-
1
-
-
33748297696
-
Bacterial elicitation and evasion of plant innate immunity
-
PID: 16936700, COI: 1:CAS:528:DC%2BD28Xot1Cqu7w%3D
-
Abramovitch RB, Anderson JC, Martin GB (2006) Bacterial elicitation and evasion of plant innate immunity. Nat Rev Mol Cell Biol 7:601–611. doi:10.1038/nrm1984
-
(2006)
Nat Rev Mol Cell Biol
, vol.7
, pp. 601-611
-
-
Abramovitch, R.B.1
Anderson, J.C.2
Martin, G.B.3
-
2
-
-
78650921526
-
Rice xa13 recessive resistance to bacterial blight is defeated by induction of the disease susceptibility gene Os-11N3
-
PID: 21098734, COI: 1:CAS:528:DC%2BC3MXlsVCjsg%3D%3D
-
Antony G, Zhou J, Huang S, Li T, Liu B, White F, Yang B (2010) Rice xa13 recessive resistance to bacterial blight is defeated by induction of the disease susceptibility gene Os-11N3. Plant cell 22:3864–3876. doi:10.1105/tpc.110.078964
-
(2010)
Plant cell
, vol.22
, pp. 3864-3876
-
-
Antony, G.1
Zhou, J.2
Huang, S.3
Li, T.4
Liu, B.5
White, F.6
Yang, B.7
-
3
-
-
84863952738
-
High-throughput genomic sequencing of cassava bacterial blight strains identifies conserved effectors to target for durable resistance
-
PID: 22699502, COI: 1:CAS:528:DC%2BC38Xht1Wqtb7M
-
Bart R, Cohn M, Kassen A, McCallum EJ, Shybut M, Petriello A, Krasileva K, Dahlbeck D, Medina C, Alicai T, Kumar L, Moreira LM, Rodrigues Neto J, Verdier V, Santana MA, Kositcharoenkul N, Vanderschuren H, Gruissem W, Bernal A, Staskawicz BJ (2012) High-throughput genomic sequencing of cassava bacterial blight strains identifies conserved effectors to target for durable resistance. Proc Natl Acad Sci USA 109(28):E1972–E1979. doi:10.1073/pnas.1208003109
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.28
, pp. E1972-E1979
-
-
Bart, R.1
Cohn, M.2
Kassen, A.3
McCallum, E.J.4
Shybut, M.5
Petriello, A.6
Krasileva, K.7
Dahlbeck, D.8
Medina, C.9
Alicai, T.10
Kumar, L.11
Moreira, L.M.12
Rodrigues Neto, J.13
Verdier, V.14
Santana, M.A.15
Kositcharoenkul, N.16
Vanderschuren, H.17
Gruissem, W.18
Bernal, A.19
Staskawicz, B.J.20
more..
-
4
-
-
72149110399
-
Breaking the code of DNA binding specificity of TAL-type III effectors
-
PID: 19933107, COI: 1:CAS:528:DC%2BD1MXhsFensbnL
-
Boch J, Scholze H, Schornack S, Landgraf A, Hahn S, Kay S, Lahaye T, Nickstadt A, Bonas U (2009) Breaking the code of DNA binding specificity of TAL-type III effectors. Science 326:1509–1512. doi:10.1126/science.1178811
-
(2009)
Science
, vol.326
, pp. 1509-1512
-
-
Boch, J.1
Scholze, H.2
Schornack, S.3
Landgraf, A.4
Hahn, S.5
Kay, S.6
Lahaye, T.7
Nickstadt, A.8
Bonas, U.9
-
5
-
-
77955088422
-
TAL effectors: finding plant genes for disease and defense
-
PID: 20570209, COI: 1:CAS:528:DC%2BC3cXpt1Ojsr4%3D
-
Bogdanove AJ, Schornack S, Lahaye T (2010) TAL effectors: finding plant genes for disease and defense. Curr Opin Plant Biol 13:394–401. doi:10.1016/j.pbi.2010.04.010
-
(2010)
Curr Opin Plant Biol
, vol.13
, pp. 394-401
-
-
Bogdanove, A.J.1
Schornack, S.2
Lahaye, T.3
-
6
-
-
84870502053
-
TALE1 from Xanthomonas axonopodis pv. manihotis acts as a transcriptional activator in plant cells and is important for pathogenicity in cassava plants
-
PID: 22947214, COI: 1:CAS:528:DC%2BC38Xhsl2lsrrF
-
Castiblanco LF, Gil J, Rojas A, Osorio D, Perez Quintero AL, Koebnik R, Szurek B, López C, Restrepo S, Verdier V, Bernal AJ (2013) TALE1 from Xanthomonas axonopodis pv. manihotis acts as a transcriptional activator in plant cells and is important for pathogenicity in cassava plants. Mol Plant Pathol 14:84–95. doi:10.1016/j.pbi.2010.04.010
-
(2013)
Mol Plant Pathol
, vol.14
, pp. 84-95
-
-
Castiblanco, L.F.1
Gil, J.2
Rojas, A.3
Osorio, D.4
Perez Quintero, A.L.5
Koebnik, R.6
Szurek, B.7
López, C.8
Restrepo, S.9
Verdier, V.10
Bernal, A.J.11
-
7
-
-
78649481757
-
Sugar transporters for intercellular exchange and nutrition of pathogens
-
PID: 21107422, COI: 1:CAS:528:DC%2BC3cXhsVOrsbbM
-
Chen LQ, Hou B, Lalonde S, Takanaga H, Hartung ML, Qu X, Guo W, Kim JG, Underwood W, Chaudhuri B, Chermak D, Antony G, White FF, Somerville SC, Mudgett MB, Frommer WB (2010) Sugar transporters for intercellular exchange and nutrition of pathogens. Nature 468:527–532. doi:10.1038/nature09606
-
(2010)
Nature
, vol.468
, pp. 527-532
-
-
Chen, L.Q.1
Hou, B.2
Lalonde, S.3
Takanaga, H.4
Hartung, M.L.5
Qu, X.6
Guo, W.7
Kim, J.G.8
Underwood, W.9
Chaudhuri, B.10
Chermak, D.11
Antony, G.12
White, F.F.13
Somerville, S.C.14
Mudgett, M.B.15
Frommer, W.B.16
-
8
-
-
32944479048
-
Host-microbe interactions: shaping the evolution of the plant immune response
-
PID: 16497589, COI: 1:CAS:528:DC%2BD28Xit1Kltbw%3D
-
Chisholm ST, Coaker G, Day B, Staskawicz BJ (2006) Host-microbe interactions: shaping the evolution of the plant immune response. Cell 124:803–814. doi:10.1016/j.cell.2006.02.008
-
(2006)
Cell
, vol.124
, pp. 803-814
-
-
Chisholm, S.T.1
Coaker, G.2
Day, B.3
Staskawicz, B.J.4
-
9
-
-
84861109134
-
PLEXdb: gene expression resources for plants and plant pathogens
-
PID: 22084198, COI: 1:CAS:528:DC%2BC3MXhs12hurjJ
-
Dash S, Van Hemert J, Hong L, Wise RP, Dickerson JA (2012) PLEXdb: gene expression resources for plants and plant pathogens. Nucleic Acids Res 40:D1194–D1201. doi:10.1093/nar/gkr938
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D1194-D1201
-
-
Dash, S.1
Van Hemert, J.2
Hong, L.3
Wise, R.P.4
Dickerson, J.A.5
-
10
-
-
84868203856
-
Catch me if you can: bacterial effectors and plant targets
-
PID: 22796464, COI: 1:CAS:528:DC%2BC38XhtVektLrI
-
Deslandes L, Rivas S (2012) Catch me if you can: bacterial effectors and plant targets. Trends Plant Sci 17:644–655. doi:10.1016/j.tplants.2012.06.011
-
(2012)
Trends Plant Sci
, vol.17
, pp. 644-655
-
-
Deslandes, L.1
Rivas, S.2
-
11
-
-
84880938470
-
TAL effectors: highly adaptable phytobacterial virulence factors and readily engineered DNA-targeting proteins
-
COI: 1:CAS:528:DC%2BC3sXoslajuro%3D
-
Doyle EL, Stoddard BL, Voytas DF, Bogdanove AJ (2013) TAL effectors: highly adaptable phytobacterial virulence factors and readily engineered DNA-targeting proteins. Trends Cell Bio 23:390–398. doi:10.1016/j.tcb.2013.04.003
-
(2013)
Trends Cell Bio
, vol.23
, pp. 390-398
-
-
Doyle, E.L.1
Stoddard, B.L.2
Voytas, D.F.3
Bogdanove, A.J.4
-
12
-
-
77954299992
-
agriGO: a GO analysis toolkit for the agricultural community
-
PID: 20435677, COI: 1:CAS:528:DC%2BC3cXotVSqtL0%3D
-
Du Z, Zhou X, Ling Y, Zhang Z, Su Z (2010) agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res 38:W64–W70. doi:10.1093/nar/gkq310
-
(2010)
Nucleic Acids Res
, vol.38
, pp. W64-W70
-
-
Du, Z.1
Zhou, X.2
Ling, Y.3
Zhang, Z.4
Su, Z.5
-
13
-
-
0036081355
-
Gene expression omnibus: nCBI gene expression and hybridization array data repository
-
PID: 11752295, COI: 1:CAS:528:DC%2BD38Xht12kurs%3D
-
Edgar R, Domrachev M, Lash AE (2002) Gene expression omnibus: nCBI gene expression and hybridization array data repository. Nucleic Acids Res 30:207–210. doi:10.1093/nar/30.1.20
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
14
-
-
24944436247
-
Contrasting mechanisms of defense against biotrophic and necrotrophic pathogens
-
COI: 1:CAS:528:DC%2BD2MXhtVOksrrN
-
Glazebrook J (2005) Contrasting mechanisms of defense against biotrophic and necrotrophic pathogens. Annu Rev of Phytopathol 43:205–227. doi:10.1146/annurev.phyto.43.040204.135923
-
(2005)
Annu Rev of Phytopathol
, vol.43
, pp. 205-227
-
-
Glazebrook, J.1
-
15
-
-
84876009936
-
Computational predictions provide insights into the biology of TAL effector target sites
-
PID: 23526890, COI: 1:CAS:528:DC%2BC3sXlvVamu7k%3D
-
Grau J, Wolf A, Reschke M, Bonas U, Posch S, Boch J (2013) Computational predictions provide insights into the biology of TAL effector target sites. PLoS Comput Biol 9:e1002962. doi:10.1371/journal.pcbi.1002962
-
(2013)
PLoS Comput Biol
, vol.9
, pp. e1002962
-
-
Grau, J.1
Wolf, A.2
Reschke, M.3
Bonas, U.4
Posch, S.5
Boch, J.6
-
16
-
-
68149153070
-
Host-pathogen warfare at the plant cell wall
-
PID: 19616468
-
Hématy K, Cherk C, Somerville S (2009) Host-pathogen warfare at the plant cell wall. Curr Opin Plant Biol 12:406–413. doi:10.1016/j.pbi.2009.06.007
-
(2009)
Curr Opin Plant Biol
, vol.12
, pp. 406-413
-
-
Hématy, K.1
Cherk, C.2
Somerville, S.3
-
17
-
-
0035543162
-
Vascular defense responses in rice: peroxidase accumulation in xylem parenchyma cells and xylem wall thickening
-
PID: 11768536, COI: 1:CAS:528:DC%2BD3MXpt1SmsLc%3D
-
Hilaire E, Young SA, Willard LH, McGee JD, Sweat T, Chittoor JM, Guikema JA, Leach JE (2001) Vascular defense responses in rice: peroxidase accumulation in xylem parenchyma cells and xylem wall thickening. Mol Plant Microbe Interact 14:1411–1419. doi:10.1094/MPMI.2001.14.12.1411
-
(2001)
Mol Plant Microbe Interact
, vol.14
, pp. 1411-1419
-
-
Hilaire, E.1
Young, S.A.2
Willard, L.H.3
McGee, J.D.4
Sweat, T.5
Chittoor, J.M.6
Guikema, J.A.7
Leach, J.E.8
-
18
-
-
0033787109
-
Genetic mapping of resistance to bacterial blight disease in cassava (Manihot esculenta Crantz)
-
COI: 1:CAS:528:DC%2BD3cXosFyhu7g%3D
-
Jorge V, Fregene M, Duque MC, Bonierbale MW, Tohme J, Verdier V (2000) Genetic mapping of resistance to bacterial blight disease in cassava (Manihot esculenta Crantz). Theor Appl Genet 101:865–872. doi:10.1007/s001220051554
-
(2000)
Theor Appl Genet
, vol.101
, pp. 865-872
-
-
Jorge, V.1
Fregene, M.2
Duque, M.C.3
Bonierbale, M.W.4
Tohme, J.5
Verdier, V.6
-
19
-
-
0035085165
-
QTL analysis of field resistance to Xanthomonas axonopodis pv. manihotis in cassava
-
Jorge V, Fregene M, Vélez CM, Tohme DJ, Verdier V (2001) QTL analysis of field resistance to Xanthomonas axonopodis pv. manihotis in cassava. Theor Appl Genet 102:564–571. doi:10.1007/s001220051683
-
(2001)
Theor Appl Genet
, vol.102
, pp. 564-571
-
-
Jorge, V.1
Fregene, M.2
Vélez, C.M.3
Tohme, D.J.4
Verdier, V.5
-
20
-
-
44349195100
-
COI1 is a critical component of a receptor for jasmonate and the bacterial virulence factor coronatine
-
PID: 18458331, COI: 1:CAS:528:DC%2BD1cXmt1Gmurc%3D
-
Katsir L, Schilmiller AL, Staswick PE, He SY, Howe GA (2008) COI1 is a critical component of a receptor for jasmonate and the bacterial virulence factor coronatine. Proc Natl Acad Sci USA 105:7100–7105. doi:10.1073/pnas.0802332105
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 7100-7105
-
-
Katsir, L.1
Schilmiller, A.L.2
Staswick, P.E.3
He, S.Y.4
Howe, G.A.5
-
21
-
-
35548942766
-
A bacterial effector acts as a plant transcription factor and induces a cell size regulator
-
PID: 17962565, COI: 1:CAS:528:DC%2BD2sXhtF2rsbfP
-
Kay S, Hahn S, Marois E, Hause G, Bonas U (2007) A bacterial effector acts as a plant transcription factor and induces a cell size regulator. Science 318:648–651. doi:10.1126/science.1144956
-
(2007)
Science
, vol.318
, pp. 648-651
-
-
Kay, S.1
Hahn, S.2
Marois, E.3
Hause, G.4
Bonas, U.5
-
22
-
-
0029856890
-
Cytochemistry of defense responses in cassava infected by Xanthomonas campestris pv. manihotis
-
Kpémoua K, Boher B, Nicole M, Calatayund P, Geiger JP (1996) Cytochemistry of defense responses in cassava infected by Xanthomonas campestris pv. manihotis. Can J of Microbiol 42:1131–1143. doi:10.1139/m96-145
-
(1996)
Can J of Microbiol
, vol.42
, pp. 1131-1143
-
-
Kpémoua, K.1
Boher, B.2
Nicole, M.3
Calatayund, P.4
Geiger, J.P.5
-
23
-
-
0036017859
-
Cross talk between signaling pathways in pathogen defense
-
PID: 12179966, COI: 1:CAS:528:DC%2BD38Xls1ejtLs%3D
-
Kunkel BN, Brooks DM (2002) Cross talk between signaling pathways in pathogen defense. Curr Opin Plant Biol 5:325–331. doi:10.1016/S1369-5266(02)00275-3
-
(2002)
Curr Opin Plant Biol
, vol.5
, pp. 325-331
-
-
Kunkel, B.N.1
Brooks, D.M.2
-
24
-
-
84859600180
-
Cassava bacterial blight: using genomics for the elucidation and management of an old problem
-
López CE, Bernal AJ (2012) Cassava bacterial blight: using genomics for the elucidation and management of an old problem. Trop Plant Biol 5:117–126. doi:10.1007/s12042-011-9092-3
-
(2012)
Trop Plant Biol
, vol.5
, pp. 117-126
-
-
López, C.E.1
Bernal, A.J.2
-
25
-
-
0037217005
-
Identifying resistance gene analogs associated with resistances to different pathogens in common bean
-
PID: 18944161
-
López CE, Acosta IF, Jara C, Pedraza F, Gaitán-Solís E, Gallego G, Beebe S, Tohme J (2003) Identifying resistance gene analogs associated with resistances to different pathogens in common bean. Phytopathology 93:88–95. doi:10.1094/PHYTO.2003.93.1.88
-
(2003)
Phytopathology
, vol.93
, pp. 88-95
-
-
López, C.E.1
Acosta, I.F.2
Jara, C.3
Pedraza, F.4
Gaitán-Solís, E.5
Gallego, G.6
Beebe, S.7
Tohme, J.8
-
26
-
-
17744383849
-
Gene expression profile in response to Xanthomonas axonopodis pv. manihotis infection in cassava using a cDNA microarray
-
PID: 15830129
-
López C, Soto M, Restrepo S, Piégu B, Cooke R, Delseny M, Tohme J, Verdier V (2005) Gene expression profile in response to Xanthomonas axonopodis pv. manihotis infection in cassava using a cDNA microarray. Plant Mol Biol 57:393–410. doi:10.1007/s11103-004-7819-3
-
(2005)
Plant Mol Biol
, vol.57
, pp. 393-410
-
-
López, C.1
Soto, M.2
Restrepo, S.3
Piégu, B.4
Cooke, R.5
Delseny, M.6
Tohme, J.7
Verdier, V.8
-
27
-
-
0000084737
-
Cassava bacterial blight: a manageable disease
-
Lozano JC (1986) Cassava bacterial blight: a manageable disease. Plant Dis 70:1089–1093. doi:10.1094/PD-70-1089
-
(1986)
Plant Dis
, vol.70
, pp. 1089-1093
-
-
Lozano, J.C.1
-
28
-
-
76749155363
-
Antibacterial activity of phenolic compounds against the phytopathogen Xylella fastidiosa
-
PID: 19813054, COI: 1:CAS:528:DC%2BD1MXhsFyjsLnE
-
Maddox CE, Laur LM, Tian L (2010) Antibacterial activity of phenolic compounds against the phytopathogen Xylella fastidiosa. Curr Microbiol 60:53–58. doi:10.1007/s00284-009-9501-0
-
(2010)
Curr Microbiol
, vol.60
, pp. 53-58
-
-
Maddox, C.E.1
Laur, L.M.2
Tian, L.3
-
29
-
-
84857029597
-
The crystal structure of TAL effector PthXo1 bound to its DNA target
-
PID: 22223736, COI: 1:CAS:528:DC%2BC38XhvVCjs70%3D
-
Mak ANS, Bradley P, Cernadas R, Bogdanove AJ, Stoddard BL (2012) The crystal structure of TAL effector PthXo1 bound to its DNA target. Science 335:716–719. doi:10.1126/science.1216211
-
(2012)
Science
, vol.335
, pp. 716-719
-
-
Mak, A.N.S.1
Bradley, P.2
Cernadas, R.3
Bogdanove, A.J.4
Stoddard, B.L.5
-
31
-
-
33748143367
-
Could heat shock transcription factors function as hydrogen peroxide sensors in plants?
-
PID: 16740587, COI: 1:CAS:528:DC%2BD28Xpt1yltLk%3D
-
Miller G, Mittler R (2006) Could heat shock transcription factors function as hydrogen peroxide sensors in plants? Ann Bot 98:279–288. doi:10.1093/aob/mcl107
-
(2006)
Ann Bot
, vol.98
, pp. 279-288
-
-
Miller, G.1
Mittler, R.2
-
32
-
-
72149090954
-
A simple cipher governs DNA recognition by TAL effectors
-
PID: 19933106, COI: 1:CAS:528:DC%2BD1MXhsFensbjP
-
Moscou MJ, Bogdanove AJ (2009) A simple cipher governs DNA recognition by TAL effectors. Science 326:1501. doi:10.1126/science.1178817
-
(2009)
Science
, vol.326
, pp. 1501
-
-
Moscou, M.J.1
Bogdanove, A.J.2
-
33
-
-
79960957705
-
Independently evolved virulence effectors converge onto hubs in a plant immune system network
-
PID: 21798943, COI: 1:CAS:528:DC%2BC3MXpt1yisbo%3D
-
Mukhtar MS, Carvunis AR, Dreze M, Epple P, Steinbrenner J, Moore J, Tasan M, Galli M, Hao T, Nishimura MT, Pevzner SJ, Donovan SE, Ghamsari L, Santhanam B, Romero V, Poulin MM, Gebreab F, Gutierrez BJ, Tam S, Monachello D, Boxem M, Harbort CJ, McDonald N, Gai L, Chen H, He Y, Vandenhaute J, Roth FP, Hill DE, Ecker JR, Vidal M, Beynon J, Braun P, Dangl JL (2011) Independently evolved virulence effectors converge onto hubs in a plant immune system network. Science 333:596–601. doi:10.1126/science.1203659
-
(2011)
Science
, vol.333
, pp. 596-601
-
-
Mukhtar, M.S.1
Carvunis, A.R.2
Dreze, M.3
Epple, P.4
Steinbrenner, J.5
Moore, J.6
Tasan, M.7
Galli, M.8
Hao, T.9
Nishimura, M.T.10
Pevzner, S.J.11
Donovan, S.E.12
Ghamsari, L.13
Santhanam, B.14
Romero, V.15
Poulin, M.M.16
Gebreab, F.17
Gutierrez, B.J.18
Tam, S.19
Monachello, D.20
Boxem, M.21
Harbort, C.J.22
McDonald, N.23
Gai, L.24
Chen, H.25
He, Y.26
Vandenhaute, J.27
Roth, F.P.28
Hill, D.E.29
Ecker, J.R.30
Vidal, M.31
Beynon, J.32
Braun, P.33
Dangl, J.L.34
more..
-
35
-
-
3042530074
-
The transcriptional innate immune Rresponse to flg22. Interplay and overlap with Avr gene-dependent defense responses and bacterial pathogenesis
-
PID: 15181213, COI: 1:CAS:528:DC%2BD2cXltlKis7Y%3D
-
Navarro L, Zipfel C, Rowland O, Keller I, Robatzek S, Boller T, Jones JDG (2004) The transcriptional innate immune Rresponse to flg22. Interplay and overlap with Avr gene-dependent defense responses and bacterial pathogenesis. Plant Physiol 135:1113–1128. doi:10.1104/pp.103.036749.1
-
(2004)
Plant Physiol
, vol.135
, pp. 1113-1128
-
-
Navarro, L.1
Zipfel, C.2
Rowland, O.3
Keller, I.4
Robatzek, S.5
Boller, T.6
Jones, J.D.G.7
-
36
-
-
84862777553
-
The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition
-
PID: 22244999, COI: 1:CAS:528:DC%2BC38Xhs1Cqt70%3D
-
Pajerowska-mukhtar KM, Wang W, Tada Y, Oka N, Tucker CL, Fonseca JP, Dong X (2012) The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition. Curr Biol 22:103–112. doi:10.1016/j.cub.2011.12.015
-
(2012)
Curr Biol
, vol.22
, pp. 103-112
-
-
Pajerowska-mukhtar, K.M.1
Wang, W.2
Tada, Y.3
Oka, N.4
Tucker, C.L.5
Fonseca, J.P.6
Dong, X.7
-
37
-
-
84880274835
-
An improved method for TAL effectors DNA-binding sites prediction reveals functional convergence in TAL repertoires of Xanthomonas oryzae strains
-
PID: 23869221
-
Pérez-Quintero AL, Rodriguez-R LM, Dereeper A, López C, Koebnik R, Szurek B, Cunnac S (2013) An improved method for TAL effectors DNA-binding sites prediction reveals functional convergence in TAL repertoires of Xanthomonas oryzae strains. PLoS One 8:e68464. doi:10.1371/journal.pone.0068464
-
(2013)
PLoS One
, vol.8
, pp. e68464
-
-
Pérez-Quintero, A.L.1
Rodriguez-R, L.M.2
Dereeper, A.3
López, C.4
Koebnik, R.5
Szurek, B.6
Cunnac, S.7
-
38
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
PID: 11328886, COI: 1:STN:280:DC%2BD38nis12jtw%3D%3D
-
Pfaffl MW (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29:e45. doi:10.1093/nar/29.9.e45
-
(2001)
Nucleic Acids Res
, vol.29
, pp. e45
-
-
Pfaffl, M.W.1
-
39
-
-
65349121783
-
Networking by small-molecule hormones in plant immunity
-
PID: 19377457, COI: 1:CAS:528:DC%2BD1MXks12ktL4%3D
-
Pieterse CMJ, Leon-Reyes A, Van der Ent S, Van Wees SCM (2009) Networking by small-molecule hormones in plant immunity. Nat Chem Biol 5:308–316. doi:10.1038/nchembio.164
-
(2009)
Nat Chem Biol
, vol.5
, pp. 308-316
-
-
Pieterse, C.M.J.1
Leon-Reyes, A.2
Van der Ent, S.3
Van Wees, S.C.M.4
-
40
-
-
84859560380
-
The cassava genome: current progress, future directions
-
PID: 22523606, COI: 1:CAS:528:DC%2BC38XlsVWisrw%3D
-
Prochnik S, Marri PR, Desany B, Rabinowicz PD, Kodira C, Mohiuddin M, Rodriguez F, Fauquet C, Tohme J, Harkins T, Rokhsar DS, Rounsley S (2012) The cassava genome: current progress, future directions. Trop Plant Biol 5:88–94. doi:10.1007/s12042-011-9088-z
-
(2012)
Trop Plant Biol
, vol.5
, pp. 88-94
-
-
Prochnik, S.1
Marri, P.R.2
Desany, B.3
Rabinowicz, P.D.4
Kodira, C.5
Mohiuddin, M.6
Rodriguez, F.7
Fauquet, C.8
Tohme, J.9
Harkins, T.10
Rokhsar, D.S.11
Rounsley, S.12
-
41
-
-
79959812762
-
The Jasmonate-ZIM-domain proteins interact with the WD-Repeat/bHLH/MYB complexes to regulate Jasmonate-mediated anthocyanin accumulation and trichome initiation in Arabidopsis thaliana
-
PID: 21551388, COI: 1:CAS:528:DC%2BC3MXptFWqsL8%3D
-
Qi T, Song S, Ren Q, Wu D, Huang H, Chen Y, Fan M, Peng W, Ren C, Xie D (2011) The Jasmonate-ZIM-domain proteins interact with the WD-Repeat/bHLH/MYB complexes to regulate Jasmonate-mediated anthocyanin accumulation and trichome initiation in Arabidopsis thaliana. Plant cell 23:1795–1814. doi:10.1105/tpc.111.083261
-
(2011)
Plant cell
, vol.23
, pp. 1795-1814
-
-
Qi, T.1
Song, S.2
Ren, Q.3
Wu, D.4
Huang, H.5
Chen, Y.6
Fan, M.7
Peng, W.8
Ren, C.9
Xie, D.10
-
42
-
-
0034507484
-
Characterization of pathotypes among isolates of Xanthomonas axonopodis pv. manihotis in Colombia
-
Restrepo S, Duque MC, Verdier V (2000) Characterization of pathotypes among isolates of Xanthomonas axonopodis pv. manihotis in Colombia. Plant Pathol 49:680–687. doi:10.1046/j.1365-3059.2000.00513.x
-
(2000)
Plant Pathol
, vol.49
, pp. 680-687
-
-
Restrepo, S.1
Duque, M.C.2
Verdier, V.3
-
43
-
-
80051746279
-
Hormone crosstalk in plant disease and defense: more than just jasmonate-salicylate antagonism
-
PID: 21663438, COI: 1:CAS:528:DC%2BC3MXhtFOhtrjI
-
Robert-Seilaniantz A, Grant M, Jones JDG (2011) Hormone crosstalk in plant disease and defense: more than just jasmonate-salicylate antagonism. Annu Rev Phytopathol 49:317–343. doi:10.1146/annurev-phyto-073009-114447
-
(2011)
Annu Rev Phytopathol
, vol.49
, pp. 317-343
-
-
Robert-Seilaniantz, A.1
Grant, M.2
Jones, J.D.G.3
-
44
-
-
84859595050
-
Examining cassava’s potential to enhance food security under climate change
-
Rosenthal DM, Ort DR (2012) Examining cassava’s potential to enhance food security under climate change. Trop Plant Biol 5:30–38. doi:10.1007/s12042-011-9086-1
-
(2012)
Trop Plant Biol
, vol.5
, pp. 30-38
-
-
Rosenthal, D.M.1
Ort, D.R.2
-
45
-
-
9944257097
-
Identification of genes in cassava that are differentially expressed during infection with Xanthomonas axonopodis pv. manihotis
-
PID: 20565629, COI: 1:CAS:528:DC%2BD2MXit1emsw%3D%3D
-
Santaella M, Suárez E, López C, González C, Mosquera G, Restrepo S, Tohme J, Badillo A, Verdier V (2004) Identification of genes in cassava that are differentially expressed during infection with Xanthomonas axonopodis pv. manihotis. Mol Plant Pathol 5:549–558. doi:10.1111/J.1364-3703.2004.00254.X
-
(2004)
Mol Plant Pathol
, vol.5
, pp. 549-558
-
-
Santaella, M.1
Suárez, E.2
López, C.3
González, C.4
Mosquera, G.5
Restrepo, S.6
Tohme, J.7
Badillo, A.8
Verdier, V.9
-
46
-
-
84856613886
-
The plant heat stress transcription factor (Hsf) family: structure, function and evolution
-
PID: 22033015, COI: 1:CAS:528:DC%2BC38XhvVaju7s%3D
-
Scharf KD, Berberich T, Ebersberger I, Nover L (2012) The plant heat stress transcription factor (Hsf) family: structure, function and evolution. Biochim Biophys Acta 1819:104–119. doi:10.1016/j.bbagrm.2011.10.002
-
(2012)
Biochim Biophys Acta
, vol.1819
, pp. 104-119
-
-
Scharf, K.D.1
Berberich, T.2
Ebersberger, I.3
Nover, L.4
-
47
-
-
84862992207
-
Overall picture of expressed heat shock factors in glycine max, Lotus japonicus and Medicago truncatula
-
PID: 22802710, COI: 1:CAS:528:DC%2BC38Xht1yhsbjP
-
Soares-Cavalcanti NM, Belarmino LC, Kido E, Pandolfi V, Marcelino-Guimarães FC, Rodrigues F, Pereira G, Benko-Iseppon AM (2012) Overall picture of expressed heat shock factors in glycine max, Lotus japonicus and Medicago truncatula. Genet Mol Biol 35:247–259. doi:10.1590/S1415-47572012000200006
-
(2012)
Genet Mol Biol
, vol.35
, pp. 247-259
-
-
Soares-Cavalcanti, N.M.1
Belarmino, L.C.2
Kido, E.3
Pandolfi, V.4
Marcelino-Guimarães, F.C.5
Rodrigues, F.6
Pereira, G.7
Benko-Iseppon, A.M.8
-
48
-
-
39749103394
-
JAZing up jasmonate signaling
-
PID: 18261950, COI: 1:CAS:528:DC%2BD1cXivVOntbg%3D
-
Staswick PE (2008) JAZing up jasmonate signaling. Trends Plant Sci 13:66–71. doi:10.1016/j.tplants.2007.11.011
-
(2008)
Trends Plant Sci
, vol.13
, pp. 66-71
-
-
Staswick, P.E.1
-
49
-
-
84885428402
-
Five phylogenetically close rice SWEET genes confer TAL effector-mediated susceptibility to Xanthomonas oryzae pv. oryzae
-
PID: 23879865, COI: 1:CAS:528:DC%2BC3sXhs1eltbnP
-
Streubel J, Pesce C, Hutin M, Koebnik R, Boch J, Szurek B (2013) Five phylogenetically close rice SWEET genes confer TAL effector-mediated susceptibility to Xanthomonas oryzae pv. oryzae. New Phytol 200:808–819. doi:10.1111/nph.12411
-
(2013)
New Phytol
, vol.200
, pp. 808-819
-
-
Streubel, J.1
Pesce, C.2
Hutin, M.3
Koebnik, R.4
Boch, J.5
Szurek, B.6
-
50
-
-
34547511837
-
Two type III effector genes of Xanthomonas oryzae pv. oryzae control the induction of the host genes OsTFIIAgamma1 and OsTFX1 during bacterial blight of rice
-
PID: 17563377, COI: 1:CAS:528:DC%2BD2sXnt1ygtbg%3D
-
Sugio A, Yang B, Zhu T, White FF (2007) Two type III effector genes of Xanthomonas oryzae pv. oryzae control the induction of the host genes OsTFIIAgamma1 and OsTFX1 during bacterial blight of rice. Proc Natl Acad Sci USA 104:10720–10725. doi:10.1073/pnas.0701742104
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 10720-10725
-
-
Sugio, A.1
Yang, B.2
Zhu, T.3
White, F.F.4
-
51
-
-
33745612095
-
Pvclust: an R package for assessing the uncertainty in hierarchical clustering
-
PID: 16595560, COI: 1:CAS:528:DC%2BD28XmsVensLg%3D
-
Suzuki R, Shimodaira H (2006) Pvclust: an R package for assessing the uncertainty in hierarchical clustering. Bioinformatics 22:1540–1542. doi:10.1093/bioinformatics/btl117
-
(2006)
Bioinformatics
, vol.22
, pp. 1540-1542
-
-
Suzuki, R.1
Shimodaira, H.2
-
52
-
-
34347265817
-
Transcriptional profiling of Arabidopsis heat shock proteins and transcription factors reveals extensive overlap between heat and non-heat stress response pathways
-
PID: 17519032
-
Swindell WR, Huebner M, Weber AP (2007) Transcriptional profiling of Arabidopsis heat shock proteins and transcription factors reveals extensive overlap between heat and non-heat stress response pathways. BMC Genomics 8:125. doi:10.1186/1471-2164-8-125
-
(2007)
BMC Genomics
, vol.8
, pp. 125
-
-
Swindell, W.R.1
Huebner, M.2
Weber, A.P.3
-
53
-
-
0037324536
-
Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringe
-
PID: 12566575, COI: 1:CAS:528:DC%2BD3sXhtlOmtLY%3D
-
Tao Y, Xie Z, Chen W, Glazebrook J, Chang H, Han B, Zhu T, Zou G, Katagiri F (2003) Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringe. Plant cell 15:317–330. doi:10.1105/tpc.007591.can
-
(2003)
Plant cell
, vol.15
, pp. 317-330
-
-
Tao, Y.1
Xie, Z.2
Chen, W.3
Glazebrook, J.4
Chang, H.5
Han, B.6
Zhu, T.7
Zou, G.8
Katagiri, F.9
-
54
-
-
83055192078
-
Differential expression in RNA-seq: a matter of depth
-
PID: 21903743, COI: 1:CAS:528:DC%2BC3MXhs1Wlur3M
-
Tarazona S, García-Alcalde F, Dopazo J, Ferrer A, Conesa A (2011) Differential expression in RNA-seq: a matter of depth. Genome Res 21:2213–2223. doi:10.1101/gr.124321.111.Freely
-
(2011)
Genome Res
, vol.21
, pp. 2213-2223
-
-
Tarazona, S.1
García-Alcalde, F.2
Dopazo, J.3
Ferrer, A.4
Conesa, A.5
-
55
-
-
79952302258
-
Of PAMPs and effectors: the blurred PTI-ETI dichotomy
-
PID: 21278123, COI: 1:CAS:528:DC%2BC3MXpsFansr0%3D
-
Thomma BPHJ, Nürnberger T, Joosten MHAJ (2011) Of PAMPs and effectors: the blurred PTI-ETI dichotomy. Plant cell 23:4–15. doi:10.1105/tpc.110.082602
-
(2011)
Plant cell
, vol.23
, pp. 4-15
-
-
Thomma, B.P.H.J.1
Nürnberger, T.2
Joosten, M.H.A.J.3
-
56
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
PID: 22383036, COI: 1:CAS:528:DC%2BC38Xjt1Cjsrc%3D
-
Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL, Pachter L (2012) Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc 7:562–578. doi:10.1038/nprot.2012.016
-
(2012)
Nat Protoc
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
Pimentel, H.7
Salzberg, S.L.8
Rinn, J.L.9
Pachter, L.10
-
57
-
-
33748658249
-
The type III effector repertoire of Pseudomonas syringae pv. syringae B728a and its role in survival and disease on host and non-host plants
-
PID: 16942603, COI: 1:CAS:528:DC%2BD28XhtFWgsLvE
-
Vinatzer B, Teitzel GM, Lee MW, Jelenska J, Hotton S, Fairfax K, Jenrette J, Greenberg JT (2006) The type III effector repertoire of Pseudomonas syringae pv. syringae B728a and its role in survival and disease on host and non-host plants. Mol Microbiol 62:26–44. doi:10.1111/j.1365-2958.2006.05350.x
-
(2006)
Mol Microbiol
, vol.62
, pp. 26-44
-
-
Vinatzer, B.1
Teitzel, G.M.2
Lee, M.W.3
Jelenska, J.4
Hotton, S.5
Fairfax, K.6
Jenrette, J.7
Greenberg, J.T.8
-
58
-
-
84878308492
-
Jasmonates: biosynthesis, perception, signal transduction and action in plant stress response, growth and development. An update to the 2007 review in annals of Botany
-
PID: 23558912, COI: 1:CAS:528:DC%2BC3sXoslWjs7c%3D
-
Wasternack C, Hause B (2013) Jasmonates: biosynthesis, perception, signal transduction and action in plant stress response, growth and development. An update to the 2007 review in annals of Botany. Ann Bot 111:1021–1058. doi:10.1093/aob/mct067
-
(2013)
Ann Bot
, vol.111
, pp. 1021-1058
-
-
Wasternack, C.1
Hause, B.2
-
59
-
-
4644345012
-
Identification of pathotypes of Xanthomonas axonopodis pv. manihotis in Africa and detection of quantitative trait loci and markers for resistance to bacterial blight of cassava
-
PID: 18943797, COI: 1:CAS:528:DC%2BD2cXovVCjurg%3D
-
Wydra K, Zinsou V, Jorge V, Verdier V (2004) Identification of pathotypes of Xanthomonas axonopodis pv. manihotis in Africa and detection of quantitative trait loci and markers for resistance to bacterial blight of cassava. Phytopathology 94:1084–1093. doi:10.1094/PHYTO.2004.94.10.1084
-
(2004)
Phytopathology
, vol.94
, pp. 1084-1093
-
-
Wydra, K.1
Zinsou, V.2
Jorge, V.3
Verdier, V.4
-
60
-
-
79959986975
-
KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases
-
PID: 21715386, COI: 1:CAS:528:DC%2BC3MXosVOmsr4%3D
-
Xie C, Mao X, Huang J, Ding Y, Wu J, Dong S, Kong L, Gao G, Li CY, Wei L (2011) KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases. Nucleic Acids Res 39:W316–W322. doi:10.1093/nar/gkr483
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W316-W322
-
-
Xie, C.1
Mao, X.2
Huang, J.3
Ding, Y.4
Wu, J.5
Dong, S.6
Kong, L.7
Gao, G.8
Li, C.Y.9
Wei, L.10
-
61
-
-
84893420486
-
The xylem as battleground for plant hosts and vascular wilt pathogens
-
PID: 23630534
-
Yadeta KA, Thomma BPHJ (2013) The xylem as battleground for plant hosts and vascular wilt pathogens. Front Plant Sci 4:97. doi:10.3389/fpls.2013.00097
-
(2013)
Front Plant Sci
, vol.4
, pp. 97
-
-
Yadeta, K.A.1
Thomma, B.P.H.J.2
-
62
-
-
33745894351
-
Os8N3 is a host disease-susceptibility gene for bacterial blight of rice
-
PID: 16798873, COI: 1:CAS:528:DC%2BD28XnsVSitbY%3D
-
Yang B, Sugio A, White FF (2006) Os8N3 is a host disease-susceptibility gene for bacterial blight of rice. Proc Natl Acad Sci USA 103:10503–10508. doi:10.1073/pnas.0604088103
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 10503-10508
-
-
Yang, B.1
Sugio, A.2
White, F.F.3
-
63
-
-
78651339097
-
AGRIS: the Arabidopsis gene regulatory information server, an update
-
PID: 21059685, COI: 1:CAS:528:DC%2BC3sXivF2lurY%3D
-
Yilmaz A, Mejia-Guerra MK, Kurz K, Liang X, Welch L, Grotewold E (2011) AGRIS: the Arabidopsis gene regulatory information server, an update. Nucleic Acids Res 39:D1118–D1122. doi:10.1093/nar/gkq1120
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D1118-D1122
-
-
Yilmaz, A.1
Mejia-Guerra, M.K.2
Kurz, K.3
Liang, X.4
Welch, L.5
Grotewold, E.6
-
64
-
-
80051599377
-
Colonization of rice leaf blades by an African strain of Xanthomonas oryzae pv. oryzae depends on a new TAL effector that induces the rice nodulin-3 Os11N3 gene
-
PID: 21679014, COI: 1:CAS:528:DC%2BC3MXhtVKhtrrJ
-
Yu Y, Streubel J, Balzergue S, Champion A, Boch J, Koebnik R, Feng J, Verdier V, Szurek B (2011) Colonization of rice leaf blades by an African strain of Xanthomonas oryzae pv. oryzae depends on a new TAL effector that induces the rice nodulin-3 Os11N3 gene. Mol Plant-Microbe Interact 24:1102–1113. doi:10.1094/MPMI-11-10-0254
-
(2011)
Mol Plant-Microbe Interact
, vol.24
, pp. 1102-1113
-
-
Yu, Y.1
Streubel, J.2
Balzergue, S.3
Champion, A.4
Boch, J.5
Koebnik, R.6
Feng, J.7
Verdier, V.8
Szurek, B.9
-
65
-
-
79961230772
-
High-throughput illumina strand-specific RNA sequencing library preparation
-
PID: 21807852
-
Zhong S, Joung JG, Zheng Y, Chen Y, Liu B, Shao Y, Xiang JZ, Fei Z, Giovannoni JJ (2011) High-throughput illumina strand-specific RNA sequencing library preparation. Cold Spring Harb Protoc 2011:940–949. doi:10.1101/pdb.prot5652
-
(2011)
Cold Spring Harb Protoc
, vol.2011
, pp. 940-949
-
-
Zhong, S.1
Joung, J.G.2
Zheng, Y.3
Chen, Y.4
Liu, B.5
Shao, Y.6
Xiang, J.Z.7
Fei, Z.8
Giovannoni, J.J.9
-
66
-
-
84867334126
-
An inhibitory effect of the sequence-conserved upstream open-reading frame on the translation of the main open-reading frame of HsfB1 transcripts in Arabidopsis
-
PID: 22571635, COI: 1:CAS:528:DC%2BC38XhsVKrtLjL
-
Zhu X, Thalor SK, Takahashi Y, Berberich T, Kusano T (2012) An inhibitory effect of the sequence-conserved upstream open-reading frame on the translation of the main open-reading frame of HsfB1 transcripts in Arabidopsis. Plant Cell Environ 35:2014–2030. doi:10.1111/j.1365-3040.2012.02533.x
-
(2012)
Plant Cell Environ
, vol.35
, pp. 2014-2030
-
-
Zhu, X.1
Thalor, S.K.2
Takahashi, Y.3
Berberich, T.4
Kusano, T.5
|