-
-
0031967850
-
Distribution of denitrification and nitrogen fixation genes in Hyphomicrobium spp. and other budding bacteria
-
Fesefeldt A, Kloos K, Bothe H, Lemmer H, Gliesche CG. 1998. Distribution of denitrification and nitrogen fixation genes in Hyphomicrobium spp. and other budding bacteria. Can J Microbiol 44:181-186. http://dx.doi.org/10.1139/w97-139.
-
(1998)
Can J Microbiol
, vol.44
, pp. 181-186
-
-
Fesefeldt, A.1
Kloos, K.2
Bothe, H.3
Lemmer, H.4
Gliesche, C.G.5
-
3
-
-
0028787903
-
DNA-probing indicates the occurrence of denitrification and nitrogen fixation genes in Hyphomicrobium. Distribution of denitrifying and nitrogen fixing isolates of Hyphomicrobium in a sewage treatment plant
-
Kloos K, Fesefeldt A, Gliesche CG, Bothe H. 1995. DNA-probing indicates the occurrence of denitrification and nitrogen fixation genes in Hyphomicrobium. Distribution of denitrifying and nitrogen fixing isolates of Hyphomicrobium in a sewage treatment plant. FEMS Microbiol Ecol 18:205-213. http://dx.doi.org/10.1111/j.1574-6941.1995.tb00177.x.
-
(1995)
FEMS Microbiol Ecol
, vol.18
, pp. 205-213
-
-
Kloos, K.1
Fesefeldt, A.2
Gliesche, C.G.3
Bothe, H.4
-
4
-
-
0020850328
-
Denitrification with methanol: fundamental study of the growth and denitrification capacity of Hyphomicrobium sp
-
Timmermans P, Van Haute A. 1983. Denitrification with methanol: fundamental study of the growth and denitrification capacity of Hyphomicrobium sp. Water Res 17:1249-1255. http://dx.doi.org/10.1016/0043-1354(83)90249-X.
-
(1983)
Water Res
, vol.17
, pp. 1249-1255
-
-
Timmermans, P.1
Van Haute, A.2
-
5
-
-
0029007133
-
Characterization and description of Hyphomicrobium denitrificans sp. nov
-
Urakami T, Sasaki J, Suzuki K-I, Komagata K. 1995. Characterization and description of Hyphomicrobium denitrificans sp. nov. Int J Syst Bacteriol 45:528-532. http://dx.doi.org/10.1099/00207713-45-3-528.
-
(1995)
Int J Syst Bacteriol
, vol.45
, pp. 528-532
-
-
Urakami, T.1
Sasaki, J.2
Suzuki, K.-I.3
Komagata, K.4
-
6
-
-
0017833397
-
Biology, physiology and biochemistry of Hyphomicrobia
-
Harder W, Attwood MM. 1978. Biology, physiology and biochemistry of Hyphomicrobia. Adv Microb Physiol 17:303-359. http://dx.doi.org/10.1016/S0065-2911(08)60060-0.
-
(1978)
Adv Microb Physiol
, vol.17
, pp. 303-359
-
-
Harder, W.1
Attwood, M.M.2
-
7
-
-
65349194992
-
Impact of varying electron donors on the molecular microbial ecology and biokinetics of methylotrophic denitrifying bacteria
-
Baytshtok V, Lu H, Park H, Kim S, Yu R, Chandran K. 2009. Impact of varying electron donors on the molecular microbial ecology and biokinetics of methylotrophic denitrifying bacteria. Biotechnol Bioeng 102:1527-1536. http://dx.doi.org/10.1002/bit.22213.
-
(2009)
Biotechnol Bioeng
, vol.102
, pp. 1527-1536
-
-
Baytshtok, V.1
Lu, H.2
Park, H.3
Kim, S.4
Yu, R.5
Chandran, K.6
-
8
-
-
33745774127
-
Community structures and activities of nitrifying and denitrifying bacteria in industrial wastewater-treating biofilms
-
Satoh H, Yamakawa T, Kindaichi T, Ito T, Okabe S. 2006. Community structures and activities of nitrifying and denitrifying bacteria in industrial wastewater-treating biofilms. Biotechnol Bioeng 94:762-772. http://dx.doi.org/10.1002/bit.20894.
-
(2006)
Biotechnol Bioeng
, vol.94
, pp. 762-772
-
-
Satoh, H.1
Yamakawa, T.2
Kindaichi, T.3
Ito, T.4
Okabe, S.5
-
9
-
-
84865968220
-
High-rate denitrification using polyethylene glycol gel carriers entrapping heterotrophic denitrifying bacteria
-
Isaka K, Kimura Y, Osaka T, Tsuneda S. 2012. High-rate denitrification using polyethylene glycol gel carriers entrapping heterotrophic denitrifying bacteria. Water Res 46:4941-4948. http://dx.doi.org/10.1016/j.watres.2012.05.050.
-
(2012)
Water Res
, vol.46
, pp. 4941-4948
-
-
Isaka, K.1
Kimura, Y.2
Osaka, T.3
Tsuneda, S.4
-
10
-
-
52949102549
-
Molecular and biokinetic characterization of methylotrophic denitrification using nitrate and nitrite as terminal electron acceptors
-
Baytshtok V, Kim S, Yu R, Park H, Chandran K. 2008. Molecular and biokinetic characterization of methylotrophic denitrification using nitrate and nitrite as terminal electron acceptors. Water Sci Technol 58(2):359-365. http://dx.doi.org/10.2166/wst.2008.391.
-
(2008)
Water Sci Technol
, vol.58
, Issue.2
, pp. 359-365
-
-
Baytshtok, V.1
Kim, S.2
Yu, R.3
Park, H.4
Chandran, K.5
-
11
-
-
0020064009
-
Denitrification
-
Knowles R. 1982. Denitrification. Microbiol Rev 46:43-70.
-
(1982)
Microbiol Rev
, vol.46
, pp. 43-70
-
-
Knowles, R.1
-
12
-
-
0037184270
-
Denitrifying genes in bacterial and archaeal genomes
-
Philippot L. 2002. Denitrifying genes in bacterial and archaeal genomes. Biochim Biophys Acta 1577:355-376. http://dx.doi.org/10.1016/S0167-4781(02)00420-7.
-
(2002)
Biochim Biophys Acta
, vol.1577
, pp. 355-376
-
-
Philippot, L.1
-
13
-
-
0035107176
-
Functional, biochemical and genetic diversity of prokaryotic nitrate reductases
-
Richardson DJ, Berks BC, Russell DA, Spiro S, Taylor CJ. 2001. Functional, biochemical and genetic diversity of prokaryotic nitrate reductases. Cell Mol Life Sci 58:165-178. http://dx.doi.org/10.1007/PL00000845.
-
(2001)
Cell Mol Life Sci
, vol.58
, pp. 165-178
-
-
Richardson, D.J.1
Berks, B.C.2
Russell, D.A.3
Spiro, S.4
Taylor, C.J.5
-
14
-
-
79953239813
-
Microbial nitrate respiration-genes, enzymes and environmental distribution
-
Kraft B, Strous M, Tegetmeyer HE. 2011. Microbial nitrate respiration-genes, enzymes and environmental distribution. J Biotechnol 155:104-117. http://dx.doi.org/10.1016/j.jbiotec.2010.12.025.
-
(2011)
J Biotechnol
, vol.155
, pp. 104-117
-
-
Kraft, B.1
Strous, M.2
Tegetmeyer, H.E.3
-
15
-
-
0037173555
-
Spectroscopic and functional characterization of Cu-containing nitrite reductase from Hyphomicrobium denitrificans A3151
-
Deligeer, Fukunaga R, Kataoka K, Yamaguchi K, Kobayashi K, Tagawa S, Suzuki S. 2002. Spectroscopic and functional characterization of Cu-containing nitrite reductase from Hyphomicrobium denitrificans A3151. J Inorg Biochem 91:132-138. http://dx.doi.org/10.1016/S0162-0134(02)00442-7.
-
(2002)
J Inorg Biochem
, vol.91
, pp. 132-138
-
-
Deligeer1
Fukunaga, R.2
Kataoka, K.3
Yamaguchi, K.4
Kobayashi, K.5
Tagawa, S.6
Suzuki, S.7
-
16
-
-
8444245920
-
Characterization of two type 1 Cu sites of Hyphomicrobium denitrificans nitrite reductase: a new class of copper-containing nitrite reductases
-
Yamaguchi K, Kataoka K, Kobayashi M, Itoh K, Fukui A, Suzuki S. 2004. Characterization of two type 1 Cu sites of Hyphomicrobium denitrificans nitrite reductase: a new class of copper-containing nitrite reductases. Biochemistry 43:14180-14188. http://dx.doi.org/10.1021/bi0492657.
-
(2004)
Biochemistry
, vol.43
, pp. 14180-14188
-
-
Yamaguchi, K.1
Kataoka, K.2
Kobayashi, M.3
Itoh, K.4
Fukui, A.5
Suzuki, S.6
-
17
-
-
34248387742
-
Structure and function of a hexameric copper-containing nitrite reductase
-
Nojiri M, Xie Y, Inoue T, Yamamoto T, Matsumura H, Kataoka K, Deligeer, Yamaguchi K, Kai Y, Suzuki S. 2007. Structure and function of a hexameric copper-containing nitrite reductase. Proc Natl Acad Sci U S A 104:4315-4320. http://dx.doi.org/10.1073/pnas.0609195104.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 4315-4320
-
-
Nojiri, M.1
Xie, Y.2
Inoue, T.3
Yamamoto, T.4
Matsumura, H.5
Kataoka, K.6
Deligeer7
Yamaguchi, K.8
Kai, Y.9
Suzuki, S.10
-
18
-
-
1342304268
-
Characterization of nitrous oxide reductase from a methylotrophic denitrifying bacterium, Hyphomicrobium denitrificans A3151
-
Yamaguchi K, Kawamura A, Ogawa H, Suzuki S. 2003. Characterization of nitrous oxide reductase from a methylotrophic denitrifying bacterium, Hyphomicrobium denitrificans A3151. J Biochem 134:853-858. http://dx.doi.org/10.1093/jb/mvg211.
-
(2003)
J Biochem
, vol.134
, pp. 853-858
-
-
Yamaguchi, K.1
Kawamura, A.2
Ogawa, H.3
Suzuki, S.4
-
19
-
-
36348959091
-
Development of a fed-batch process for the production of a dye-linked formaldehyde dehydrogenase in Hyphomicrobium zavarzinii ZV 580
-
Jérôme V, Hermann M, Hilbrig F, Freitag R. 2007. Development of a fed-batch process for the production of a dye-linked formaldehyde dehydrogenase in Hyphomicrobium zavarzinii ZV 580. Appl Microbiol Biotechnol 77:779-788. http://dx.doi.org/10.1007/s00253-007-1218-z.
-
(2007)
Appl Microbiol Biotechnol
, vol.77
, pp. 779-788
-
-
Jérôme, V.1
Hermann, M.2
Hilbrig, F.3
Freitag, R.4
-
20
-
-
0028228003
-
A novel dye-linked formaldehyde dehydrogenase with some properties indicating the presence of a protein-bound redox-active quinone cofactor
-
Klein CR, Kesseler FP, Perrei C, Frank J, Duine JA, Schwartz AC. 1994. A novel dye-linked formaldehyde dehydrogenase with some properties indicating the presence of a protein-bound redox-active quinone cofactor. Biochem J 301:289-295.
-
(1994)
Biochem J
, vol.301
, pp. 289-295
-
-
Klein, C.R.1
Kesseler, F.P.2
Perrei, C.3
Frank, J.4
Duine, J.A.5
Schwartz, A.C.6
-
21
-
-
84885213963
-
Hyphomicrobium nitrativorans sp. nov., isolated from the biofilm of a methanol-fed denitrification system treating seawater at the Montreal Biodome (Canada)
-
Martineau C, Villeneuve C, Mauffrey F, Villemur R. 2013. Hyphomicrobium nitrativorans sp. nov., isolated from the biofilm of a methanol-fed denitrification system treating seawater at the Montreal Biodome (Canada). Int J Syst Evol Microbiol 63:3777-3781. http://dx.doi.org/10.1099/ijs.0.048124-0.
-
(2013)
Int J Syst Evol Microbiol
, vol.63
, pp. 3777-3781
-
-
Martineau, C.1
Villeneuve, C.2
Mauffrey, F.3
Villemur, R.4
-
22
-
-
84998814304
-
Complete genome sequence of Hyphomicrobium nitrativorans strain NL23, a denitrifying bacterium isolated from biofilm of a methanol-fed denitrification system treating seawater at the Montreal Biodome
-
Martineau C, Villeneuve C, Mauffrey F, Villemur R. 2014. Complete genome sequence of Hyphomicrobium nitrativorans strain NL23, a denitrifying bacterium isolated from biofilm of a methanol-fed denitrification system treating seawater at the Montreal Biodome. Genome Announc 2(1):e01165-13 http://dx.doi.org/10.1128/genomeA.01165-13.
-
(2014)
Genome Announc
, vol.2
, Issue.1
-
-
Martineau, C.1
Villeneuve, C.2
Mauffrey, F.3
Villemur, R.4
-
23
-
-
77957007562
-
Dissimilatory reduction of nitrate in seawater by a Methylophaga strain containing two highly divergent narG sequences
-
Auclair J, Lepine F, Parent S, Villemur R. 2010. Dissimilatory reduction of nitrate in seawater by a Methylophaga strain containing two highly divergent narG sequences. ISME J 4:1302-1313. http://dx.doi.org/10.1038/ismej.2010.47.
-
(2010)
ISME J
, vol.4
, pp. 1302-1313
-
-
Auclair, J.1
Lepine, F.2
Parent, S.3
Villemur, R.4
-
24
-
-
84878879126
-
Methylophaga nitratireducenticrescens sp. nov. and Methylophaga frappieri sp. nov., isolated from the biofilm of the methanol-fed denitrification system treating the seawater at the Montreal Biodome
-
Villeneuve C, Martineau C, Mauffrey F, Villemur R. 2013. Methylophaga nitratireducenticrescens sp. nov. and Methylophaga frappieri sp. nov., isolated from the biofilm of the methanol-fed denitrification system treating the seawater at the Montreal Biodome. Int J Syst Evol Microbiol 63:2216-2222. http://dx.doi.org/10.1099/ijs.0.044545-0.
-
(2013)
Int J Syst Evol Microbiol
, vol.63
, pp. 2216-2222
-
-
Villeneuve, C.1
Martineau, C.2
Mauffrey, F.3
Villemur, R.4
-
25
-
-
80052329732
-
Genome sequences of eight morphologically diverse alphaproteobacteria
-
Brown PJB, Kysela DT, Buechlein A, Hemmerich C, Brun YV. 2011. Genome sequences of eight morphologically diverse alphaproteobacteria. J Bacteriol 193:4567-4568. http://dx.doi.org/10.1128/JB.05453-11.
-
(2011)
J Bacteriol
, vol.193
, pp. 4567-4568
-
-
Brown, P.J.B.1
Kysela, D.T.2
Buechlein, A.3
Hemmerich, C.4
Brun, Y.V.5
-
26
-
-
40549120596
-
The RAST server: rapid annotations using subsystems technology
-
Aziz R, Bartels D, Best A, DeJongh M, Disz T, Edwards R, Formsma K, Gerdes S, Glass E, Kubal M, Meyer F, Olsen G, Olson R, Osterman A, Overbeek R, McNeil L, Paarmann D, Paczian T, Parrello B, Pusch G, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75. http://dx.doi.org/10.1186/1471-2164-9-75.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.1
Bartels, D.2
Best, A.3
DeJongh, M.4
Disz, T.5
Edwards, R.6
Formsma, K.7
Gerdes, S.8
Glass, E.9
Kubal, M.10
Meyer, F.11
Olsen, G.12
Olson, R.13
Osterman, A.14
Overbeek, R.15
McNeil, L.16
Paarmann, D.17
Paczian, T.18
Parrello, B.19
Pusch, G.20
Reich, C.21
Stevens, R.22
Vassieva, O.23
Vonstein, V.24
Wilke, A.25
Zagnitko, O.26
more..
-
27
-
-
84891804612
-
The SEED and the Rapid Annotation of Microbial Genomes Using Subsystems Technology (RAST)
-
Overbeek R, Olson R, Pusch GD, Olsen GJ, Davis JJ, Disz T, Edwards RA, Gerdes S, Parrello B, Shukla M, Vonstein V, Wattam AR, Xia F, Stevens R. 2014. The SEED and the Rapid Annotation of Microbial Genomes Using Subsystems Technology (RAST). Nucleic Acids Res 42: D206-D214. http://dx.doi.org/10.1093/nar/gkt1226.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D206-D214
-
-
Overbeek, R.1
Olson, R.2
Pusch, G.D.3
Olsen, G.J.4
Davis, J.J.5
Disz, T.6
Edwards, R.A.7
Gerdes, S.8
Parrello, B.9
Shukla, M.10
Vonstein, V.11
Wattam, A.R.12
Xia, F.13
Stevens, R.14
-
28
-
-
84891820094
-
IMG 4 version of the integrated microbial genomes comparative analysis system
-
Markowitz VM, Chen I-MA, Palaniappan K, Chu K, Szeto E, Pillay M, Ratner A, Huang J, Woyke T, Huntemann M, Anderson I, Billis K, Varghese N, Mavromatis K, Pati A, Ivanova NN, Kyrpides NC. 2014. IMG 4 version of the integrated microbial genomes comparative analysis system. Nucleic Acids Res 42:D560-D567. http://dx.doi.org/10.1093/nar/gkt963.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D560-D567
-
-
Markowitz, V.M.1
Chen, I.-M.A.2
Palaniappan, K.3
Chu, K.4
Szeto, E.5
Pillay, M.6
Ratner, A.7
Huang, J.8
Woyke, T.9
Huntemann, M.10
Anderson, I.11
Billis, K.12
Varghese, N.13
Mavromatis, K.14
Pati, A.15
Ivanova, N.N.16
Kyrpides, N.C.17
-
29
-
-
77956193448
-
progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement
-
Darling AE, Mau B, Perna NT. 2010. progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One 5:e11147 http://dx.doi.org/10.1371/journal.pone.0011147.
-
(2010)
PLoS One
, vol.5
-
-
Darling, A.E.1
Mau, B.2
Perna, N.T.3
-
30
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
31
-
-
84890330527
-
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0
-
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol 30:2725-2729. http://dx.doi.org/10.1093/molbev/mst197.
-
(2013)
Mol Biol Evol
, vol.30
, pp. 2725-2729
-
-
Tamura, K.1
Stecher, G.2
Peterson, D.3
Filipski, A.4
Kumar, S.5
-
32
-
-
0004253337
-
Handbook of microbiological media
-
4th ed, CRC Press, Boca Raton, FL
-
Atlas RM. 2010. Handbook of microbiological media, 4th ed, vol 1, p 769-868. CRC Press, Boca Raton, FL.
-
(2010)
, vol.1
, pp. 769-868
-
-
Atlas, R.M.1
-
33
-
-
0017294592
-
Acetylene inhibition of nitrous oxide reduction by denitrifying bacteria
-
Yoshinari T, Knowles R. 1976. Acetylene inhibition of nitrous oxide reduction by denitrifying bacteria. Biochem Biophys Res Commun 69:705-710. http://dx.doi.org/10.1016/0006-291X(76)90932-3.
-
(1976)
Biochem Biophys Res Commun
, vol.69
, pp. 705-710
-
-
Yoshinari, T.1
Knowles, R.2
-
34
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
In Misener S, Krawetz S (ed), Humana Press, Totowa, NJ
-
Rozen S, Skaletsky H. 1999. Primer3 on the WWW for general users and for biologist programmers, p 365-386. In Misener S, Krawetz S (ed), Bioinformatics methods and protocols, vol 132. Humana Press, Totowa, NJ.
-
(1999)
Bioinformatics methods and protocols
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
35
-
-
34547591343
-
Primer3Plus, an enhanced Web interface to Primer3
-
Untergasser A, Nijveen H, Rao X, Bisseling T, Geurts R, Leunissen JAM. 2007. Primer3Plus, an enhanced Web interface to Primer3. Nucleic Acids Res 35:W71-W74. http://dx.doi.org/10.1093/nar/gkm306.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. W71-W74
-
-
Untergasser, A.1
Nijveen, H.2
Rao, X.3
Bisseling, T.4
Geurts, R.5
Leunissen, J.A.M.6
-
37
-
-
0037129827
-
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
-
RESEARCH0034
-
Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F. 2002. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 3:RESEARCH0034. http://dx.doi.org/10.1186/gb-2002-3-7-research0034.
-
(2002)
Genome Biol
, vol.3
-
-
Vandesompele, J.1
De Preter, K.2
Pattyn, F.3
Poppe, B.4
Van Roy, N.5
De Paepe, A.6
Speleman, F.7
-
38
-
-
3442876969
-
Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
-
Andersen CL, Jensen JL, Orntoft TF. 2004. Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res 64:5245-5250. http://dx.doi.org/10.1158/0008-5472.CAN-04-0496.
-
(2004)
Cancer Res
, vol.64
, pp. 5245-5250
-
-
Andersen, C.L.1
Jensen, J.L.2
Orntoft, T.F.3
-
39
-
-
1842483281
-
Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-Excel-based tool using pair-wise correlations
-
Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP. 2004. Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-Excel-based tool using pair-wise correlations. Biotechnol Lett 26:509-515. http://dx.doi.org/10.1023/B:BILE.0000019559.84305.47.
-
(2004)
Biotechnol Lett
, vol.26
, pp. 509-515
-
-
Pfaffl, M.W.1
Tichopad, A.2
Prgomet, C.3
Neuvians, T.P.4
-
40
-
-
33750295976
-
Selection of housekeeping genes for gene expression studies in human reticulocytes using real-time PCR
-
Silver N, Best S, Jiang J, Thein SL. 2006. Selection of housekeeping genes for gene expression studies in human reticulocytes using real-time PCR. BMC Mol Biol 7:33. http://dx.doi.org/10.1186/1471-2199-7-33.
-
(2006)
BMC Mol Biol
, vol.7
, pp. 33
-
-
Silver, N.1
Best, S.2
Jiang, J.3
Thein, S.L.4
-
41
-
-
53849131672
-
Interdependence of two NarK domains in a fused nitrate/nitrite transporter
-
Goddard AD, Moir JWB, Richardson DJ, Ferguson SJ. 2008. Interdependence of two NarK domains in a fused nitrate/nitrite transporter. Mol Microbiol 70:667-681. http://dx.doi.org/10.1111/j.1365-2958.2008.06436.x.
-
(2008)
Mol Microbiol
, vol.70
, pp. 667-681
-
-
Goddard, A.D.1
Moir, J.W.B.2
Richardson, D.J.3
Ferguson, S.J.4
-
42
-
-
0642346959
-
Aerobic and anaerobic nitrate and nitrite reduction in free-living cells of Bradyrhizobium sp. (Lupinus)
-
Polcyn W, Luciński R. 2003. Aerobic and anaerobic nitrate and nitrite reduction in free-living cells of Bradyrhizobium sp. (Lupinus). FEMS Microbiol Lett 226:331-337. http://dx.doi.org/10.1016/S0378-1097(03)00620-7.
-
(2003)
FEMS Microbiol Lett
, vol.226
, pp. 331-337
-
-
Polcyn, W.1
Luciński, R.2
-
43
-
-
0029636515
-
Competition between nitrate and nitrite reduction in denitrification by Pseudomonas fluorescens
-
Almeida JS, Reis MAM, Carrondo MJT. 1995. Competition between nitrate and nitrite reduction in denitrification by Pseudomonas fluorescens. Biotechnol Bioeng 46:476-484. http://dx.doi.org/10.1002/bit.260460512.
-
(1995)
Biotechnol Bioeng
, vol.46
, pp. 476-484
-
-
Almeida, J.S.1
Reis, M.A.M.2
Carrondo, M.J.T.3
-
44
-
-
0030200160
-
Kinetics of denitrification by Pseudomonas denitrificans under growth conditions limited by carbon and/or nitrate or nitrite
-
Kornaros M, Zafiri C, Lyberatos G. 1996. Kinetics of denitrification by Pseudomonas denitrificans under growth conditions limited by carbon and/or nitrate or nitrite. Water Environ Res 68:934-945. http://dx.doi.org/10.2175/106143096X127947.
-
(1996)
Water Environ Res
, vol.68
, pp. 934-945
-
-
Kornaros, M.1
Zafiri, C.2
Lyberatos, G.3
-
45
-
-
35348819939
-
Genomic analysis reveals widespread occurrence of new classes of copper nitrite reductases
-
Ellis MJ, Grossmann JG, Eady RR, Hasnain SS. 2007. Genomic analysis reveals widespread occurrence of new classes of copper nitrite reductases. J Biol Inorg Chem 12:1119-1127. http://dx.doi.org/10.1007/s00775-007-0282-2.
-
(2007)
J Biol Inorg Chem
, vol.12
, pp. 1119-1127
-
-
Ellis, M.J.1
Grossmann, J.G.2
Eady, R.R.3
Hasnain, S.S.4
-
46
-
-
84876550671
-
Impacts of nitrate and nitrite on physiology of Shewanella oneidensis
-
Zhang H, Fu H, Wang J, Sun L, Jiang Y, Zhang L, Gao H. 2013. Impacts of nitrate and nitrite on physiology of Shewanella oneidensis. PLoS One 8:e62629. http://dx.doi.org/10.1371/journal.pone.0062629.
-
(2013)
PLoS One
, vol.8
-
-
Zhang, H.1
Fu, H.2
Wang, J.3
Sun, L.4
Jiang, Y.5
Zhang, L.6
Gao, H.7
-
48
-
-
0036182372
-
Periplasmic nitrate reductase (NapABC enzyme) supports anaerobic respiration by Escherichia coli K-12
-
Stewart V, Lu Y, Darwin AJ. 2002. Periplasmic nitrate reductase (NapABC enzyme) supports anaerobic respiration by Escherichia coli K-12. J Bacteriol 184:1314-1323. http://dx.doi.org/10.1128/JB.184.5.1314-1323.2002.
-
(2002)
J Bacteriol
, vol.184
, pp. 1314-1323
-
-
Stewart, V.1
Lu, Y.2
Darwin, A.J.3
-
49
-
-
0033571051
-
Competition between Escherichia coli strains expressing either a periplasmic or a membrane-bound nitrate reductase: does Nap confer a selective advantage during nitrate-limited growth?
-
Potter LC, Millington P, Griffiths L, Thomas GH, Cole JA. 1999. Competition between Escherichia coli strains expressing either a periplasmic or a membrane-bound nitrate reductase: does Nap confer a selective advantage during nitrate-limited growth? Biochem J 344:77-84. http://dx.doi.org/10.1042/0264-6021:3440077.
-
(1999)
Biochem J
, vol.344
, pp. 77-84
-
-
Potter, L.C.1
Millington, P.2
Griffiths, L.3
Thomas, G.H.4
Cole, J.A.5
-
50
-
-
0031856846
-
Fnr, NarP, and NarL regulation of Escherichia coli K-12 napF (periplasmic nitrate reductase) operon transcription in vitro
-
Darwin AJ, Ziegelhoffer EC, Kiley PJ, Stewart V. 1998. Fnr, NarP, and NarL regulation of Escherichia coli K-12 napF (periplasmic nitrate reductase) operon transcription in vitro. J Bacteriol 180:4192-4198.
-
(1998)
J Bacteriol
, vol.180
, pp. 4192-4198
-
-
Darwin, A.J.1
Ziegelhoffer, E.C.2
Kiley, P.J.3
Stewart, V.4
-
51
-
-
0032835980
-
The napF and narG nitrate reductase operons in Escherichia coli are differentially expressed in response to submicromolar concentrations of nitrate but not nitrite
-
Wang H, Tseng C-P, Gunsalus RP. 1999. The napF and narG nitrate reductase operons in Escherichia coli are differentially expressed in response to submicromolar concentrations of nitrate but not nitrite. J Bacteriol 181:5303-5308.
-
(1999)
J Bacteriol
, vol.181
, pp. 5303-5308
-
-
Wang, H.1
Tseng, C.-P.2
Gunsalus, R.P.3
-
52
-
-
0025333241
-
Periplasmic and membrane-bound respiratory nitrate reductases in Thiosphaera pantotropha: the periplasmic enzyme catalyzes the first step in aerobic denitrification
-
Bell LC, Richardson DJ, Ferguson SJ. 1990. Periplasmic and membrane-bound respiratory nitrate reductases in Thiosphaera pantotropha: the periplasmic enzyme catalyzes the first step in aerobic denitrification. FEBS Lett 265:85-87. http://dx.doi.org/10.1016/0014-5793(90)80889-Q.
-
(1990)
FEBS Lett
, vol.265
, pp. 85-87
-
-
Bell, L.C.1
Richardson, D.J.2
Ferguson, S.J.3
-
53
-
-
0033709553
-
Control of periplasmic nitrate reductase gene expression (napEDABC) from Paracoccus pantotrophus in response to oxygen and carbon substrates
-
Sears HJ, Sawers G, Berks BC, Ferguson SJ, Richardson DJ. 2000. Control of periplasmic nitrate reductase gene expression (napEDABC) from Paracoccus pantotrophus in response to oxygen and carbon substrates. Microbiology 146:2977-2985.
-
(2000)
Microbiology
, vol.146
, pp. 2977-2985
-
-
Sears, H.J.1
Sawers, G.2
Berks, B.C.3
Ferguson, S.J.4
Richardson, D.J.5
-
54
-
-
84555195309
-
Physiological roles for two periplasmic nitrate reductases in Rhodobacter sphaeroides 2.4.3 (ATCC 17025)
-
Hartsock A, Shapleigh JP. 2011. Physiological roles for two periplasmic nitrate reductases in Rhodobacter sphaeroides 2.4.3 (ATCC 17025). J Bacteriol 193:6483-6489. http://dx.doi.org/10.1128/JB.05324-11.
-
(2011)
J Bacteriol
, vol.193
, pp. 6483-6489
-
-
Hartsock, A.1
Shapleigh, J.P.2
-
55
-
-
76449102157
-
The periplasmic nitrate reductase in Shewanella: the resolution, distribution and functional implications of two NAP isoforms, NapEDABC and NapDAGHB
-
Simpson PJL, Richardson DJ, Codd R. 2010. The periplasmic nitrate reductase in Shewanella: the resolution, distribution and functional implications of two NAP isoforms, NapEDABC and NapDAGHB. Microbiology 156:302-312. http://dx.doi.org/10.1099/mic.0.034421-0.
-
(2010)
Microbiology
, vol.156
, pp. 302-312
-
-
Simpson, P.J.L.1
Richardson, D.J.2
Codd, R.3
-
56
-
-
79955064482
-
Physiological and evolutionary studies of NAP systems in Shewanella piezotolerans WP3
-
Chen Y, Wang F, Xu J, Mehmood MA, Xiao X. 2011. Physiological and evolutionary studies of NAP systems in Shewanella piezotolerans WP3. ISME J 5:843-855. http://dx.doi.org/10.1038/ismej.2010.182.
-
(2011)
ISME J
, vol.5
, pp. 843-855
-
-
Chen, Y.1
Wang, F.2
Xu, J.3
Mehmood, M.A.4
Xiao, X.5
-
57
-
-
84868311632
-
Complete genome sequences of Methylophaga sp. strain JAM1 and Methylophaga sp. strain JAM7
-
Villeneuve C, Martineau C, Mauffrey F, Villemur R. 2012. Complete genome sequences of Methylophaga sp. strain JAM1 and Methylophaga sp. strain JAM7. J Bacteriol 194:4126-4127. http://dx.doi.org/10.1128/JB.00726-12.
-
(2012)
J Bacteriol
, vol.194
, pp. 4126-4127
-
-
Villeneuve, C.1
Martineau, C.2
Mauffrey, F.3
Villemur, R.4
-
58
-
-
0346252346
-
The Bradyrhizobium japonicum napEDABC genes encoding the periplasmic nitrate reductase are essential for nitrate respiration
-
Delgado MJ, Bonnard N, Tresierra-Ayala A, Bedmar EJ, Müller P. 2003. The Bradyrhizobium japonicum napEDABC genes encoding the periplasmic nitrate reductase are essential for nitrate respiration. Microbiology 149:3395-3403. http://dx.doi.org/10.1099/mic.0.26620-0.
-
(2003)
Microbiology
, vol.149
, pp. 3395-3403
-
-
Delgado, M.J.1
Bonnard, N.2
Tresierra-Ayala, A.3
Bedmar, E.J.4
Müller, P.5
-
59
-
-
23744475357
-
Expression of nitrite and nitric oxide reductases in free-living and plant-associated Agrobacterium tumefaciens C58 cells
-
Baek SH, Shapleigh JP. 2005. Expression of nitrite and nitric oxide reductases in free-living and plant-associated Agrobacterium tumefaciens C58 cells. Appl Environ Microbiol 71:4427-4436. http://dx.doi.org/10.1128/AEM.71.8.4427-4436.2005.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 4427-4436
-
-
Baek, S.H.1
Shapleigh, J.P.2
-
60
-
-
0031047127
-
Characterization and regulation of the gene encoding nitrite reductase in Rhodobacter sphaeroides 2.4.3
-
Tosques IE, Kwiatkowski AV, Shi J, Shapleigh JP. 1997. Characterization and regulation of the gene encoding nitrite reductase in Rhodobacter sphaeroides 2.4.3. J Bacteriol 179:1090-1095.
-
(1997)
J Bacteriol
, vol.179
, pp. 1090-1095
-
-
Tosques, I.E.1
Kwiatkowski, A.V.2
Shi, J.3
Shapleigh, J.P.4
-
61
-
-
0035980280
-
Characterization of the nirK gene encoding the respiratory, Cu-containing nitrite reductase of Bradyrhizobium japonicum
-
Velasco L, Mesa S, Delgado MJ, Bedmar EJ. 2001. Characterization of the nirK gene encoding the respiratory, Cu-containing nitrite reductase of Bradyrhizobium japonicum. Biochim Biophys Acta 1521:130-134. http://dx.doi.org/10.1016/S0167-4781(01)00279-2.
-
(2001)
Biochim Biophys Acta
, vol.1521
, pp. 130-134
-
-
Velasco, L.1
Mesa, S.2
Delgado, M.J.3
Bedmar, E.J.4
-
62
-
-
0346849873
-
Site-directed mutagenesis of NnrR: a transcriptional regulator of nitrite and nitric oxide reductase in Rhodobacter sphaeroides
-
Laratta WP, Shapleigh JP. 2003. Site-directed mutagenesis of NnrR: a transcriptional regulator of nitrite and nitric oxide reductase in Rhodobacter sphaeroides. FEMS Microbiol Lett 229:173-178. http://dx.doi.org/10.1016/S0378-1097(03)00821-8.
-
(2003)
FEMS Microbiol Lett
, vol.229
, pp. 173-178
-
-
Laratta, W.P.1
Shapleigh, J.P.2
|