메뉴 건너뛰기




Volumn 43, Issue 11, 2015, Pages

Development of a high-resolution NGS-based HLA-typing and analysis pipeline

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; HLA A ANTIGEN; HLA ANTIGEN; HLA ANTIGEN CLASS 2; HLA B ANTIGEN; HLA C ANTIGEN; HLA DPA1 ANTIGEN; HLA DPB1 ANTIGEN; HLA DQA1 ANTIGEN; HLA DQB1 ANTIGEN; HLA DRB1 ANTIGEN; UNCLASSIFIED DRUG;

EID: 84936806668     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkv184     Document Type: Article
Times cited : (68)

References (37)
  • 1
    • 84884311983 scopus 로고    scopus 로고
    • Major histocompatibility complex genomics and human disease
    • Trowsdale, J. and Knight, J.C. (2013) Major histocompatibility complex genomics and human disease. Annu. Rev. Genomics Hum. Genet., 14, 301-323.
    • (2013) Annu. Rev. Genomics Hum. Genet , vol.14 , pp. 301-323
    • Trowsdale, J.1    Knight, J.C.2
  • 3
    • 20544460101 scopus 로고    scopus 로고
    • HLA associated genetic predisposition to autoimmune diseases: Genes involved and possible mechanisms
    • Thorsby, E. and Lie, B.A. (2005) HLA associated genetic predisposition to autoimmune diseases: genes involved and possible mechanisms. Transpl. Immunol., 14, 175-182.
    • (2005) Transpl. Immunol , vol.14 , pp. 175-182
    • Thorsby, E.1    Lie, B.A.2
  • 4
    • 43549121020 scopus 로고    scopus 로고
    • Human MHC architecture and evolution: Implications for disease association studies
    • Traherne, J.A. (2008) Human MHC architecture and evolution: implications for disease association studies. Int. J. Immunogenet., 35, 179-192.
    • (2008) Int. J. Immunogenet , vol.35 , pp. 179-192
    • Traherne, J.A.1
  • 5
    • 4644359708 scopus 로고    scopus 로고
    • Impact of HLA class i and class II high-resolution matching on outcomes of unrelated donor bone marrow transplantation: HLA-C mismatching is associated with a strong adverse effect on transplantation outcome
    • Flomenberg, N., Baxter-Lowe, L.A., Confer, D., Fernandez-Vina, M., Filipovich, A., Horowitz, M., Hurley, C., Kollman, C., Anasetti, C., Noreen, H. et al. (2004). Impact of HLA class I and class II high-resolution matching on outcomes of unrelated donor bone marrow transplantation: HLA-C mismatching is associated with a strong adverse effect on transplantation outcome. Blood, 104, 1923-1930.
    • (2004) Blood , vol.104 , pp. 1923-1930
    • Flomenberg, N.1    Baxter-Lowe, L.A.2    Confer, D.3    Fernandez-Vina, M.4    Filipovich, A.5    Horowitz, M.6    Hurley, C.7    Kollman, C.8    Anasetti, C.9    Noreen, H.10
  • 8
    • 24044517208 scopus 로고    scopus 로고
    • Several genes in the extended human MHC contribute to predisposition to autoimmune diseases
    • Lie, B.A. and Thorsby, E. (2005) Several genes in the extended human MHC contribute to predisposition to autoimmune diseases. Current Opin. Immunol., 17, 526-531.
    • (2005) Current Opin. Immunol , vol.17 , pp. 526-531
    • Lie, B.A.1    Thorsby, E.2
  • 10
    • 0024792513 scopus 로고
    • Biology of natural killer cells
    • Trinchieri, G. (1989) Biology of natural killer cells. Adv. Immunol., 47, 187-376.
    • (1989) Adv. Immunol , vol.47 , pp. 187-376
    • Trinchieri, G.1
  • 11
    • 0027132097 scopus 로고
    • HLA-C is the inhibitory ligand that determines dominant resistance to lysis by NK1-and NK2-specific natural killer cells
    • Colonna, M., Borsellino, G., Falco, M., Ferrara, G.B. and Strominger, J.L. (1993) HLA-C is the inhibitory ligand that determines dominant resistance to lysis by NK1-and NK2-specific natural killer cells. Proc. Natl Acad. Sci. U.S.A., 90, 12000-12004.
    • (1993) Proc. Natl Acad. Sci. U.S.A , vol.90 , pp. 12000-12004
    • Colonna, M.1    Borsellino, G.2    Falco, M.3    Ferrara, G.B.4    Strominger, J.L.5
  • 12
    • 0029551048 scopus 로고
    • Killer cell inhibitory receptors specific for HLA-C and HLA-B identified by direct binding and by functional transfer
    • Wagtmann, N., Rajagopalan, S., Winter, C.C., Peruzzi, M. and Long, E.O. (1995) Killer cell inhibitory receptors specific for HLA-C and HLA-B identified by direct binding and by functional transfer. Immunity, 3, 801-809.
    • (1995) Immunity , vol.3 , pp. 801-809
    • Wagtmann, N.1    Rajagopalan, S.2    Winter, C.C.3    Peruzzi, M.4    Long, E.O.5
  • 14
    • 84934442655 scopus 로고    scopus 로고
    • Sequence-based typing of HLA: An improved group-specific full-length gene sequencing approach
    • Voorter, C.E., Palusci, F. and Tilanus, M.G. (2014) Sequence-based typing of HLA: an improved group-specific full-length gene sequencing approach. Methods Mol. Biol., 1109, 101-114.
    • (2014) Methods Mol. Biol , vol.1109 , pp. 101-114
    • Voorter, C.E.1    Palusci, F.2    Tilanus, M.G.3
  • 23
    • 84892404218 scopus 로고    scopus 로고
    • HLA typing from 1000 genomes whole genome and whole exome illumina data
    • Major, E., Rig o, K., Hague, T., Bérces, A. and Juhos, S. (2013) HLA typing from 1000 genomes whole genome and whole exome illumina data. PLoS One, 8, e78410.
    • (2013) PLoS One , vol.8 , pp. e78410
    • Major, E.1
  • 24
    • 84975795680 scopus 로고    scopus 로고
    • An integrated map of genetic variation from 1, 092 human genomes
    • 1000 Genomes Project Consortium
    • 1000 Genomes Project Consortium (2012) An integrated map of genetic variation from 1, 092 human genomes. Nature, 491, 56-65.
    • (2012) Nature , vol.491 , pp. 56-65
  • 27
    • 0025944267 scopus 로고
    • DNA probes: Applications of the principles of nucleic acid hybridization
    • Wetmur, J.G. and Fresco, J. (1991) DNA probes: applications of the principles of nucleic acid hybridization. Crit. Rev. Biochem. Mol. Biol., 26, 227-259.
    • (1991) Crit. Rev. Biochem. Mol. Biol , vol.26 , pp. 227-259
    • Wetmur, J.G.1    Fresco, J.2
  • 31
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-the BLAST-like alignment tool
    • Kent, W.J. (2002) BLAT-the BLAST-like alignment tool. Genome Res., 12, 656-64.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 32
    • 84863304598 scopus 로고    scopus 로고
    • R Core Team R Foundation for Statistical Computing, Vienna
    • R Core Team (2014) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, http://cran.r-project.org/doc/FAQ/R-FAQ.html#Citing-R.
    • (2014) R: A Language and Environment for Statistical Computing
  • 33
    • 84878251175 scopus 로고    scopus 로고
    • Phase-defined complete sequencing of the HLA genes by next-generation sequencing
    • Hosomichi, K., Jinam, T.A., Mitsunaga, S., Nakaoka, H. and Inoue, I. (2013) Phase-defined complete sequencing of the HLA genes by next-generation sequencing. BMC Genomics, 14, 355.
    • (2013) BMC Genomics , vol.14 , pp. 355
    • Hosomichi, K.1    Jinam, T.A.2    Mitsunaga, S.3    Nakaoka, H.4    Inoue, I.5
  • 35
    • 0026865024 scopus 로고
    • Preferential PCR amplification of alleles: Mechanisms and solutions
    • Walsh, P.S., Erlich, H.A. and Higuchi, R. (1992) Preferential PCR amplification of alleles: mechanisms and solutions. Genome Res., 1, 241-250.
    • (1992) Genome Res , vol.1 , pp. 241-250
    • Walsh, P.S.1    Erlich, H.A.2    Higuchi, R.3
  • 36
    • 0031963327 scopus 로고    scopus 로고
    • High-resolution HLA typing for the DQB1 gene by sequence-based typing
    • Voorter, C.E., Kik, M.C. and van den Berg-Loonen, E.M. (1998) High-resolution HLA typing for the DQB1 gene by sequence-based typing. Tissue Antigens, 51, 80-87.
    • (1998) Tissue Antigens , vol.51 , pp. 80-87
    • Voorter, C.E.1    Kik, M.C.2    Vanden Berg-Loonen, E.M.3
  • 37
    • 84879933550 scopus 로고    scopus 로고
    • Haplotype assembly in polyploid genomes and identical by descent shared tracts
    • Aguiar, D. and Istrail, S. (2013) Haplotype assembly in polyploid genomes and identical by descent shared tracts. Bioinformatics, 29, i352-i360.
    • (2013) Bioinformatics , vol.29 , pp. i352-i360
    • Aguiar, D.1    Istrail, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.