-
1
-
-
84881477852
-
A latent capacity for evolutionary innovation through exaptation in metabolic systems
-
Barve,A. and Wagner,A. (2013) A latent capacity for evolutionary innovation through exaptation in metabolic systems. Nature, 500, 203-206.
-
(2013)
Nature
, vol.500
, pp. 203-206
-
-
Barve, A.1
Wagner, A.2
-
2
-
-
0036286631
-
Energy balance for analysis of complex metabolic networks
-
Beard,D.A. et al. (2002) Energy balance for analysis of complex metabolic networks. Biophys. J., 83, 79-86.
-
(2002)
Biophys. J.
, vol.83
, pp. 79-86
-
-
Beard, D.A.1
-
3
-
-
78049304837
-
Sampling the solution space in genome-scale metabolic networks reveals transcriptional regulation in key enzymes
-
Bordel,S. et al. (2010) Sampling the solution space in genome-scale metabolic networks reveals transcriptional regulation in key enzymes. PLoS Comput. Biol., 6, e1000859.
-
(2010)
PLoS Comput. Biol.
, vol.6
, pp. e1000859
-
-
Bordel, S.1
-
5
-
-
70049110173
-
Interpreting expression data with metabolic flux models: Predicting Mycobacterium tuberculosis mycolic acid production
-
Colijn,C. et al. (2009) Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production. PLoS Comput. Biol., 5, e1000489.
-
(2009)
PLoS Comput. Biol.
, vol.5
, pp. e1000489
-
-
Colijn, C.1
-
6
-
-
84988350465
-
Counting and correcting thermodynamically infeasible flux cycles in genome-scale metabolic networks
-
De Martino,D. et al. (2013) Counting and correcting thermodynamically infeasible flux cycles in genome-scale metabolic networks. Metabolites, 3, 946-966.
-
(2013)
Metabolites
, vol.3
, pp. 946-966
-
-
De Martino, D.1
-
7
-
-
34347332311
-
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
-
Feist,A.M. et al. (2007) A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Mol. Syst. Biol., 3, 121.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 121
-
-
Feist, A.M.1
-
8
-
-
84887364569
-
Sybil-Efficient constraint-based modelling in R
-
Gelius-Dietrich,G. et al. (2013) sybil-Efficient constraint-based modelling in R. BMC Syst. Biol., 7, 125.
-
(2013)
BMC Syst. Biol.
, vol.7
, pp. 125
-
-
Gelius-Dietrich, G.1
-
9
-
-
3242795003
-
The principle of flux minimization and its application to estimate stationary fluxes in metabolic networks
-
Holzhütter,H.-G. (2004) The principle of flux minimization and its application to estimate stationary fluxes in metabolic networks. Federation Eur. Biochem. Soc. J., 271, 2905-2922.
-
(2004)
Federation Eur. Biochem. Soc. J.
, vol.271
, pp. 2905-2922
-
-
Holzhütter, H.-G.1
-
10
-
-
77955141026
-
Omic data from evolved E. Coli are consistent with computed optimal growth from genome-scale models
-
Lewis,N. E. et al. (2010) Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models.Mol. Syst. Biol., 6, 390.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 390
-
-
Lewis, N.E.1
-
11
-
-
84858439602
-
Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods
-
Lewis,N.E. et al. (2012) Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods. Nat. Rev. Microbiol., 10, 291-305.
-
(2012)
Nat. Rev. Microbiol.
, vol.10
, pp. 291-305
-
-
Lewis, N.E.1
-
12
-
-
1642457253
-
The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
-
Mahadevan,R. and Schilling,C. (2003) The effects of alternate optimal solutions in constraint-based genome-scale metabolic models. Metab. Eng., 5, 264-276.
-
(2003)
Metab. Eng.
, vol.5
, pp. 264-276
-
-
Mahadevan, R.1
Schilling, C.2
-
13
-
-
65649126379
-
Connecting extracellular metabolomic measurements to intracellular flux states in yeast
-
Mo,M.L. et al. (2009) Connecting extracellular metabolomic measurements to intracellular flux states in yeast. BMC Syst. Biol., 3, 37.
-
(2009)
BMC Syst. Biol.
, vol.3
, pp. 37
-
-
Mo, M.L.1
-
14
-
-
77749320898
-
What is flux balance analysis?
-
Orth,J.D. et al. (2010) What is flux balance analysis? Nat. Biotechnol., 28, 245-248.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 245-248
-
-
Orth, J.D.1
-
15
-
-
28444475529
-
Adaptive evolution of bacterial metabolic networks by horizontal gene transfer
-
Pál,C. et al. (2005) Adaptive evolution of bacterial metabolic networks by horizontal gene transfer. Nat. Genet., 37, 1372-1375.
-
(2005)
Nat. Genet.
, vol.37
, pp. 1372-1375
-
-
Pál, C.1
-
16
-
-
33646182934
-
An integrated view of protein evolution
-
Pál,C. et al. (2006) An integrated view of protein evolution. Nat. Rev. Genet., 7, 337-348.
-
(2006)
Nat. Rev. Genet.
, vol.7
, pp. 337-348
-
-
Pál, C.1
-
17
-
-
77956419824
-
Reconstruction and flux-balance analysis of the Plasmodium falciparum metabolic network
-
Plata,G. et al. (2010) Reconstruction and flux-balance analysis of the Plasmodium falciparum metabolic network. Mol. Syst. Biol., 6, 408.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 408
-
-
Plata, G.1
-
18
-
-
0036840340
-
Extreme pathways and Kirchhoff's second law
-
Price,N.D. et al. (2002) Extreme pathways and Kirchhoff's second law. Biophys. J., 83, 2879-2882.
-
(2002)
Biophys. J.
, vol.83
, pp. 2879-2882
-
-
Price, N.D.1
-
20
-
-
77951612556
-
BiGG: A Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions Database
-
Schellenberger,J. et al. (2010) BiGG: A Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions Database. BMC Bioinformatics, 11, 213.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 213
-
-
Schellenberger, J.1
-
21
-
-
79551676901
-
Elimination of thermodynamically infeasible loops in steady-state metabolic models
-
Schellenberger,J. et al. (2011) Elimination of thermodynamically infeasible loops in steady-state metabolic models. Biophys. J., 100, 544-553.
-
(2011)
Biophys. J.
, vol.100
, pp. 544-553
-
-
Schellenberger, J.1
-
22
-
-
0034615791
-
Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathwayoriented perspective
-
Schilling,C.H. et al. (2000) Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathwayoriented perspective. J. Theor. Biol., 203, 229-248.
-
(2000)
J. Theor. Biol.
, vol.203
, pp. 229-248
-
-
Schilling, C.H.1
-
23
-
-
84860487758
-
Multidimensional Optimality of Microbial Metabolism
-
Schuetz,R. et al. (2012) Multidimensional Optimality of Microbial Metabolism. Science, 336, 601-604.
-
(2012)
Science
, vol.336
, pp. 601-604
-
-
Schuetz, R.1
-
24
-
-
0000029295
-
On elementary flux modes in biochemical reaction systems at steady state
-
Schuster,S. and Hilgetag,C. (1994) On elementary flux modes in biochemical reaction systems at steady state. J. Biol. Syst., 2, 165-182.
-
(1994)
J. Biol. Syst.
, vol.2
, pp. 165-182
-
-
Schuster, S.1
Hilgetag, C.2
-
25
-
-
43449132092
-
Is maximization of molar yield in metabolic networks favoured by evolution?
-
Schuster,S. et al. (2008) Is maximization of molar yield in metabolic networks favoured by evolution? J. Theor. Biol., 252, 497-504.
-
(2008)
J. Theor. Biol.
, vol.252
, pp. 497-504
-
-
Schuster, S.1
-
26
-
-
48249155053
-
Exhaustive identification of steady state cycles in large stoichiometric networks
-
Wright,J. and Wagner,A. (2008) Exhaustive identification of steady state cycles in large stoichiometric networks. BMC Systems Biol., 2, 61.
-
(2008)
BMC Systems Biol.
, vol.2
, pp. 61
-
-
Wright, J.1
Wagner, A.2
|