Methylophaga nitratireducenticrescens sp. nov. and Methylophaga frappieri sp. nov., isolated from the biofilm of the methanol-fed denitrification system treating the seawater at the Montreal Biodome

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART6, 2013, Pages 2216-2222

  Villeneuve, Céline ^a   Martineau, Christine ^a   Mauffrey, Florian ^a   Villemur, Richard ^a  

^a INRS INSTITUT ARMAND FRAPPIER   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; FATTY ACID; METHANOL; NITRATE REDUCTASE; NITRIC OXIDE REDUCTASE; NITRITE REDUCTASE; NITROUS OXIDE REDUCTASE; RIBULOSE PHOSPHATE; RNA 16S; SEA WATER; SODIUM CHLORIDE;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; BIOFILM; CANADA; CONTROLLED STUDY; DENITRIFICATION; DNA CONTENT; GAMMAPROTEOBACTERIA; GENE CLUSTER; GENE SEQUENCE; METHYLOPHAGA FRAPPIERI; METHYLOPHAGA NITRATIREDUCENTICRESCENS; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; OPERON; PH; PRIORITY JOURNAL; RNA ANALYSIS; RNA SEQUENCE;

BACTERIA (MICROORGANISMS); GAMMAPROTEOBACTERIA; METHYLOPHAGA;

EID: 84878879126     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.044545-0     Document Type: Article

References (20)

1. Antony, C. P., Doronina, N. V., Boden, R., Trotsenko, Y. A., Shouche, Y. S. & Murrell, J. C. (2012). Methylophaga lonarensis sp. nov., a moderately haloalkaliphilic methylotroph isolated from the soda lake sediments of a meteorite impact crater. Int J Syst Evol Microbiol 62, 1613-1618.
2. Auclair, J., Lépine, F., Parent, S. & Villemur, R. (2010). Dissimilatory reduction of nitrate in seawater by a Methylophaga strain containing two highly divergent narG sequences. ISME J 4, 1302-1313.
3. Aziz, R. K., Bartels, D., Best, A. A., DeJongh, M., Disz, T., Edwards, R. A., Formsma, K., Gerdes, S., Glass, E. M. & other authors (2008). The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9, 75.
4. Boden, R. (2012). Emended description of the genus Methylophaga Janvier et al. 1985. Int J Syst Evol Microbiol 62, 1644-1646.
5. Boden, R., Kelly, D. P., Murrell, J. C. & Schäfer, H. (2010). Oxidation of dimethylsulfide to tetrathionate by Methylophaga thiooxidans sp. nov.: a new link in the sulfur cycle. Environ Microbiol 12, 2688-2699.
6. Boden, R., Ferriera, S., Johnson, J., Kelly, D. P., Murrell, J. C. & Schäfer, H. (2011). Draft genome sequence of the chemolithoheterotrophic, halophilic methylotroph Methylophaga thiooxydans DMS010. J Bacteriol 193, 3154-3155.
7. Brudno, M., Do, C. B., Cooper, G. M., Kim, M. F., Davydov, E., Green, E. D., Sidow, A., Batzoglou, S. & NISC Comparative Sequencing Program (2003). LAGAN and Multi-LAGAN: efficient tools for largescale multiple alignment of genomic DNA. Genome Res 13, 721-731.
8. de Zwart, J. M., Nelisse, P. N. & Kuenen, J. G. (1996). Isolation and characterization of Methylophaga sulfidovorans sp. nov.: An obligately methylotrophic, aerobic, dimethylsulfide oxidizing bacterium from a microbial mat. FEMS Microbiol Ecol 20, 261-270.
9. Doronina, N. V., Krauzova, V. I. & Trotsenko, Y. A. (1997). Methylophaga limanica sp. nov.: A new species of moderately halophilic, aerobic, methylotrophic bacteria. Microbiology 66, 434-439.
10. Doronina, N., Darmaeva, T. & Trotsenko, Y. (2003a). Methylophaga natronica sp. nov., a new alkaliphilic and moderately halophilic, restricted-facultatively methylotrophic bacterium from soda lake of the Southern Transbaikal region. Syst Appl Microbiol 26, 382-389.
11. Doronina, N. V., Darmaeva, T. D. & Trotsenko, Y. A. (2003b). Methylophaga alcalica sp. nov., a novel alkaliphilic and moderately halophilic, obligately methylotrophic bacterium from an East Mongolian saline soda lake. Int J Syst Evol Microbiol 53, 223-229.
12. Doronina, N. V., Li, Ts D., Ivanova, E. G. & Trotsenko, IuA. (2005). [Methylophaga murata sp. nov.: a haloalkaliphilic aerobic methylotroph from deteriorating marble]. Mikrobiologiia 74, 511-519.
13. Felsenstein, J. (1989). PHYLIP phylogeny inference package. Cladistics 5, 164-166.
14. Frazer, K. A., Pachter, L., Poliakov, A., Rubin, E. M. & Dubchak, I. (2004). VISTA: computational tools for comparative genomics. Nucleic Acids Res 32 (Web Server issue), W273-279.
15. Goris, J., Konstantinidis, K. T., Klappenbach, J. A., Coenye, T., Vandamme, P. & Tiedje, J. M. (2007). DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol 57, 81-91.
16. Janvier, M., Frehel, C., Grimont, F. & Gasser, F. (1985). Methylophaga marina gen. nov., sp. nov. and Methylophaga thalassica sp. nov., marine methylotrophs. Int J Syst Bacteriol 35, 131-139.
17. Kim, H. G., Doronina, N. V., Trotsenko, Y. A. & Kim, S. W. (2007). Methylophaga aminisulfidivorans sp. nov., a restricted facultatively methylotrophic marine bacterium. Int J Syst Evol Microbiol 57, 2096-2101.
18. Li, TsD., Doronina, N. V., Ivanova, E. G. & Trotsenko, IuA. (2007). [Vitamin B12-independent strains of Methylophaga marina isolated from Red Sea algae]. Mikrobiologiia 76, 88-94.
19. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
20. Villeneuve, C., Martineau, C., Mauffrey, F. & Villemur, R. (2012). Complete genome sequences of Methylophaga sp. strain JAM1 and Methylophaga sp. strain JAM7. J Bacteriol 194, 4126-4127.