메뉴 건너뛰기




Volumn 2015, Issue , 2015, Pages

Assessing Computational Steps for CLIP-Seq Data Analysis

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; RNA BINDING PROTEIN; MICRORNA;

EID: 84936879926     PISSN: 23146133     EISSN: 23146141     Source Type: Journal    
DOI: 10.1155/2015/196082     Document Type: Article
Times cited : (7)

References (54)
  • 1
    • 44449166478 scopus 로고    scopus 로고
    • RNAbinding proteins and post-transcriptional gene regulation
    • T. Glisovic, J. L. Bachorik, J. Yong, and G. Dreyfuss, "RNAbinding proteins and post-transcriptional gene regulation," FEBS Letters, vol. 582, no. 14, pp. 1977-1986, 2008.
    • (2008) FEBS Letters , vol.582 , Issue.14 , pp. 1977-1986
    • Glisovic, T.1    Bachorik, J.L.2    Yong, J.3    Dreyfuss, G.4
  • 2
    • 84934437354 scopus 로고    scopus 로고
    • CLIP: Crosslinking and immunoprecipitation of in vivo RNA targets of RNA-binding proteins
    • K. B. Jensen and R. B. Darnell, "CLIP: crosslinking and immunoprecipitation of in vivo RNA targets of RNA-binding proteins," Methods in Molecular Biology, vol. 488, pp. 85-98, 2008.
    • (2008) Methods in Molecular Biology , vol.488 , pp. 85-98
    • Jensen, K.B.1    Darnell, R.B.2
  • 3
    • 27944508215 scopus 로고    scopus 로고
    • CLIP: A method for identifying protein-RNA interaction sites in living cells
    • J. Ule, K. Jensen, A. Mele, and R. B. Darnell, "CLIP: a method for identifying protein-RNA interaction sites in living cells," Methods, vol. 37, no. 4, pp. 376-386, 2005.
    • (2005) Methods , vol.37 , Issue.4 , pp. 376-386
    • Ule, J.1    Jensen, K.2    Mele, A.3    Darnell, R.B.4
  • 4
    • 0242497663 scopus 로고    scopus 로고
    • CLIP identifies Nova-regulated RNA networks in the brain
    • J. Ule, K. B. Jensen, M. Ruggiu, A. Mele, A. Ule, and R. B. Darnell, "CLIP identifies Nova-regulated RNA networks in the brain," Science, vol. 302, no. 5648, pp. 1212-1215, 2003.
    • (2003) Science , vol.302 , Issue.5648 , pp. 1212-1215
    • Ule, J.1    Jensen, K.B.2    Ruggiu, M.3    Mele, A.4    Ule, A.5    Darnell, R.B.6
  • 5
    • 34447115822 scopus 로고    scopus 로고
    • The multifunctional RNA-binding protein hnRNP A1 is required for processing of MIR-18a
    • S. Guil and J. F. Cáceres, "The multifunctional RNA-binding protein hnRNP A1 is required for processing of miR-18a," Nature Structural and Molecular Biology, vol. 14, no. 7, pp. 591-596, 2007.
    • (2007) Nature Structural and Molecular Biology , vol.14 , Issue.7 , pp. 591-596
    • Guil, S.1    Cáceres, J.F.2
  • 6
    • 54849438715 scopus 로고    scopus 로고
    • Identification of nuclear and cytoplasmic mRNA targets for the shuttling protein SF2/ASF
    • J. R. Sanford, P. Coutinho, J. A. Hackett, X. Wang, W. Ranahan, and J. F. Caceres, "Identification of nuclear and cytoplasmic mRNA targets for the shuttling protein SF2/ASF," PLoS ONE, vol. 3, no. 10, Article ID e3369, 2008.
    • (2008) PLoS ONE , vol.3 , Issue.10
    • Sanford, J.R.1    Coutinho, P.2    Hackett, J.A.3    Wang, X.4    Ranahan, W.5    Caceres, J.F.6
  • 7
    • 33845901779 scopus 로고    scopus 로고
    • The RNA-binding protein Rrm4 id essential for polarity in Ustilago maydis and shuttles alongmicrotubules
    • P. Becht, J. König, and M. Feldbrügge, "The RNA-binding protein Rrm4 id essential for polarity in Ustilago maydis and shuttles alongmicrotubules," Journal of Cell Science, vol. 119, no. 23, pp. 4964-4973, 2006.
    • (2006) Journal of Cell Science , vol.119 , Issue.23 , pp. 4964-4973
    • Becht, P.1    König, J.2    Feldbrügge, M.3
  • 8
    • 70149112363 scopus 로고    scopus 로고
    • RNA gain-offunction in spinocerebellar ataxia type 8
    • R. S. Daughters, D. L. Tuttle, W. Gao et al., "RNA gain-offunction in spinocerebellar ataxia type 8," PLoS Genetics, vol. 5, no. 8, Article ID e1000600, 2009.
    • (2009) PLoS Genetics , vol.5 , Issue.8
    • Daughters, R.S.1    Tuttle, D.L.2    Gao, W.3
  • 11
    • 77953928753 scopus 로고    scopus 로고
    • HITS-CLIP: Panoramic views of protein-RNA regulation in living cells
    • R. B. Darnell, "HITS-CLIP: panoramic views of protein-RNA regulation in living cells," Wiley Interdisciplinary Reviews: RNA, vol. 1, no. 2, pp. 266-286, 2010.
    • (2010) Wiley Interdisciplinary Reviews: RNA , vol.1 , Issue.2 , pp. 266-286
    • Darnell, R.B.1
  • 12
    • 56549105330 scopus 로고    scopus 로고
    • HITS-CLIP yields genome-wide insights into brain alternative RNA processing
    • D. D. Licatalosi, A. Mele, J. J. Fak et al., "HITS-CLIP yields genome-wide insights into brain alternative RNA processing," Nature, vol. 456, no. 7221, pp. 464-469, 2008.
    • (2008) Nature , vol.456 , Issue.7221 , pp. 464-469
    • Licatalosi, D.D.1    Mele, A.2    Fak, J.J.3
  • 13
    • 72149117411 scopus 로고    scopus 로고
    • Genome-wide analysis of PTBRNA interactions reveals a strategy used by the general splicing repressor to modulate exon inclusion or skipping
    • Y. Xue, Y. Zhou, T. Wu et al., "Genome-wide analysis of PTBRNA interactions reveals a strategy used by the general splicing repressor to modulate exon inclusion or skipping," Molecular Cell, vol. 36, no. 6, pp. 996-1006, 2009.
    • (2009) Molecular Cell , vol.36 , Issue.6 , pp. 996-1006
    • Xue, Y.1    Zhou, Y.2    Wu, T.3
  • 14
    • 67749132423 scopus 로고    scopus 로고
    • Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps
    • S. W. Chi, J. B. Zang, A. Mele, and R. B. Darnell, "Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps," Nature, vol. 460, no. 7254, pp. 479-486, 2009.
    • (2009) Nature , vol.460 , Issue.7254 , pp. 479-486
    • Chi, S.W.1    Zang, J.B.2    Mele, A.3    Darnell, R.B.4
  • 15
    • 59649107040 scopus 로고    scopus 로고
    • An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells
    • G. W. Yeo, N. G. Coufal, T. Y. Liang, G. E. Peng, X. D. Fu, and F. H. Gage, "An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells," Nature Structural and Molecular Biology, vol. 16, no. 2, pp. 130-137, 2009.
    • (2009) Nature Structural and Molecular Biology , vol.16 , Issue.2 , pp. 130-137
    • Yeo, G.W.1    Coufal, N.G.2    Liang, T.Y.3    Peng, G.E.4    Fu, X.D.5    Gage, F.H.6
  • 16
    • 84899667216 scopus 로고    scopus 로고
    • PAR-CLIP (Photoactivatable ribonucleoside-enhanced crosslinking and immunoprecipitation): A step-by-step protocol to the transcriptomewide identification of binding sites of RNA-binding proteins
    • J. Spitzer, M. Hafner, M. Landthaler et al., "PAR-CLIP (Photoactivatable Ribonucleoside-Enhanced Crosslinking and Immunoprecipitation): a step-by-step protocol to the transcriptomewide identification of binding sites of RNA-binding proteins," Methods in Enzymology, vol. 539, pp. 113-161, 2014.
    • (2014) Methods in Enzymology , vol.539 , pp. 113-161
    • Spitzer, J.1    Hafner, M.2    Landthaler, M.3
  • 17
    • 84870026823 scopus 로고    scopus 로고
    • Genome-wide identification of miRNA targets by PAR-CLIP
    • M. Hafner, S. Lianoglou, T. Tuschl, and D. Betel, "Genome-wide identification of miRNA targets by PAR-CLIP," Methods, vol. 58, no. 2, pp. 94-105, 2012.
    • (2012) Methods , vol.58 , Issue.2 , pp. 94-105
    • Hafner, M.1    Lianoglou, S.2    Tuschl, T.3    Betel, D.4
  • 19
    • 80055101895 scopus 로고    scopus 로고
    • PAR-CliP-A method to identify transcriptome-wide the binding sites of RNA binding proteins
    • M. Hafner, M. Landthaler, L. Burger et al., "PAR-CliP-a method to identify transcriptome-wide the binding sites of RNA binding proteins," Journal of Visualized Experiments, no. 41, Article ID e2034, 2010.
    • (2010) Journal of Visualized Experiments , Issue.41
    • Hafner, M.1    Landthaler, M.2    Burger, L.3
  • 20
    • 77950920903 scopus 로고    scopus 로고
    • Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
    • M. Hafner, M. Landthaler, L. Burger et al., "Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP," Cell, vol. 141, no. 1, pp. 129-141, 2010.
    • (2010) Cell , vol.141 , Issue.1 , pp. 129-141
    • Hafner, M.1    Landthaler, M.2    Burger, L.3
  • 21
    • 84934444353 scopus 로고    scopus 로고
    • Global protein-RNA interaction mapping at single nucleotide resolution by iCLIP-Seq
    • C. Yao, L. Weng, and Y. Shi, "Global protein-RNA interaction mapping at single nucleotide resolution by iCLIP-Seq," Methods in Molecular Biology, vol. 1126, pp. 399-410, 2014.
    • (2014) Methods in Molecular Biology , vol.1126 , pp. 399-410
    • Yao, C.1    Weng, L.2    Shi, Y.3
  • 22
    • 84894233636 scopus 로고    scopus 로고
    • ICLIP: Protein-RNA interactions at nucleotide resolution
    • I. Huppertz, J. Attig, A.D'Ambrogio et al., "iCLIP: protein-RNA interactions at nucleotide resolution," Methods, vol. 65, no. 3, pp. 274-287, 2014.
    • (2014) Methods , vol.65 , Issue.3 , pp. 274-287
    • Huppertz, I.1    Attig, J.2    D'Ambrogio, A.3
  • 23
    • 84936744064 scopus 로고    scopus 로고
    • Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
    • Y. Sugimoto, J. König, S. Hussain et al., "Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions," Genome Biology, vol. 13, no. 8, article R67, 2012.
    • (2012) Genome Biology , vol.13 , Issue.8
    • Sugimoto, Y.1    König, J.2    Hussain, S.3
  • 24
    • 80455179726 scopus 로고    scopus 로고
    • ICLIP-transcriptomewide mapping of protein-RNA interactions with individual nucleotide resolution
    • J. Konig, K. Zarnack, G. Rot et al., "iCLIP-transcriptomewide mapping of protein-RNA interactions with individual nucleotide resolution," Journal of Visualized Experiments, no. 50, Article ID e2638, 2011.
    • (2011) Journal of Visualized Experiments , Issue.50
    • Konig, J.1    Zarnack, K.2    Rot, G.3
  • 25
    • 78149393552 scopus 로고    scopus 로고
    • ICLIP predicts the dual splicing effects of TIA-RNA interactions
    • Z. Wang, M. Kayikci, M. Briese et al., "iCLIP predicts the dual splicing effects of TIA-RNA interactions," PLoS Biology, vol. 8, no. 10, 2010.
    • (2010) PLoS Biology , vol.8 , Issue.10
    • Wang, Z.1    Kayikci, M.2    Briese, M.3
  • 26
    • 77954387023 scopus 로고    scopus 로고
    • ICLIPreveals the functionof hnRNP particles in splicing at individual nucleotide resolution
    • J. König, K. Zarnack, G. Rot et al., "iCLIPreveals the functionof hnRNP particles in splicing at individual nucleotide resolution," Nature Structural & Molecular Biology, vol. 17, no. 7, pp.909-915, 2010.
    • (2010) Nature Structural & Molecular Biology , vol.17 , Issue.7 , pp. 909-915
    • König, J.1    Zarnack, K.2    Rot, G.3
  • 27
    • 84869086143 scopus 로고    scopus 로고
    • LIN28A is a suppressor of ER-associated translation in embryonic stem cells
    • J. Cho, H. Chang, S. C. Kwon et al., "LIN28A is a suppressor of ER-associated translation in embryonic stem cells," Cell, vol. 151, no. 4, pp. 765-777, 2012.
    • (2012) Cell , vol.151 , Issue.4 , pp. 765-777
    • Cho, J.1    Chang, H.2    Kwon, S.C.3
  • 28
    • 78649714014 scopus 로고    scopus 로고
    • Analysis and design of RNA sequencing experiments for identifying isoform regulation
    • Y. Katz, E. T. Wang, E.M. Airoldi, and C. B. Burge, "Analysis and design of RNA sequencing experiments for identifying isoform regulation," Nature Methods, vol. 7, no. 12, pp. 1009-1015, 2010.
    • (2010) Nature Methods , vol.7 , Issue.12 , pp. 1009-1015
    • Katz, Y.1    Wang, E.T.2    Airoldi, E.M.3    Burge, C.B.4
  • 29
    • 79959813870 scopus 로고    scopus 로고
    • A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins
    • S. Kishore, L. Jaskiewicz, L. Burger, J. Hausser, M. Khorshid, and M. Zavolan, "A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins," Nature Methods, vol. 8, no. 7, pp. 559-564, 2011.
    • (2011) Nature Methods , vol.8 , Issue.7 , pp. 559-564
    • Kishore, S.1    Jaskiewicz, L.2    Burger, L.3    Hausser, J.4    Khorshid, M.5    Zavolan, M.6
  • 30
    • 79551647673 scopus 로고    scopus 로고
    • Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs
    • A. K. Leung, A. G. Young, A. Bhutkar et al., "Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs," Nature Structural & Molecular Biology, vol. 18, no. 2, pp. 237-244, 2011.
    • (2011) Nature Structural & Molecular Biology , vol.18 , Issue.2 , pp. 237-244
    • Leung, A.K.1    Young, A.G.2    Bhutkar, A.3
  • 31
    • 84885896439 scopus 로고    scopus 로고
    • LIN28B promotes growth and tumorigenesis of the intestinal epitheliumvia Let-7
    • B. B. Madison, Q. Liu, X. Zhong et al., "LIN28B promotes growth and tumorigenesis of the intestinal epitheliumvia Let-7," Genes and Development, vol. 27, no. 20, pp. 2233-2245, 2013.
    • (2013) Genes and Development , vol.27 , Issue.20 , pp. 2233-2245
    • Madison, B.B.1    Liu, Q.2    Zhong, X.3
  • 32
    • 79953185674 scopus 로고    scopus 로고
    • Long pre-mRNA depletion and RNA missplicing contribute to neuronal vulnerability from loss of TDP-43
    • M. Polymenidou, C. Lagier-Tourenne, K. R. Hutt et al., "Long pre-mRNA depletion and RNA missplicing contribute to neuronal vulnerability from loss of TDP-43," Nature Neuroscience, vol. 14, no. 4, pp. 459-468, 2011.
    • (2011) Nature Neuroscience , vol.14 , Issue.4 , pp. 459-468
    • Polymenidou, M.1    Lagier-Tourenne, C.2    Hutt, K.R.3
  • 33
    • 84868160135 scopus 로고    scopus 로고
    • LIN28 binds messenger RNAs at GGAGA motifs and regulates splicing factor abundance
    • M. L. Wilbert, S. C. Huelga, K. Kapeli et al., "LIN28 binds messenger RNAs at GGAGA motifs and regulates splicing factor abundance," Molecular Cell, vol. 48, no. 2, pp. 195-206, 2012.
    • (2012) Molecular Cell , vol.48 , Issue.2 , pp. 195-206
    • Wilbert, M.L.1    Huelga, S.C.2    Kapeli, K.3
  • 34
    • 77954838957 scopus 로고    scopus 로고
    • Integrative modeling defines the nova splicing-regulatory network and its combinatorial controls
    • C. Zhang, M. A. Frias, A. Mele et al., "Integrative modeling defines the nova splicing-regulatory network and its combinatorial controls," Science, vol. 329, no. 5990, pp. 439-443, 2010.
    • (2010) Science , vol.329 , Issue.5990 , pp. 439-443
    • Zhang, C.1    Frias, M.A.2    Mele, A.3
  • 35
    • 84883503166 scopus 로고    scopus 로고
    • Transcriptome-wide identification of RNA binding sites by CLIP-seq
    • V. Murigneux, J. Saulière, H. Roest Crollius, and H. Le Hir, "Transcriptome-wide identification of RNA binding sites by CLIP-seq," Methods, vol. 63, no. 1, pp. 32-40, 2013.
    • (2013) Methods , vol.63 , Issue.1 , pp. 32-40
    • Murigneux, V.1    Saulière, J.2    Roest Crollius, H.3    Le Hir, H.4
  • 36
    • 84899497034 scopus 로고    scopus 로고
    • A model-based approach to identify binding sites in CLIP-seq data
    • T. Wang, B. Chen, M. Kim, Y. Xie, and G. Xiao, "A model-based approach to identify binding sites in CLIP-seq data," PLoS ONE, vol. 9, no. 4, Article IDe93248, 2014.
    • (2014) PLoS ONE , vol.9 , Issue.4
    • Wang, T.1    Chen, B.2    Kim, M.3    Xie, Y.4    Xiao, G.5
  • 37
    • 84892665507 scopus 로고    scopus 로고
    • PIPECLIP: A comprehensive online tool for CLIP-seq data analysis
    • B. Chen, J. Yun, M. S. Kim, J. T. Mendell, and Y. Xie, "PIPECLIP: a comprehensive online tool for CLIP-seq data analysis," Genome Biology, vol. 15, no. 1, article R18, 2014.
    • (2014) Genome Biology , vol.15 , Issue.1
    • Chen, B.1    Yun, J.2    Kim, M.S.3    Mendell, J.T.4    Xie, Y.5
  • 38
    • 83255194564 scopus 로고    scopus 로고
    • Pyicos: A versatile toolkit for the analysis of highthroughput sequencing data
    • S. Althammer, J. González-vallinas, C. Ballaré, M. Beato, and E. Eyras, "Pyicos: a versatile toolkit for the analysis of highthroughput sequencing data," Bioinformatics, vol. 27, no. 24, Article ID btr570, pp. 3333-3340, 2011.
    • (2011) Bioinformatics , vol.27 , Issue.24 , pp. 3333-3340
    • Althammer, S.1    González-Vallinas, J.2    Ballaré, C.3    Beato, M.4    Eyras, E.5
  • 39
    • 84870471564 scopus 로고    scopus 로고
    • Site identification in high-throughput RNA-protein interaction data
    • P. J. Uren, E. Bahrami-Samani, S. C. Burns et al., "Site identification in high-throughput RNA-protein interaction data," Bioinformatics, vol. 28, no. 23, pp. 3013-3020, 2012.
    • (2012) Bioinformatics , vol.28 , Issue.23 , pp. 3013-3020
    • Uren, P.J.1    Bahrami-Samani, E.2    Burns, S.C.3
  • 40
    • 84893757703 scopus 로고    scopus 로고
    • ASPeak: An abundance sensitive peak detection algorithm for RIP-Seq
    • A. Kucukural, H. Özadam, G. Singh, M. J. Moore, and C. Cenik, "ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq," Bioinformatics, vol. 29, no. 19, pp. 2485-2486, 2013.
    • (2013) Bioinformatics , vol.29 , Issue.19 , pp. 2485-2486
    • Kucukural, A.1    Özadam, H.2    Singh, G.3    Moore, M.J.4    Cenik, C.5
  • 41
    • 84855916545 scopus 로고    scopus 로고
    • Protein-RNAinteractions: Newgenomic technologies and perspectives
    • J. König, K. Zarnack, N. M. Luscombe, and J. Ule, "Protein-RNAinteractions: newgenomic technologies and perspectives," Nature Reviews Genetics, vol. 13, no. 2, pp. 77-83, 2012.
    • (2012) Nature Reviews Genetics , vol.13 , Issue.2 , pp. 77-83
    • König, J.1    Zarnack, K.2    Luscombe, N.M.3    Ule, J.4
  • 42
    • 84859885816 scopus 로고    scopus 로고
    • Differential gene and transcript expression analysis of RNA-seq experiments with Top Hat and Cufflinks
    • C. Trapnell, A. Roberts, L. Goff et al., "Differential gene and transcript expression analysis of RNA-seq experiments with Top Hat and Cufflinks," Nature Protocols, vol. 7, no. 3, pp. 562-578, 2012.
    • (2012) Nature Protocols , vol.7 , Issue.3 , pp. 562-578
    • Trapnell, C.1    Roberts, A.2    Goff, L.3
  • 43
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • S. Heinz, C. Benner, N. Spann et al., "Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities," Molecular Cell, vol. 38, no. 4, pp. 576-589, 2010.
    • (2010) Molecular Cell , vol.38 , Issue.4 , pp. 576-589
    • Heinz, S.1    Benner, C.2    Spann, N.3
  • 44
    • 0030970775 scopus 로고    scopus 로고
    • The cold shock domain protein LIN-28 controls developmental timing in C. Elegans and is regulated by the lin-4 RNA
    • E.G. Moss, R. C. Lee, and V. Ambros, "The cold shock domain protein LIN-28 controls developmental timing in C. elegans and is regulated by the lin-4 RNA," Cell, vol. 88, no. 5, pp. 637-646, 1997.
    • (1997) Cell , vol.88 , Issue.5 , pp. 637-646
    • Moss, E.G.1    Lee, R.C.2    Ambros, V.3
  • 45
    • 79953015943 scopus 로고    scopus 로고
    • Genome-wide studies reveal that Lin28 enhances the translation of genes important for growth and survival of human embryonic stem cells
    • S. Peng, L.-L. Chen, X.-X. Lei et al., "Genome-wide studies reveal that Lin28 enhances the translation of genes important for growth and survival of human embryonic stem cells," Stem Cells, vol. 29, no. 3, pp. 496-504, 2011.
    • (2011) Stem Cells , vol.29 , Issue.3 , pp. 496-504
    • Peng, S.1    Chen, L.-L.2    Lei, X.-X.3
  • 46
    • 84865589321 scopus 로고    scopus 로고
    • How does Lin28 let-7 control development and disease?
    • J. E. Thornton and R. I. Gregory, "How does Lin28 let-7 control development and disease?" Trends in Cell Biology, vol. 22, no. 9, pp. 474-482, 2012.
    • (2012) Trends in Cell Biology , vol.22 , Issue.9 , pp. 474-482
    • Thornton, J.E.1    Gregory, R.I.2
  • 47
    • 80053585752 scopus 로고    scopus 로고
    • LIN28B fosters colon cancer migration, invasion and transformation through let-7-dependent and-independent mechanisms
    • C. E. King, L. Wang, R. Winograd et al., "LIN28B fosters colon cancer migration, invasion and transformation through let-7-dependent and-independent mechanisms," Oncogene, vol. 30, no. 40, pp. 4185-4193, 2011.
    • (2011) Oncogene , vol.30 , Issue.40 , pp. 4185-4193
    • King, C.E.1    Wang, L.2    Winograd, R.3
  • 48
    • 68749102148 scopus 로고    scopus 로고
    • TUT4 in concert with Lin28 suppresses microRNA biogenesis through pre-microRNA uridylation
    • I. Heo, C. Joo, Y.-K. Kim et al., "TUT4 in concert with Lin28 suppresses microRNA biogenesis through pre-microRNA uridylation," Cell, vol. 138, no. 4, pp. 696-708, 2009.
    • (2009) Cell , vol.138 , Issue.4 , pp. 696-708
    • Heo, I.1    Joo, C.2    Kim, Y.-K.3
  • 49
    • 81855228621 scopus 로고    scopus 로고
    • Molecular basis for interaction of let-7 microRNAs with Lin28
    • Y. Nam, C. Chen, R. I. Gregory, J. J. Chou, and P. Sliz, "Molecular basis for interaction of let-7 microRNAs with Lin28," Cell, vol. 147, no. 5, pp. 1080-1091, 2011.
    • (2011) Cell , vol.147 , Issue.5 , pp. 1080-1091
    • Nam, Y.1    Chen, C.2    Gregory, R.I.3    Chou, J.J.4    Sliz, P.5
  • 51
    • 79960230895 scopus 로고    scopus 로고
    • Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data
    • C. Zhang and R. B. Darnell, "Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data," Nature Biotechnology, vol. 29, no. 7, pp. 607-614, 2011.
    • (2011) Nature Biotechnology , vol.29 , Issue.7 , pp. 607-614
    • Zhang, C.1    Darnell, R.B.2
  • 52
    • 84936744064 scopus 로고    scopus 로고
    • Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
    • Y. Sugimoto, J. König, S. Hussain et al., "Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions," Genome Biology, vol. 13, no. 8, article R67, 2012.
    • (2012) Genome Biology , vol.13 , Issue.8
    • Sugimoto, Y.1    König, J.2    Hussain, S.3
  • 53
    • 84880427394 scopus 로고    scopus 로고
    • A compendium of RNAbinding motifs for decoding gene regulation
    • D. Ray, H. Kazan, K. B. Cook et al., "A compendium of RNAbinding motifs for decoding gene regulation," Nature, vol. 499, no. 7457, pp. 172-177, 2013.
    • (2013) Nature , vol.499 , Issue.7457 , pp. 172-177
    • Ray, D.1    Kazan, H.2    Cook, K.B.3
  • 54
    • 84892402537 scopus 로고    scopus 로고
    • Dissecting the expression landscape of RNA-binding proteins in human cancers
    • B. Kechavarzi and S. C. Janga, "Dissecting the expression landscape of RNA-binding proteins in human cancers," Genome Biology, vol. 15, no. 1, article R14, 2014.
    • (2014) Genome Biology , vol.15 , Issue.1
    • Kechavarzi, B.1    Janga, S.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.