-
1
-
-
34247221584
-
Effects of oregano, carvacrol and thymol on Staphylococcus aureus and Staphylococcus epidermidis biofilms
-
Nostro, A. et al. Effects of oregano, carvacrol and thymol on Staphylococcus aureus and Staphylococcus epidermidis biofilms. J Med Microbiol 56, 519-523 (2007).
-
(2007)
J Med Microbiol
, vol.56
, pp. 519-523
-
-
Nostro, A.1
-
2
-
-
42449117637
-
Discovery of a quorum-sensing inhibitor of drug-resistant staphylococcal infections by structure-based virtual screening
-
Kiran, M. D. et al. Discovery of a quorum-sensing inhibitor of drug-resistant staphylococcal infections by structure-based virtual screening. Mol Pharmacol 73, 1578-1586 (2008).
-
(2008)
Mol Pharmacol
, vol.73
, pp. 1578-1586
-
-
Kiran, M.D.1
-
3
-
-
0032551901
-
Staphylococcus aureus infections
-
Lowy, F. D. Staphylococcus aureus infections. N Engl J Med 339, 520-532 (1998).
-
(1998)
N Engl J Med
, vol.339
, pp. 520-532
-
-
Lowy, F.D.1
-
4
-
-
77954804120
-
Staphylococcus aureus nonribosomal peptide secondary metabolites regulate virulence
-
Wyatt, M. A. et al. Staphylococcus aureus nonribosomal peptide secondary metabolites regulate virulence. Science 329, 294-296 (2010).
-
(2010)
Science
, vol.329
, pp. 294-296
-
-
Wyatt, M.A.1
-
5
-
-
36549081269
-
Investigation of biofilm formation in clinical isolates of Staphylococcus aureus
-
Cassat, J. E., Lee, C. Y. & Smeltzer, M. S. Investigation of biofilm formation in clinical isolates of Staphylococcus aureus. Methods Mol Biol 391, 127-144 (2007).
-
(2007)
Methods Mol Biol
, vol.391
, pp. 127-144
-
-
Cassat, J.E.1
Lee, C.Y.2
Smeltzer, M.S.3
-
6
-
-
84866403287
-
Cis-2-decenoic acid inhibits S. aureus growth and biofilm in vitro: A pilot study
-
Jennings, J. A., Courtney, H. S. & Haggard, W. O. Cis-2-decenoic acid inhibits S. aureus growth and biofilm in vitro: a pilot study. Clin Orthop Relat Res 470, 2663-2670 (2012).
-
(2012)
Clin Orthop Relat Res
, vol.470
, pp. 2663-2670
-
-
Jennings, J.A.1
Courtney, H.S.2
Haggard, W.O.3
-
7
-
-
67349190110
-
Effect of berberine on Staphylococcus epidermidis biofilm formation
-
Wang, X. et al. Effect of berberine on Staphylococcus epidermidis biofilm formation. Int J Antimicrob Agents 34, 60-66 (2009).
-
(2009)
Int J Antimicrob Agents
, vol.34
, pp. 60-66
-
-
Wang, X.1
-
8
-
-
11444252559
-
Sociomicrobiology: The connections between quorum sensing and biofilms
-
Parsek, M. R. & Greenberg, E. P. Sociomicrobiology: the connections between quorum sensing and biofilms. Trends Microbiol 13, 27-33 (2005).
-
(2005)
Trends Microbiol
, vol.13
, pp. 27-33
-
-
Parsek, M.R.1
Greenberg, E.P.2
-
9
-
-
1542317089
-
Quorum sensing in Staphylococcus aureus biofilms
-
Yarwood, J. M., Bartels, D. J., Volper, E. M. & Greenberg, E. P. Quorum sensing in Staphylococcus aureus biofilms. J Bacteriol 186, 1838-1850 (2004).
-
(2004)
J Bacteriol
, vol.186
, pp. 1838-1850
-
-
Yarwood, J.M.1
Bartels, D.J.2
Volper, E.M.3
Greenberg, E.P.4
-
10
-
-
0036156185
-
Relationships between Staphylococcus aureus genetic background, virulence factors, agr groups (alleles), and human disease
-
Jarraud, S. et al. Relationships between Staphylococcus aureus genetic background, virulence factors, agr groups (alleles), and human disease. Infect Immun 70, 631-641 (2002).
-
(2002)
Infect Immun
, vol.70
, pp. 631-641
-
-
Jarraud, S.1
-
11
-
-
34548579184
-
agr-Genotyping and transcriptional analysis of biofilm-producing Staphylococcus aureus
-
Cafiso, V. et al. agr-Genotyping and transcriptional analysis of biofilm-producing Staphylococcus aureus. FEMS Immunol Med Microbiol 51, 220-227 (2007).
-
(2007)
FEMS Immunol Med Microbiol
, vol.51
, pp. 220-227
-
-
Cafiso, V.1
-
12
-
-
0036237753
-
Accessory gene regulator (agr) locus in geographically diverse Staphylococcus aureus isolates with reduced susceptibility to vancomycin
-
Sakoulas, G. et al. Accessory gene regulator (agr) locus in geographically diverse Staphylococcus aureus isolates with reduced susceptibility to vancomycin. Antimicrob Agents Chemother 46, 1492-1502 (2002).
-
(2002)
Antimicrob Agents Chemother
, vol.46
, pp. 1492-1502
-
-
Sakoulas, G.1
-
13
-
-
0037443852
-
Staphylococcus aureus accessory gene regulator (agr) group II: Is there a relationship to the development of intermediate-level glycopeptide resistance?
-
Sakoulas, G. et al. Staphylococcus aureus accessory gene regulator (agr) group II: is there a relationship to the development of intermediate-level glycopeptide resistance? J Infect Dis 187, 929-938 (2003).
-
(2003)
J Infect Dis
, vol.187
, pp. 929-938
-
-
Sakoulas, G.1
-
14
-
-
18444391218
-
Differential gene expression profiling of Staphylococcus aureus cultivated under biofilm and planktonic conditions
-
Resch, A., Rosenstein, R., Nerz, C. & Gotz, F. Differential gene expression profiling of Staphylococcus aureus cultivated under biofilm and planktonic conditions. Appl Environ Microbiol 71, 2663-2676 (2005).
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 2663-2676
-
-
Resch, A.1
Rosenstein, R.2
Nerz, C.3
Gotz, F.4
-
15
-
-
33645467362
-
Comparative proteome analysis of Staphylococcus aureus biofilm and planktonic cells and correlation with transcriptome profiling
-
Resch, A. et al. Comparative proteome analysis of Staphylococcus aureus biofilm and planktonic cells and correlation with transcriptome profiling. Proteomics 6, 1867-1877 (2006).
-
(2006)
Proteomics
, vol.6
, pp. 1867-1877
-
-
Resch, A.1
-
16
-
-
76149111953
-
Copper stress induces a global stress response in Staphylococcus aureus and represses sae and agr expression and biofilm formation
-
Baker, J. et al. Copper stress induces a global stress response in Staphylococcus aureus and represses sae and agr expression and biofilm formation. Appl Environ Microbiol 76, 150-160 (2010).
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 150-160
-
-
Baker, J.1
-
17
-
-
73849134282
-
Influence of tigecycline on expression of virulence factors in biofilm-associated cells of methicillin-resistant Staphylococcus aureus
-
Smith, K. et al. Influence of tigecycline on expression of virulence factors in biofilm-associated cells of methicillin-resistant Staphylococcus aureus. Antimicrob Agents Chemother 54, 380-387 (2010).
-
(2010)
Antimicrob Agents Chemother
, vol.54
, pp. 380-387
-
-
Smith, K.1
-
18
-
-
84903648180
-
RNA-Seq-based transcriptome analysis of methicillin-resistant Staphylococcus aureus biofilm inhibition by ursolic acid and resveratrol
-
Qin, N. et al. RNA-Seq-based transcriptome analysis of methicillin-resistant Staphylococcus aureus biofilm inhibition by ursolic acid and resveratrol. Sci Rep 4, 5467 (2014).
-
(2014)
Sci Rep
, vol.4
, pp. 5467
-
-
Qin, N.1
-
19
-
-
84880266648
-
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
-
Haas, B. J. et al. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat Protoc 8, 1494-1512 (2013).
-
(2013)
Nat Protoc
, vol.8
, pp. 1494-1512
-
-
Haas, B.J.1
-
20
-
-
79960264362
-
Full-length transcriptome assembly from RNA-Seq data without a reference genome
-
Grabherr, M. G. et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol 29, 644-652 (2011).
-
(2011)
Nat Biotechnol
, vol.29
, pp. 644-652
-
-
Grabherr, M.G.1
-
21
-
-
12244289912
-
Prevalence of agr specificity groups among Staphylococcus aureus strains colonizing children and their guardians
-
Shopsin, B. et al. Prevalence of agr specificity groups among Staphylococcus aureus strains colonizing children and their guardians. J Clin Microbiol 41, 456-459 (2003).
-
(2003)
J Clin Microbiol
, vol.41
, pp. 456-459
-
-
Shopsin, B.1
-
22
-
-
0346195651
-
Bacterial competition for human nasal cavity colonization: Role of Staphylococcal agr alleles
-
Lina, G. et al. Bacterial competition for human nasal cavity colonization: role of Staphylococcal agr alleles. Appl Environ Microbiol 69, 18-23 (2003).
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 18-23
-
-
Lina, G.1
-
23
-
-
0036840823
-
Analysis of the genetic variability of genes encoding the RNAIII-activating components Agr and TRAP in a population of Staphylococcus aureus strains isolated from cows with mastitis
-
Gilot, P., Lina, G., Cochard, T. & Poutrel, B. Analysis of the genetic variability of genes encoding the RNAIII-activating components Agr and TRAP in a population of Staphylococcus aureus strains isolated from cows with mastitis. J Clin Microbiol 40, 4060-4067 (2002).
-
(2002)
J Clin Microbiol
, vol.40
, pp. 4060-4067
-
-
Gilot, P.1
Lina, G.2
Cochard, T.3
Poutrel, B.4
-
24
-
-
84903212124
-
De novo assembly and transcriptome characterization: Novel insights into the natural resistance mechanisms of Microtus fortis against Schistosoma japonicum
-
Hu, Y. et al. De novo assembly and transcriptome characterization: novel insights into the natural resistance mechanisms of Microtus fortis against Schistosoma japonicum. BMC Genomics 15, 417 (2014).
-
(2014)
BMC Genomics
, vol.15
, pp. 417
-
-
Hu, Y.1
-
25
-
-
70349133953
-
Candida albicans and Staphylococcus aureus form polymicrobial biofilms: Effects on antimicrobial resistance
-
Harriott, M. M. & Noverr, M. C. Candida albicans and Staphylococcus aureus form polymicrobial biofilms: effects on antimicrobial resistance. Antimicrob Agents Chemother 53, 3914-3922 (2009).
-
(2009)
Antimicrob Agents Chemother
, vol.53
, pp. 3914-3922
-
-
Harriott, M.M.1
Noverr, M.C.2
-
26
-
-
35148823561
-
Biosynthesis of Staphylococcus aureus autoinducing peptides by using the synechocystis DnaB mini-intein
-
Malone, C. L., Boles, B. R. & Horswill, A. R. Biosynthesis of Staphylococcus aureus autoinducing peptides by using the synechocystis DnaB mini-intein. Appl Environ Microbiol 73, 6036-6044 (2007).
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 6036-6044
-
-
Malone, C.L.1
Boles, B.R.2
Horswill, A.R.3
-
27
-
-
43049135194
-
Agr-mediated dispersal of Staphylococcus aureus biofilms
-
Boles, B. R. & Horswill, A. R. Agr-mediated dispersal of Staphylococcus aureus biofilms. PLoS Pathog 4, e1000052 (2008).
-
(2008)
PLoS Pathog
, vol.4
-
-
Boles, B.R.1
Horswill, A.R.2
-
28
-
-
84877855239
-
A combined pharmacodynamic quantitative and qualitative model reveals the potent activity of daptomycin and delafloxacin against Staphylococcus aureus biofilms
-
Bauer, J., Siala, W., Tulkens, P. M. & Van Bambeke, F. A combined pharmacodynamic quantitative and qualitative model reveals the potent activity of daptomycin and delafloxacin against Staphylococcus aureus biofilms. Antimicrob Agents Chemother 57, 2726-2737 (2013).
-
(2013)
Antimicrob Agents Chemother
, vol.57
, pp. 2726-2737
-
-
Bauer, J.1
Siala, W.2
Tulkens, P.M.3
Van Bambeke, F.4
-
29
-
-
77953533205
-
Evaluation of synergistic activity of bovine lactoferricin with antibiotics in corneal infection
-
Oo, T. Z., Cole, N., Garthwaite, L., Willcox, M. D. & Zhu, H. Evaluation of synergistic activity of bovine lactoferricin with antibiotics in corneal infection. J Antimicrob Chemother 65, 1243-1251 (2010).
-
(2010)
J Antimicrob Chemother
, vol.65
, pp. 1243-1251
-
-
Oo, T.Z.1
Cole, N.2
Garthwaite, L.3
Willcox, M.D.4
Zhu, H.5
-
30
-
-
84856468953
-
NGS QC Toolkit: A toolkit for quality control of next generation sequencing data
-
Patel, R. K. & Jain, M. NGS QC Toolkit: a toolkit for quality control of next generation sequencing data. PLoS One 7, e30619 (2012).
-
(2012)
PLoS One
, vol.7
-
-
Patel, R.K.1
Jain, M.2
-
31
-
-
79960976768
-
UniProt Knowledgebase: A hub of integrated protein data
-
Magrane, M. & Consortium, U. UniProt Knowledgebase: a hub of integrated protein data. Database (Oxford) 2011, bar009 (2011).
-
(2011)
Database (Oxford)
, vol.2011
-
-
Magrane, M.1
Consortium, U.2
-
32
-
-
0345863935
-
The KEGG resource for deciphering the genome
-
Kanehisa, M., Goto, S., Kawashima, S., Okuno, Y. & Hattori, M. The KEGG resource for deciphering the genome. Nucleic Acids Res 32, 277-280 (2004).
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 277-280
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Okuno, Y.4
Hattori, M.5
-
33
-
-
0030921594
-
A database for post-genome analysis
-
Kanehisa, M. A database for post-genome analysis. Trends Genet 13, 375-376 (1997).
-
(1997)
Trends Genet
, vol.13
, pp. 375-376
-
-
Kanehisa, M.1
-
34
-
-
33644874819
-
From genomics to chemical genomics: New developments in KEGG
-
Kanehisa, M. et al. From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Res 34, 354-357 (2006).
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 354-357
-
-
Kanehisa, M.1
-
35
-
-
0030660581
-
A genomic perspective on protein families
-
Tatusov, R. L., Koonin, E. V. & Lipman, D. J. A genomic perspective on protein families. Science 278, 631-637 (1997).
-
(1997)
Science
, vol.278
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
36
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
Tatusov, R. L. et al. The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4, 41 (2003).
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
-
37
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner, M. et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25, 25-29 (2000).
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
-
38
-
-
24644503098
-
Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
-
Conesa, A. et al. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21, 3674-3676 (2005).
-
(2005)
Bioinformatics
, vol.21
, pp. 3674-3676
-
-
Conesa, A.1
-
39
-
-
33747846582
-
WEGO: A web tool for plotting GO annotations
-
Ye, J. et al. WEGO: a web tool for plotting GO annotations. Nucleic Acids Res 34, 293-297 (2006).
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 293-297
-
-
Ye, J.1
-
40
-
-
79961123152
-
RSEM: Accurate transcript quantification from RNA-Seq data with or without a reference genome
-
Li, B. & Dewey, C. N. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 12, 323 (2011).
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 323
-
-
Li, B.1
Dewey, C.N.2
-
41
-
-
75249087100
-
edgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson, M. D., McCarthy, D. J. & Smyth, G. K. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26, 139-140 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
|