Multiplex PCR analysis of clusters of unexplained viral respiratory tract infection in Cambodia

Virology Journal

Volumn 11, Issue 1, 2014, Pages

  Ly, Nary ^a   Tokarz, Rafal ^b   Mishra, Nischay ^b   Sameroff, Stephen ^b   Jain, Komal ^b   Rachmat, Agus ^a   An, Ung Sam ^c   Newell, Steven ^a   Harrison, Dustin J ^a   Lipkin, W Ian ^b  

^a US Naval Medical Research Unit Two   (Cambodia)

^b Department of Medicine   (United States)

^c Cambodian Health Committee   (Cambodia)

Author keywords

Enterovirus 68; Respiratory disease; RSV

Indexed keywords

ABDOMINAL CRAMP; ADOLESCENT; ADULT; AGE DISTRIBUTION; AGED; ARTHRALGIA; ARTICLE; CAMBODIA; CHILD; CHILL; CLUSTER ANALYSIS; CONTROLLED STUDY; COUGHING; ENTEROVIRUS; ENTEROVIRUS 68; FEMALE; HEADACHE; HUMAN; HUMAN RESPIRATORY SYNCYTIAL VIRUS; INFLUENZA; MAJOR CLINICAL STUDY; MALAISE; MALE; MICROBIOLOGICAL EXAMINATION; MIDDLE AGED; MULTIPLEX POLYMERASE CHAIN REACTION; MYALGIA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHARYNGITIS; PNEUMONIA; PRESCHOOL CHILD; RHINOVIRUS; SCHOOL CHILD; SEQUENCE ANALYSIS; SORE THROAT; TYPHOID FEVER; VIRAL RESPIRATORY TRACT INFECTION; VIRUS DETECTION; VOMITING; CLASSIFICATION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; RESPIRATORY TRACT INFECTIONS; VIROLOGY; VIRUS; VIRUS DISEASES; YOUNG ADULT;

HUMAN ENTEROVIRUS 68; HUMAN RHINOVIRUS SP.; RESPIRATORY SYNCYTIAL VIRUS; RICE STRIPE VIRUS;

ADOLESCENT; ADULT; AGED; CAMBODIA; CHILD; CHILD, PRESCHOOL; FEMALE; HUMANS; MALE; MIDDLE AGED; MOLECULAR SEQUENCE DATA; MULTIPLEX POLYMERASE CHAIN REACTION; RESPIRATORY TRACT INFECTIONS; SEQUENCE ANALYSIS, DNA; VIRUS DISEASES; VIRUSES; YOUNG ADULT;

EID: 84936854722     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/s12985-014-0224-x     Document Type: Article

References (27)

1. Luksic I, Kearns PK, Scott F, Rudan I, Campbell H, Nair H: Viral etiology of hospitalized acute lower respiratory infections in children under 5 years of age - a systematic review and meta-analysis. Croat Med J 2013, 54(2):122-134.
2. Rudan I, O'Brien KL, Nair H, Liu L, Theodoratou E, Qazi S, Luksic I, Fischer Walker CL, Black RE, Campbell H: Epidemiology and etiology of childhood pneumonia in 2010: estimates of incidence, severe morbidity, mortality, underlying risk factors and causative pathogens for 192 countries. J Glob Health 2013, 3(1):010401.
3. Rudan I, Tomaskovic L, Boschi-Pinto C, Campbell H: Global estimate of the incidence of clinical pneumonia among children under five years of age. Bull World Health Organ 2004, 82(12):895-903.
4. Profiles W-CCH: Cambodia pneumonia under 5. Geneva, Switzerland: World Health Organization Western Pacific Region, Country Health Information Profiles; 2010:45-65
5. Profiles W-CCH: Acute Respiratory Infection Cambodia. Geneva, Switzerland: World Health Organization Western Pacific Region, Country Health Information Profiles; 2011:43-61.
6. Kasper MR, Blair PJ, Touch S, Sokhal B, Yasuda CY, Williams M, Richards AL, Burgess TH, Wierzba TF, Putnam SD: Infectious etiologies of acute febrile illness among patients seeking health care in south-central Cambodia. Am J Trop Med Hyg 2012, 86(2):246-253.
7. Blair PJ, Wierzba TF, Touch S, Vonthanak S, Xu X, Garten RJ, Okomo-Adhiambo MA, Klimov AI, Kasper MR, Putnam SD: Influenza epidemiology and characterization of influenza viruses in patients seeking treatment for acute fever in Cambodia. Epidemiol Infect 2010, 138(2):199-209.
8. Sreng B, Touch S, Sovann L, Heng S, Rathmony H, Huch C, Chea N, Kosal S, Siriarayaporn P, Pathanapornpandh N, Rehmet S, Cavailler P, Vong S, Bushy P: A description of influenza-like illness (ILI) sentinel surveillance in Cambodia, 2006-2008. Southeast Asian J Trop Med Public Health 2010, 41(1):97-104.
9. Briese T, Palacios G, Kokoris M, Jabado O, Liu Z, Renwick N, Kapoor V, Casas I, Pozo F, Limberger R, Perez-Brena P, Ju J, Lipkin WI: Diagnostic system for rapid and sensitive differential detection of pathogens. Emerg Infect Dis 2005, 11(2):310-313.
10. Lamson D, Renwick N, Kapoor V, Liu Z, Palacios G, Ju J, Dean A, St George K, Briese T, Lipkin WI: MassTag polymerase-chain-reaction detection of respiratory pathogens, including a new rhinovirus genotype, that caused influenza-like illness in New York State during 2004-2005. J Infect Dis 2006, 194(10):1398-1402.
11. Tokarz R, Firth C, Madhi SA, Howie SR, Wu W, Sall AA, Haq S, Briese T, Lipkin WI: Worldwide emergence of multiple clades of enterovirus 68. J Gen Virol 2012, 93(Pt 9):1952-1958.
12. Ikeda T, Mizuta K, Abiko C, Aoki Y, Itagaki T, Katsushima F, Katsushima Y, Matsuzaki Y, Fuji N, Imamura T, Oshitani H, Noda M, Kimura H, Ahiko T: Acute respiratory infections due to enterovirus 68 in Yamagata, Japan between 2005 and 2010. Microbiol Immunol 2012, 56(2):139-143.
13. Meijer A, van der Sanden S, Snijders BE, Jaramillo-Gutierrez G, Bont L, van der Ent CK, Overduin P, Jenny SL, Jusic E, van der Avoort HG, Smith GJ, Donker GA, Koopmans MP: Emergence and epidemic occurrence of enterovirus 68 respiratory infections in The Netherlands in 2010. Virology 2012, 423(1):49-57.
14. Todd AK, Hall RJ, Wang J, Peacey M, McTavish S, Rand CJ, Stanton JA, Taylor S, Huang QS: Detection and whole genome sequence analysis of an enterovirus 68 cluster. Virol J 2013, 10:103.
15. Imamura T, Fuji N, Suzuki A, Tamaki R, Saito M, Aniceto R, Galang H, Sombrero L, Lupisan S, Oshitani H: Enterovirus 68 among children with severe acute respiratory infection, the Philippines. Emerg Infect Dis 2011, 17(8):1430-1435.
16. Piralla A, Girello A, Grignani M, Gozalo-Marguello M, Marchi A, Marseglia G, Baldanti F: Phylogenetic characterization of enterovirus 68 strains in patients with respiratory syndromes in Italy. J Med Virol 2013, 86(9):1590-1593.
17. Guerrier G, Goyet S, Chheng ET, Rammaert B, Borand L, Te V, Try PL, Sareth R, Cavailler P, Mayaud C, Guillard B, Vong S, Buchy P, Tarantola A: Acute viral lower respiratory tract infections in Cambodian children: clinical and epidemiologic characteristics. Pediatr Infect Dis J 2013, 32(1):e8-e13.
18. Arnott A, Vong S, Mardy S, Chu S, Naughtin M, Sovann L, Buecher C, Beaute J, Rith S, Borand L, Asgari N, Frutos R, Guillard B, Touch S, Deubel V, Buchy P: A study of the genetic variability of human respiratory syncytial virus (HRSV) in Cambodia reveals the existence of a new HRSV group B genotype. J Clin Microbiol 2011, 49(10):3504-3513.
19. Vong S, Guillard B, Borand L, Rammaert B, Goyet S, Te V, Lorn Try P, Hem S, Rith S, Ly S, Cavailler P, Mayaud C, Buchy P: Acute lower respiratory infections in >/= 5 year -old hospitalized patients in Cambodia, a low-income tropical country: clinical characteristics and pathogenic etiology. BMC Infect Dis 2013, 13:97.
20. Schieble JH, Fox VL, Lennette EH: A probable new human picornavirus associated with respiratory diseases. Am J Epidemiol 1967, 85(2):297-310.
21. Khetsuriani N, Lamonte-Fowlkes A, Oberst S, Pallansch MA: Enterovirus surveillance-United States, 1970-2005. MMWR Surveill Summ 2006, 55(8):1-20.
22. Centers for Disease Control and Prevention: Clusters of acute respiratory illness associated with human enterovirus 68 - Asia, Europe, and United States, 2008-2010. MMWR Morb Mortal Wkly Rep 2011, 60(38):1301-1304.
23. Linsuwanon P, Puenpa J, Suwannakarn K, Auksornkitti V, Vichiwattana P, Korkong S, Theamboonlers A, Poovorawan Y: Molecular epidemiology and evolution of human enterovirus serotype 68 in Thailand, 2006-2011. PLoS One 2012, 7(5):e35190.
24. Xiang Z, Gonzalez R, Wang Z, Ren L, Xiao Y, Li J, Li Y, Vernet G, Paranhos-Baccala G, Jin Q, Wang J: Coxsackievirus A21, enterovirus 68, and acute respiratory tract infection, China. Emerg Infect Dis 2012, 18(5):821-824.
25. Imamura T, Okamoto M, Nakakita S, Suzuki A, Saito M, Tamaki R, Lupisan S, Roy CN, Hiramatsu H, Sugawara KE, Mizuta K, Matsuzaki Y, Suzuki Y, Oshitani H: Antigenic and receptor binding properties of enterovirus 68. J Virol 2014, 88(5):2374-2384.
26. Tokarz R, Kapoor V, Wu W, Lurio J, Jain K, Mostashari F, Briese T, Lipkin WI: Longitudinal molecular microbial analysis of influenza-like illness in New York City, May 2009 through May 2010. Virol J 2011, 8:288.
27. Centers for Disease Control and Prevention, Severe Respiratory Illness Associated with Enterovirus D68-Missouri and Illinois, 2014. Morbidity and Mortality Weekly Report, 2014. 63(36):798-799.