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Volumn 8, Issue 1, 2015, Pages

High-resolution characterization of sequence signatures due to non-random cleavage of cell-free DNA

Author keywords

apoptosis; biomarkers; Cell free DNA; extracellular DNA; fragment lengths; fragmentation motifs; higher order chromatin packaging; necrosis; nucleosomes

Indexed keywords

MITOCHONDRIAL DNA; DNA;

EID: 84935857045     PISSN: None     EISSN: 17558794     Source Type: Journal    
DOI: 10.1186/s12920-015-0107-z     Document Type: Article
Times cited : (108)

References (71)
  • 1
    • 84957852098 scopus 로고
    • Les acides nucléiques du plasma sanguin chez l'homme
    • 1:CAS:528:DyaH1cXjvFSrsg%3D%3D
    • Mandel P, Metais P. Les acides nucléiques du plasma sanguin chez l'homme. CR Acad Sci Paris. 1948;142:241-3.
    • (1948) CR Acad Sci Paris , vol.142 , pp. 241-243
    • Mandel, P.1    Metais, P.2
  • 2
    • 0035866393 scopus 로고    scopus 로고
    • DNA fragments in the blood plasma of cancer patients: Quantitations and evidence for their origin from apoptotic and necrotic cells
    • 1:CAS:528:DC%2BD3MXhvVelu74%3D 11245480
    • Jahr S, Hentze H, Englisch S, Hardt D, Fackelmayer FO, Hesch RD, et al. DNA fragments in the blood plasma of cancer patients: quantitations and evidence for their origin from apoptotic and necrotic cells. Cancer Res. 2001;61(4):1659-65.
    • (2001) Cancer Res , vol.61 , Issue.4 , pp. 1659-1665
    • Jahr, S.1    Hentze, H.2    Englisch, S.3    Hardt, D.4    Fackelmayer, F.O.5    Hesch, R.D.6
  • 3
    • 2642540027 scopus 로고    scopus 로고
    • Size separation of circulatory DNA in maternal plasma permits ready detection of fetal DNA polymorphisms
    • 1:CAS:528:DC%2BD2cXltFOjs7w%3D 15073090
    • Li Y, Zimmermann B, Rusterholz C, Kang A, Holzgreve W, Hahn S. Size separation of circulatory DNA in maternal plasma permits ready detection of fetal DNA polymorphisms. Clin Chem. 2004;50(6):1002-11.
    • (2004) Clin Chem , vol.50 , Issue.6 , pp. 1002-1011
    • Li, Y.1    Zimmermann, B.2    Rusterholz, C.3    Kang, A.4    Holzgreve, W.5    Hahn, S.6
  • 4
    • 0034750559 scopus 로고    scopus 로고
    • About the possible origin and mechanism of circulating DNA: Apoptosis and active DNA release
    • 1:CAS:528:DC%2BD3MXnvFGqur8%3D 11694251
    • Stroun M, Lyautey J, Lederrey C, Olson-Sand A, Anker P. About the possible origin and mechanism of circulating DNA: Apoptosis and active DNA release. Clin Chim Acta. 2001;313(1-2):139-42.
    • (2001) Clin Chim Acta , vol.313 , Issue.1-2 , pp. 139-142
    • Stroun, M.1    Lyautey, J.2    Lederrey, C.3    Olson-Sand, A.4    Anker, P.5
  • 5
    • 36649023930 scopus 로고    scopus 로고
    • The origin of circulating free DNA
    • 1:CAS:528:DC%2BD2sXhtl2qt7%2FN 18267930
    • van der Vaart M, Pretorius PJ. The origin of circulating free DNA. Clin Chem. 2007;53(12):2215.
    • (2007) Clin Chem , vol.53 , Issue.12 , pp. 2215
    • Van Der Vaart, M.1    Pretorius, P.J.2
  • 6
    • 17844374889 scopus 로고    scopus 로고
    • The role of macrophages in the in vitro generation of extracellular DNA from apoptotic and necrotic cells
    • 1:CAS:528:DC%2BD2MXjvFaqtrc%3D 1782131 15819697
    • Choi J-J, Reich CF, Pisetsky DS. The role of macrophages in the in vitro generation of extracellular DNA from apoptotic and necrotic cells. Immunology. 2005;115(1):55-62.
    • (2005) Immunology , vol.115 , Issue.1 , pp. 55-62
    • Choi, J.-J.1    Reich, C.F.2    Pisetsky, D.S.3
  • 7
    • 52249095547 scopus 로고    scopus 로고
    • Metabolic DNA as the origin of spontaneously released DNA?
    • 1:CAS:528:DC%2BD1cXhtF2qurzN 18837918
    • Gahan PB, Anker P, Stroun M. Metabolic DNA as the origin of spontaneously released DNA? Ann N Y Acad Sci. 2008;1137:7-17.
    • (2008) Ann N y Acad Sci , vol.1137 , pp. 7-17
    • Gahan, P.B.1    Anker, P.2    Stroun, M.3
  • 8
    • 84868272966 scopus 로고    scopus 로고
    • High resolution size analysis of fetal dna in the urine of pregnant women by paired-end massively parallel sequencing
    • 1:CAS:528:DC%2BC38XhslWjsLrP 3485143 23118982
    • Tsui NBY, Jiang P, Chow KCK, Su X, Leung TY, Sun H. High resolution size analysis of fetal dna in the urine of pregnant women by paired-end massively parallel sequencing. PLoS One. 2012;7(10):e48319.
    • (2012) PLoS One , vol.7 , Issue.10 , pp. 48319
    • Tsui, N.B.Y.1    Jiang, P.2    Chow, K.C.K.3    Su, X.4    Leung, T.Y.5    Sun, H.6
  • 9
    • 84880863124 scopus 로고    scopus 로고
    • High-resolution profiling of fetal DNA clearance from maternal plasma by massively parallel sequencing
    • 1:CAS:528:DC%2BC3sXhsFeltbzN 23603797
    • Yu SCY, Lee SWY, Jiang P, Leung TY, Chan KCA, Chiu RWK, et al. High-resolution profiling of fetal DNA clearance from maternal plasma by massively parallel sequencing. Clin Chem. 2013;59(8):1228-37.
    • (2013) Clin Chem , vol.59 , Issue.8 , pp. 1228-1237
    • Yu, S.C.Y.1    Lee, S.W.Y.2    Jiang, P.3    Leung, T.Y.4    Chan, K.C.A.5    Chiu, R.W.K.6
  • 11
    • 0019403324 scopus 로고
    • DNA in synovial fluid and the circulation of patients with arthritis
    • 1:STN:280:DyaL38%2FmvVKhtg%3D%3D 7306236
    • Leon SA, Revach M, Ehrlich GE, Adler R, Petersen V, Shapiro B. DNA in synovial fluid and the circulation of patients with arthritis. Arthritis Rheum. 1981;24(9):1142-50.
    • (1981) Arthritis Rheum , vol.24 , Issue.9 , pp. 1142-1150
    • Leon, S.A.1    Revach, M.2    Ehrlich, G.E.3    Adler, R.4    Petersen, V.5    Shapiro, B.6
  • 12
    • 84866558696 scopus 로고    scopus 로고
    • Pleural fluid cell-free DNA integrity index to identify cytologically negative malignant pleural effusions including mesotheliomas
    • 1:CAS:528:DC%2BC3sXitVWqug%3D%3D 3495778 23009708
    • Sriram KB, Relan V, Clarke BE, Duhig EE, Windsor MN, Matar KS, et al. Pleural fluid cell-free DNA integrity index to identify cytologically negative malignant pleural effusions including mesotheliomas. BMC Cancer. 2012;12:428.
    • (2012) BMC Cancer , vol.12 , pp. 428
    • Sriram, K.B.1    Relan, V.2    Clarke, B.E.3    Duhig, E.E.4    Windsor, M.N.5    Matar, K.S.6
  • 14
    • 23044431709 scopus 로고    scopus 로고
    • Cell-free DNA in serum and plasma: Comparison of ELISA and quantitative PCR
    • 1:CAS:528:DC%2BD2MXmvV2gsbc%3D 16040855
    • Holdenrieder S, Stieber P, Chan LYS, Geiger S, Kremer A, Nagel D, et al. Cell-free DNA in serum and plasma: comparison of ELISA and quantitative PCR. Clin Chem. 2005;51(8):1544-6.
    • (2005) Clin Chem , vol.51 , Issue.8 , pp. 1544-1546
    • Holdenrieder, S.1    Stieber, P.2    Chan, L.Y.S.3    Geiger, S.4    Kremer, A.5    Nagel, D.6
  • 15
    • 79954993712 scopus 로고    scopus 로고
    • Origin, translocation and destination of extracellular occurring DNA-A new paradigm in genetic behaviour
    • 1:CAS:528:DC%2BC3MXltFyjsL8%3D 21277292
    • Peters DL, Pretorius PJ. Origin, translocation and destination of extracellular occurring DNA-a new paradigm in genetic behaviour. Clin Chim Acta. 2011;412(11-12):806-11.
    • (2011) Clin Chim Acta , vol.412 , Issue.11-12 , pp. 806-811
    • Peters, D.L.1    Pretorius, P.J.2
  • 16
    • 84863230684 scopus 로고    scopus 로고
    • Nonhematopoietically derived DNA is shorter than hematopoietically derived DNA in plasma: A transplantation model
    • 1:CAS:528:DC%2BC38Xjs1Kltbo%3D 22052939
    • Zheng YWL, Chan KCA, Sun H, Jiang P, Su X, Chen EZ, et al. Nonhematopoietically derived DNA is shorter than hematopoietically derived DNA in plasma: a transplantation model. Clin Chem. 2012;58(3):549-58.
    • (2012) Clin Chem , vol.58 , Issue.3 , pp. 549-558
    • Zheng, Y.W.L.1    Chan, K.C.A.2    Sun, H.3    Jiang, P.4    Su, X.5    Chen, E.Z.6
  • 17
    • 84903776814 scopus 로고    scopus 로고
    • Circulating cell-free DNA enables noninvasive diagnosis of heart transplant rejection
    • De Vlaminck I, Valantine HA, Snyder TM, Strehl C, Cohen G, Luikart H, et al. Circulating cell-free DNA enables noninvasive diagnosis of heart transplant rejection. Sci Transl Med. 2014;6(241):241ra277.
    • (2014) Sci Transl Med , vol.6 , Issue.241 , pp. 241ra277
    • De Vlaminck, I.1    Valantine, H.A.2    Snyder, T.M.3    Strehl, C.4    Cohen, G.5    Luikart, H.6
  • 18
    • 84872020299 scopus 로고    scopus 로고
    • Cancer genome scanning in plasma: Detection of tumor-associated copy number aberrations, single-nucleotide variants, and tumoral heterogeneity by massively parallel sequencing
    • 1:CAS:528:DC%2BC3sXpsVyntw%3D%3D 23065472
    • Chan KCA, Jiang P, Zheng YWL, Liao GJW, Sun H, Wong J, et al. Cancer genome scanning in plasma: detection of tumor-associated copy number aberrations, single-nucleotide variants, and tumoral heterogeneity by massively parallel sequencing. Clin Chem. 2013;59(1):211-24.
    • (2013) Clin Chem , vol.59 , Issue.1 , pp. 211-224
    • Chan, K.C.A.1    Jiang, P.2    Zheng, Y.W.L.3    Liao, G.J.W.4    Sun, H.5    Wong, J.6
  • 19
    • 84875520648 scopus 로고    scopus 로고
    • Analysis of circulating tumor DNA to monitor metastatic breast cancer
    • 1:CAS:528:DC%2BC3sXlt1SqsrY%3D 23484797
    • Dawson S-J, Tsui DWY, Murtaza M, Biggs H, Rueda OM, Chin S-F, et al. Analysis of circulating tumor DNA to monitor metastatic breast cancer. N Engl J Med. 2013;368(13):1199-209.
    • (2013) N Engl J Med , vol.368 , Issue.13 , pp. 1199-1209
    • Dawson, S.-J.1    Tsui, D.W.Y.2    Murtaza, M.3    Biggs, H.4    Rueda, O.M.5    Chin, S.-F.6
  • 20
    • 84889676353 scopus 로고    scopus 로고
    • Cell-free nucleic acids as biomarkers in dialyzed patients
    • 24249213
    • Korabecna M, Pazourkova E, Horinek A, Rocinova K, Tesar V. Cell-free nucleic acids as biomarkers in dialyzed patients. JN. 2013;26(6):1001-8.
    • (2013) JN , vol.26 , Issue.6 , pp. 1001-1008
    • Korabecna, M.1    Pazourkova, E.2    Horinek, A.3    Rocinova, K.4    Tesar, V.5
  • 21
    • 34548331348 scopus 로고    scopus 로고
    • Increased concentrations of antibody-bound circulatory cell-free DNA in rheumatoid arthritis
    • 1:CAS:528:DC%2BD2sXhtVSgu7fP 17712000
    • Zhong X-Y, von Mühlenen I, Li Y, Kang A, Gupta AK, Tyndall A, et al. Increased concentrations of antibody-bound circulatory cell-free DNA in rheumatoid arthritis. Clin Chem. 2007;53(9):1609-14.
    • (2007) Clin Chem , vol.53 , Issue.9 , pp. 1609-1614
    • Zhong, X.-Y.1    Von Mühlenen, I.2    Li, Y.3    Kang, A.4    Gupta, A.K.5    Tyndall, A.6
  • 22
    • 84874616358 scopus 로고    scopus 로고
    • High-throughput massively parallel sequencing for fetal aneuploidy detection from maternal plasma
    • 1:CAS:528:DC%2BC3sXktlSqt7w%3D 3590217 23483908
    • Jensen TJ, Zwiefelhofer T, Tim RC, Dzakula Z, Kim SK, Mazloom AR, et al. High-throughput massively parallel sequencing for fetal aneuploidy detection from maternal plasma. PLoS OnE. 2013;8(3):e57381.
    • (2013) PLoS OnE , vol.8 , Issue.3 , pp. 57381
    • Jensen, T.J.1    Zwiefelhofer, T.2    Tim, R.C.3    Dzakula, Z.4    Kim, S.K.5    Mazloom, A.R.6
  • 23
    • 84870688045 scopus 로고    scopus 로고
    • Clinical application of massively parallel sequencing-based prenatal noninvasive fetal trisomy test for trisomies 21 and 18 in 11 105 pregnancies with mixed risk factors
    • 23138752
    • Dan S, Wang W, Ren J, Li Y, Hu H, Xu Z, et al. Clinical application of massively parallel sequencing-based prenatal noninvasive fetal trisomy test for trisomies 21 and 18 in 11 105 pregnancies with mixed risk factors. Prenat Diagn. 2012;32(13):1225-32.
    • (2012) Prenat Diagn , vol.32 , Issue.13 , pp. 1225-1232
    • Dan, S.1    Wang, W.2    Ren, J.3    Li, Y.4    Hu, H.5    Xu, Z.6
  • 24
    • 64149125626 scopus 로고    scopus 로고
    • Profile of the circulating DNA in apparently healthy individuals
    • 1:CAS:528:DC%2BD1MXktVWqsLY%3D 19181738
    • Beck J, Urnovitz HB, Riggert J, Clerici M, Schütz E. Profile of the circulating DNA in apparently healthy individuals. Clin Chem. 2009;55(4):730-8.
    • (2009) Clin Chem , vol.55 , Issue.4 , pp. 730-738
    • Beck, J.1    Urnovitz, H.B.2    Riggert, J.3    Clerici, M.4    Schütz, E.5
  • 25
    • 84861437790 scopus 로고    scopus 로고
    • A comparative study of cell-free apoptotic and genomic DNA using FISH and massive parallel sequencing
    • 1:CAS:528:DC%2BC38Xns1Smu7Y%3D 22506740
    • Morozkin ES, Loseva EM, Morozov IV, Kurilshikov AM, Bondar AA, Rykova EY, et al. A comparative study of cell-free apoptotic and genomic DNA using FISH and massive parallel sequencing. Expert Opin Biol Ther. 2012;12 Suppl 1:S11-7.
    • (2012) Expert Opin Biol Ther , vol.12 , pp. 11-17
    • Morozkin, E.S.1    Loseva, E.M.2    Morozov, I.V.3    Kurilshikov, A.M.4    Bondar, A.A.5    Rykova, E.Y.6
  • 26
    • 0034750966 scopus 로고    scopus 로고
    • Alu repeat sequences are present in increased proportions compared to a unique gene in plasma/serum DNA: Evidence for a preferential release from viable cells?
    • 1:CAS:528:DC%2BD3MXotl2htr0%3D 11708488
    • Stroun M, Lyautey J, Lederrey C, Mulcahy HE, Anker P. Alu repeat sequences are present in increased proportions compared to a unique gene in plasma/serum DNA: evidence for a preferential release from viable cells? Ann N Y Acad Sci. 2001;945:258-64.
    • (2001) Ann N y Acad Sci , vol.945 , pp. 258-264
    • Stroun, M.1    Lyautey, J.2    Lederrey, C.3    Mulcahy, H.E.4    Anker, P.5
  • 27
    • 52249097227 scopus 로고    scopus 로고
    • A method for characterization of total circulating DNA
    • 1:CAS:528:DC%2BD1cXhtF2qur3P 18837930
    • van der Vaart M, Pretorius PJ. A method for characterization of total circulating DNA. Ann N Y Acad Sci. 2008;1137:92-7.
    • (2008) Ann N y Acad Sci , vol.1137 , pp. 92-97
    • Van Der Vaart, M.1    Pretorius, P.J.2
  • 28
    • 77955232951 scopus 로고    scopus 로고
    • Analysis of the size distributions of fetal and maternal cell-free DNA by paired-end sequencing
    • 1:CAS:528:DC%2BC3cXhtVahsb7P 20558635
    • Fan HC, Blumenfeld YJ, Chitkara U, Hudgins L, Quake SR. Analysis of the size distributions of fetal and maternal cell-free DNA by paired-end sequencing. Clin Chem. 2010;56(8):1279-86.
    • (2010) Clin Chem , vol.56 , Issue.8 , pp. 1279-1286
    • Fan, H.C.1    Blumenfeld, Y.J.2    Chitkara, U.3    Hudgins, L.4    Quake, S.R.5
  • 29
    • 0347898005 scopus 로고    scopus 로고
    • Quantitative analysis of fetal DNA in maternal plasma and serum: Implications for noninvasive prenatal diagnosis
    • 1:CAS:528:DyaK1cXlvVaiurc%3D 1377040 9529358
    • Lo YMD, Tein MS, Lau TK, Haines CJ, Leung TN, Poon PM, et al. Quantitative analysis of fetal DNA in maternal plasma and serum: implications for noninvasive prenatal diagnosis. Am J Hum Genet. 1998;62(4):768-75.
    • (1998) Am J Hum Genet , vol.62 , Issue.4 , pp. 768-775
    • Lo, Y.M.D.1    Tein, M.S.2    Lau, T.K.3    Haines, C.J.4    Leung, T.N.5    Poon, P.M.6
  • 30
    • 78751683468 scopus 로고    scopus 로고
    • Non-invasive prenatal assessment of trisomy 21 by multiplexed maternal plasma DNA sequencing: Large scale validity study
    • Chiu RWK, Akolekar R, Zheng YWL, Leung TY, Sun H, Chan KCA, et al. Non-invasive prenatal assessment of trisomy 21 by multiplexed maternal plasma DNA sequencing: large scale validity study. BMJ. 2011;342(7790):217.
    • (2011) BMJ , vol.342 , Issue.7790 , pp. 217
    • Chiu, R.W.K.1    Akolekar, R.2    Zheng, Y.W.L.3    Leung, T.Y.4    Sun, H.5    Chan, K.C.A.6
  • 31
    • 54049132561 scopus 로고    scopus 로고
    • Microfluidics digital PCR reveals a higher than expected fraction of fetal DNA in maternal plasma
    • 1:CAS:528:DC%2BD1cXht1CiurfK 18703764
    • Lun FMF, Chiu RWK, Allen Chan KC, Yeung Leung T, Kin Lau T, Dennis Lo YM. Microfluidics digital PCR reveals a higher than expected fraction of fetal DNA in maternal plasma. Clin Chem. 2008;54(10):1664-72.
    • (2008) Clin Chem , vol.54 , Issue.10 , pp. 1664-1672
    • Lun, F.M.F.1    Chiu, R.W.K.2    Allen Chan, K.C.3    Yeung Leung, T.4    Kin Lau, T.5    Dennis Lo, Y.M.6
  • 32
    • 84880043573 scopus 로고    scopus 로고
    • Gestational age and maternal weight effects on fetal cell-free DNA in maternal plasma
    • 1:CAS:528:DC%2BC3sXhtVKrs73M 23553731
    • Wang E, Batey A, Struble C, Musci T, Song K, Oliphant A. Gestational age and maternal weight effects on fetal cell-free DNA in maternal plasma. Prenatal Diagnosis. 2013;33(7):662-6.
    • (2013) Prenatal Diagnosis , vol.33 , Issue.7 , pp. 662-666
    • Wang, E.1    Batey, A.2    Struble, C.3    Musci, T.4    Song, K.5    Oliphant, A.6
  • 33
    • 84891792588 scopus 로고    scopus 로고
    • Circulating fetal cell-free DNA fractions differ in autosomal aneuploidies and monosomy x
    • 1:CAS:528:DC%2BC2cXpsleqsA%3D%3D 24046201
    • Rava RP, Srinivasan A, Sehnert AJ, Bianchi DW. Circulating fetal cell-free DNA fractions differ in autosomal aneuploidies and monosomy x. Clin Chem. 2014;60(1):243-50.
    • (2014) Clin Chem , vol.60 , Issue.1 , pp. 243-250
    • Rava, R.P.1    Srinivasan, A.2    Sehnert, A.J.3    Bianchi, D.W.4
  • 34
    • 84862492435 scopus 로고    scopus 로고
    • Fetal fraction in maternal plasma cell-free DNA at 11-13 weeks' gestation: Effect of maternal and fetal factors
    • Ashoor G, Poon L, Syngelaki A, Mosimann B, Nicolaides KH. Fetal fraction in maternal plasma cell-free DNA at 11-13 weeks' gestation: effect of maternal and fetal factors. Fetal Diag Ther. 2012;31(4):237-43.
    • (2012) Fetal Diag Ther , vol.31 , Issue.4 , pp. 237-243
    • Ashoor, G.1    Poon, L.2    Syngelaki, A.3    Mosimann, B.4    Nicolaides, K.H.5
  • 35
    • 84871536941 scopus 로고    scopus 로고
    • Fetal fraction in maternal plasma cell-free DNA at 11-13 weeks' gestation: Relation to maternal and fetal characteristics
    • Ashoor G, Syngelaki A, Poon LCY, Rezende JC, Nicolaides KH. Fetal fraction in maternal plasma cell-free DNA at 11-13 weeks' gestation: relation to maternal and fetal characteristics. Ultrasound in Obstet Gynecol. 2012;41(1):26-32.
    • (2012) Ultrasound in Obstet Gynecol , vol.41 , Issue.1 , pp. 26-32
    • Ashoor, G.1    Syngelaki, A.2    Poon, L.C.Y.3    Rezende, J.C.4    Nicolaides, K.H.5
  • 36
    • 0042827519 scopus 로고    scopus 로고
    • Evaluation of bidirectional transfer of plasma DNA through placenta
    • 1:CAS:528:DC%2BD3sXmsV2jtLc%3D 12884005
    • Sekizawa A, Yokokawa K, Sugito Y, Iwasaki M, Yukimoto Y, Ichizuka K, et al. Evaluation of bidirectional transfer of plasma DNA through placenta. Hum Genet. 2003;113(4):307-10.
    • (2003) Hum Genet , vol.113 , Issue.4 , pp. 307-310
    • Sekizawa, A.1    Yokokawa, K.2    Sugito, Y.3    Iwasaki, M.4    Yukimoto, Y.5    Ichizuka, K.6
  • 37
    • 34347230507 scopus 로고    scopus 로고
    • Free fetal DNA in maternal plasma in anembryonic pregnancies: Confirmation that the origin is the trophoblast
    • 1:CAS:528:DC%2BD2sXms1Kqs7s%3D 17286310
    • Alberry M, Maddocks D, Jones M, Abdel Hadi M, Abdel-Fattah S, Avent N, et al. Free fetal DNA in maternal plasma in anembryonic pregnancies: Confirmation that the origin is the trophoblast. Prenat Diagn. 2007;27(5):415-8.
    • (2007) Prenat Diagn , vol.27 , Issue.5 , pp. 415-418
    • Alberry, M.1    Maddocks, D.2    Jones, M.3    Abdel Hadi, M.4    Abdel-Fattah, S.5    Avent, N.6
  • 38
    • 33746643333 scopus 로고    scopus 로고
    • Trophoblastic Oxidative Stress and the Release of Cell-Free Feto-Placental DNA
    • 1:CAS:528:DC%2BD28XosFalurg%3D 1698796 16877342
    • Tjoa ML, Cindrova-Davies T, Spasic-Boskovic O, Bianchi DW, Burton GJ. Trophoblastic Oxidative Stress and the Release of Cell-Free Feto-Placental DNA. Am J Pathol. 2006;169(2):400-4.
    • (2006) Am J Pathol , vol.169 , Issue.2 , pp. 400-404
    • Tjoa, M.L.1    Cindrova-Davies, T.2    Spasic-Boskovic, O.3    Bianchi, D.W.4    Burton, G.J.5
  • 39
    • 23844476733 scopus 로고    scopus 로고
    • Placental volume, as measured by 3-dimensional sonography and levels of maternal plasma cell-free fetal DNA
    • 1:CAS:528:DC%2BD2MXns1Wms7k%3D 16098876
    • Wataganara T, Metzenbauer M, Peter I, Johnson KL, Bianchi DW. Placental volume, as measured by 3-dimensional sonography and levels of maternal plasma cell-free fetal DNA. Am J Obstet Gynecol. 2005;193(2):496-500.
    • (2005) Am J Obstet Gynecol , vol.193 , Issue.2 , pp. 496-500
    • Wataganara, T.1    Metzenbauer, M.2    Peter, I.3    Johnson, K.L.4    Bianchi, D.W.5
  • 40
    • 34247576750 scopus 로고    scopus 로고
    • Feasibility study of using fetal DNA in maternal plasma for non-invasive prenatal diagnosis
    • 1:CAS:528:DC%2BD2sXotFyksr4%3D 17464580
    • Liu FM, Wang XY, Feng X, Wang W, Ye YX, Chen H. Feasibility study of using fetal DNA in maternal plasma for non-invasive prenatal diagnosis. Acta Obstet Gynecol Scand. 2007;86(5):535-41.
    • (2007) Acta Obstet Gynecol Scand , vol.86 , Issue.5 , pp. 535-541
    • Liu, F.M.1    Wang, X.Y.2    Feng, X.3    Wang, W.4    Ye, Y.X.5    Chen, H.6
  • 41
    • 3242665042 scopus 로고    scopus 로고
    • Rapid clearance of fetal cells from maternal circulation after delivery
    • 15251948
    • Kolialexi A, Tsangaris GTH, Antsaklis A, Mavrou A. Rapid clearance of fetal cells from maternal circulation after delivery. Ann N Y Acad Sci. 2004;1022:113-8.
    • (2004) Ann N y Acad Sci , vol.1022 , pp. 113-118
    • Kolialexi, A.1    Tsangaris, G.T.H.2    Antsaklis, A.3    Mavrou, A.4
  • 43
    • 84868198427 scopus 로고    scopus 로고
    • Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia
    • 1:CAS:528:DC%2BC38XhsV2rsLfI 23064414
    • Kulis M, Heath S, Bibikova M, Queiros AC, Navarro A, Clot G, et al. Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia. Nat Genet. 2012;44(11):1236-42.
    • (2012) Nat Genet , vol.44 , Issue.11 , pp. 1236-1242
    • Kulis, M.1    Heath, S.2    Bibikova, M.3    Queiros, A.C.4    Navarro, A.5    Clot, G.6
  • 44
    • 70450217879 scopus 로고    scopus 로고
    • Human DNA methylomes at base resolution show widespread epigenomic differences
    • 1:CAS:528:DC%2BD1MXht1Kiu73E 2857523 19829295
    • Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, Tonti-Filippini J, et al. Human DNA methylomes at base resolution show widespread epigenomic differences. Nature. 2009;462(7271):315-22.
    • (2009) Nature , vol.462 , Issue.7271 , pp. 315-322
    • Lister, R.1    Pelizzola, M.2    Dowen, R.H.3    Hawkins, R.D.4    Hon, G.5    Tonti-Filippini, J.6
  • 45
    • 84903304809 scopus 로고    scopus 로고
    • Methy-pipe: An integrated bioinformatics pipeline for whole genome bisulfite sequencing data analysis
    • 4063866 24945300
    • Jiang P, Sun K, Lun FMF, Guo AM, Wang H, Chan KCA, et al. Methy-pipe: an integrated bioinformatics pipeline for whole genome bisulfite sequencing data analysis. PLoS One. 2014;9(6):e100360.
    • (2014) PLoS One , vol.9 , Issue.6 , pp. 100360
    • Jiang, P.1    Sun, K.2    Lun, F.M.F.3    Guo, A.M.4    Wang, H.5    Chan, K.C.A.6
  • 46
    • 84887080693 scopus 로고    scopus 로고
    • Noninvasive prenatal methylomic analysis by genomewide bisulfite sequencing of maternal plasma DNA
    • 1:CAS:528:DC%2BC3sXhslGht7vO 23857673
    • Lun FMF, Chiu RWK, Sun K, Leung TY, Jiang P, Chan KCA, et al. Noninvasive prenatal methylomic analysis by genomewide bisulfite sequencing of maternal plasma DNA. Clin Chem. 2013;59(11):1583-94.
    • (2013) Clin Chem , vol.59 , Issue.11 , pp. 1583-1594
    • Lun, F.M.F.1    Chiu, R.W.K.2    Sun, K.3    Leung, T.Y.4    Jiang, P.5    Chan, K.C.A.6
  • 47
    • 79952768967 scopus 로고    scopus 로고
    • Gestation-dependent changes in human placental global DNA methylation levels
    • 1:CAS:528:DC%2BC3MXjsVKmsLw%3D 21425205
    • Chavan-Gautam P, Sundrani D, Pisal H, Nimbargi V, Mehendale S, Joshi S. Gestation-dependent changes in human placental global DNA methylation levels. Mol Reprod Dev. 2011;78(3):150.
    • (2011) Mol Reprod Dev , vol.78 , Issue.3 , pp. 150
    • Chavan-Gautam, P.1    Sundrani, D.2    Pisal, H.3    Nimbargi, V.4    Mehendale, S.5    Joshi, S.6
  • 48
    • 84935828551 scopus 로고    scopus 로고
    • Whole genome bisulfite sequencing of cell-free DNA and its cellular contributors uncovers placenta hypomethylated domains
    • 4427941 25886572
    • Jensen TJ, Kim SK, Zhu Z, Chin C, Gebhard C, Lu T, et al. Whole genome bisulfite sequencing of cell-free DNA and its cellular contributors uncovers placenta hypomethylated domains. Genome Biol. 2015;16(1):78.
    • (2015) Genome Biol , vol.16 , Issue.1 , pp. 78
    • Jensen, T.J.1    Kim, S.K.2    Zhu, Z.3    Chin, C.4    Gebhard, C.5    Lu, T.6
  • 50
    • 84900393980 scopus 로고    scopus 로고
    • Investigating and correcting plasma DNA sequencing coverage bias to enhance aneuploidy discovery
    • 3906086 24489824
    • Chandrananda D, Thorne NP, Ganesamoorthy D, Bruno DL, Benjamini Y, Speed TP, et al. Investigating and correcting plasma DNA sequencing coverage bias to enhance aneuploidy discovery. PLoS One. 2014;9(1):e86993.
    • (2014) PLoS One , vol.9 , Issue.1 , pp. 86993
    • Chandrananda, D.1    Thorne, N.P.2    Ganesamoorthy, D.3    Bruno, D.L.4    Benjamini, Y.5    Speed, T.P.6
  • 51
    • 34748848639 scopus 로고    scopus 로고
    • The NCBI dbGaP database of genotypes and phenotypes
    • 1:CAS:528:DC%2BD2sXhtV2isLzJ 2031016 17898773
    • Mailman MD, Feolo M, Jin Y, Kimura M, Tryka K, Bagoutdinov R, et al. The NCBI dbGaP database of genotypes and phenotypes. Nat Genet. 2007;39(10):1181-6.
    • (2007) Nat Genet , vol.39 , Issue.10 , pp. 1181-1186
    • Mailman, M.D.1    Feolo, M.2    Jin, Y.3    Kimura, M.4    Tryka, K.5    Bagoutdinov, R.6
  • 54
    • 84887130151 scopus 로고    scopus 로고
    • Picard Tools. http://broadinstitute.github.io/picard.
    • Picard Tools
  • 55
    • 77956295988 scopus 로고    scopus 로고
    • The genome analysis toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • 1:CAS:528:DC%2BC3cXhtFeru7jM 2928508 20644199
    • McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, et al. The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 2010;20(9):1297-303.
    • (2010) Genome Res , vol.20 , Issue.9 , pp. 1297-1303
    • McKenna, A.1    Hanna, M.2    Banks, E.3    Sivachenko, A.4    Cibulskis, K.5    Kernytsky, A.6
  • 58
    • 84865777819 scopus 로고    scopus 로고
    • ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
    • 1:CAS:528:DC%2BC38XhtlentLvJ 3431496 22955991
    • Landt SG, Marinov GK, Kundaje A, Kheradpour P, Pauli F, Batzoglou S, et al. ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Res. 2012;22(9):1813-31.
    • (2012) Genome Res , vol.22 , Issue.9 , pp. 1813-1831
    • Landt, S.G.1    Marinov, G.K.2    Kundaje, A.3    Kheradpour, P.4    Pauli, F.5    Batzoglou, S.6
  • 59
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • ENCODE Project Consortium
    • ENCODE Project Consortium, Bernstein BE, Birney E, Dunham I, Green ED, Gunter C, et al. An integrated encyclopedia of DNA elements in the human genome. Nature. 2012;489(7414):57-74.
    • (2012) Nature , vol.489 , Issue.7414 , pp. 57-74
    • Bernstein, B.E.1    Birney, E.2    Dunham, I.3    Green, E.D.4    Gunter, C.5
  • 61
    • 0036177799 scopus 로고    scopus 로고
    • Predominant hematopoietic origin of cell-free DNA in plasma and serum after sex-mismatched bone marrow transplantation
    • 1:CAS:528:DC%2BD38XitVeku7s%3D 11861434
    • Lui YYN, Chik K-W, Chiu RWK, Ho C-Y, Lam CWK, Lo YMD. Predominant hematopoietic origin of cell-free DNA in plasma and serum after sex-mismatched bone marrow transplantation. Clin Chem. 2002;48(3):421-7.
    • (2002) Clin Chem , vol.48 , Issue.3 , pp. 421-427
    • Lui, Y.Y.N.1    Chik, K.-W.2    Chiu, R.W.K.3    Ho, C.-Y.4    Lam, C.W.K.5    Lo, Y.M.D.6
  • 64
    • 79958090979 scopus 로고    scopus 로고
    • DREME: Motif discovery in transcription factor ChIP-seq data
    • 1:CAS:528:DC%2BC3MXntFGkurg%3D 3106199 21543442
    • Bailey TL. DREME: motif discovery in transcription factor ChIP-seq data. Bioinformatics. 2011;27(12):1653-9.
    • (2011) Bioinformatics , vol.27 , Issue.12 , pp. 1653-1659
    • Bailey, T.L.1
  • 65
    • 80052833627 scopus 로고    scopus 로고
    • Reducing the exome search space for Mendelian diseases using genetic linkage analysis of exome genotypes
    • 3308048 21917141
    • Smith KR, Bromhead CJ, Hildebrand MS, Shearer AE, Lockhart PJ, Najmabadi H, et al. Reducing the exome search space for Mendelian diseases using genetic linkage analysis of exome genotypes. Genome Biol. 2011;12(9):R85.
    • (2011) Genome Biol , vol.12 , Issue.9 , pp. 85
    • Smith, K.R.1    Bromhead, C.J.2    Hildebrand, M.S.3    Shearer, A.E.4    Lockhart, P.J.5    Najmabadi, H.6
  • 67
    • 79959557189 scopus 로고    scopus 로고
    • Determinants of nucleosome organization in primary human cells
    • 1:CAS:528:DC%2BC3MXmsFyqt7k%3D 3212987 21602827
    • Valouev A, Johnson SM, Boyd SD, Smith CL, Fire AZ, Sidow A. Determinants of nucleosome organization in primary human cells. Nature. 2011;474(7352):516-20.
    • (2011) Nature , vol.474 , Issue.7352 , pp. 516-520
    • Valouev, A.1    Johnson, S.M.2    Boyd, S.D.3    Smith, C.L.4    Fire, A.Z.5    Sidow, A.6
  • 68
    • 67349261087 scopus 로고    scopus 로고
    • High-resolution mapping of sequence-directed nucleosome positioning on genomic DNA
    • 1:CAS:528:DC%2BD1MXnt1Kisbc%3D 19427325
    • Fraser RM, Keszenman-Pereyra D, Simmen MW, Allan J. High-resolution mapping of sequence-directed nucleosome positioning on genomic DNA. J Mol Biol. 2009;390(2):292-305.
    • (2009) J Mol Biol , vol.390 , Issue.2 , pp. 292-305
    • Fraser, R.M.1    Keszenman-Pereyra, D.2    Simmen, M.W.3    Allan, J.4
  • 69
    • 0037372688 scopus 로고    scopus 로고
    • Origin of plasma cell-free DNA after solid organ transplantation
    • 1:CAS:528:DC%2BD3sXhvFSktro%3D 12600963
    • Lui YYN, Woo K-S, Wang AYM, Yeung C-K, Li PKT, Chau E, et al. Origin of plasma cell-free DNA after solid organ transplantation. Clin Chem. 2003;49(3):495-6.
    • (2003) Clin Chem , vol.49 , Issue.3 , pp. 495-496
    • Lui, Y.Y.N.1    Woo, K.-S.2    Wang, A.Y.M.3    Yeung, C.-K.4    Li, P.K.T.5    Chau, E.6
  • 70
    • 84861548193 scopus 로고    scopus 로고
    • Summarizing and correcting the GC content bias in high-throughput sequencing
    • 1:CAS:528:DC%2BC38XnsF2ksr4%3D 3378858 22323520
    • Benjamini Y, Speed TP. Summarizing and correcting the GC content bias in high-throughput sequencing. Nucleic Acids Res. 2012;40(10):e72.
    • (2012) Nucleic Acids Res , vol.40 , Issue.10 , pp. 72
    • Benjamini, Y.1    Speed, T.P.2
  • 71
    • 84917709441 scopus 로고    scopus 로고
    • Plasma DNA aberrations in systemic lupus erythematosus revealed by genomic and methylomic sequencing
    • 1:CAS:528:DC%2BC2cXhvF2jtr3E 4267379 25427797
    • Chan RWY, Jiang P, Peng X, Tam L-S, Liao GJW, Li EKM, et al. Plasma DNA aberrations in systemic lupus erythematosus revealed by genomic and methylomic sequencing. Proc Natl Acad Sci U S A. 2014;111(49):E5302-11.
    • (2014) Proc Natl Acad Sci U S A , vol.111 , Issue.49 , pp. 5302-5311
    • Chan, R.W.Y.1    Jiang, P.2    Peng, X.3    Tam, L.-S.4    Liao, G.J.W.5    Li, E.K.M.6


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