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Volumn 468, Issue 1, 2015, Pages 65-72

A novel chemical footprinting approach identifies critical lysine residues involved in the binding of receptor-associated protein to cluster II of LDL receptor-related protein

Author keywords

Footprinting; Ligand binding; Low density lipoprotein (LDL) receptor related protein; Mass spectrometry; Receptor associated protein; Tandem mass tag

Indexed keywords

LOW DENSITY LIPOPROTEIN RECEPTOR RELATED PROTEIN; LYSINE; MEMBRANE PROTEIN; RECEPTOR ASSOCIATED PROTEIN; UNCLASSIFIED DRUG; LOW DENSITY LIPOPROTEIN RECEPTOR RELATED PROTEIN ASSOCIATED PROTEIN; PROTEIN BINDING; RECOMBINANT PROTEIN;

EID: 84934996537     PISSN: 02646021     EISSN: 14708728     Source Type: Journal    
DOI: 10.1042/BJ20140977     Document Type: Article
Times cited : (10)

References (31)
  • 1
    • 34548418142 scopus 로고    scopus 로고
    • Methods for the detection and analysis of protein-protein interactions
    • CrossRef PubMed
    • Berggard, T., Linse, S. and James, P. (2007) Methods for the detection and analysis of protein-protein interactions. Proteomics 7, 2833-2842 CrossRef PubMed
    • (2007) Proteomics , vol.7 , pp. 2833-2842
    • Berggard, T.1    Linse, S.2    James, P.3
  • 2
    • 84861145145 scopus 로고    scopus 로고
    • Mass spectrometry based tools to investigate protein-ligand interactions for drug discovery
    • CrossRef PubMed
    • Pacholarz, K.J., Garlish, R.A., Taylor, R.J. and Barran, P.E. (2012) Mass spectrometry based tools to investigate protein-ligand interactions for drug discovery. Chem. Soc. Rev. 41, 4335-4355 CrossRef PubMed
    • (2012) Chem. Soc. Rev. , vol.41 , pp. 4335-4355
    • Pacholarz, K.J.1    Garlish, R.A.2    Taylor, R.J.3    Barran, P.E.4
  • 3
    • 25144445202 scopus 로고    scopus 로고
    • Structural proteomics of macromolecular assemblies using oxidative footprinting and mass spectrometry
    • CrossRef PubMed
    • Guan, J-.Q. and Chance, M.R. (2005) Structural proteomics of macromolecular assemblies using oxidative footprinting and mass spectrometry. Trends Biochem. Sci. 30, 583-592 CrossRef PubMed
    • (2005) Trends Biochem. Sci. , vol.30 , pp. 583-592
    • Guan J.-., Q.1    Chance, M.R.2
  • 4
    • 64649085349 scopus 로고    scopus 로고
    • Mass spectrometry-based footprinting of protein-protein interactions
    • CrossRef PubMed
    • McKee, C.J., Kessl, J.J., Norris, J.O., Shkriabai, N. and Kvaratskhelia, M. (2009) Mass spectrometry-based footprinting of protein-protein interactions. Methods 47, 304-307 CrossRef PubMed
    • (2009) Methods , vol.47 , pp. 304-307
    • McKee, C.J.1    Kessl, J.J.2    Norris, J.O.3    Shkriabai, N.4    Kvaratskhelia, M.5
  • 5
    • 71049175228 scopus 로고    scopus 로고
    • Identification of heparin-binding sites in proteins by selective labeling
    • CrossRef PubMed
    • Ori, A., Free, P., Courty, J., Wilkinson, M.C. and Fernig, D.G. (2009) Identification of heparin-binding sites in proteins by selective labeling. Mol. Cell. Proteomics 8, 2256-2265 CrossRef PubMed
    • (2009) Mol. Cell. Proteomics , vol.8 , pp. 2256-2265
    • Ori, A.1    Free, P.2    Courty, J.3    Wilkinson, M.C.4    Fernig, D.G.5
  • 6
    • 84857287653 scopus 로고    scopus 로고
    • Mass spectrometry-assisted study reveals that lysine residues 1967 and 1968 have opposite contribution to stability of activated factor VIII
    • CrossRef PubMed
    • Bloem, E., Meems, H., van den Biggelaar, M., van der Zwaan, C., Mertens, K. and Meijer, A.B. (2012) Mass spectrometry-assisted study reveals that lysine residues 1967 and 1968 have opposite contribution to stability of activated factor VIII. J. Biol. Chem. 287, 5775-5783 CrossRef PubMed
    • (2012) J. Biol. Chem. , vol.287 , pp. 5775-5783
    • Bloem, E.1    Meems, H.2    Van Den Biggelaar, M.3    Van Der Zwaan, C.4    Mertens, K.5    Meijer, A.B.6
  • 7
    • 84872088575 scopus 로고    scopus 로고
    • Distinct roles of Ser-764 and Lys-773 at the N terminus of von Willebrand factor in complex assembly with coagulation factor VIII
    • CrossRef PubMed
    • Castro-Nunez, L., Bloem, E., Boon-Spijker, M.G., van der Zwaan, C., van den Biggelaar, M., Mertens, K. and Meijer, A.B. (2013) Distinct roles of Ser-764 and Lys-773 at the N terminus of von Willebrand factor in complex assembly with coagulation factor VIII. J. Biol. Chem. 288, 393-400 CrossRef PubMed
    • (2013) J. Biol. Chem. , vol.288 , pp. 393-400
    • Castro-Nunez, L.1    Bloem, E.2    Boon-Spijker, M.G.3    Van Der Zwaan, C.4    Van Den Biggelaar, M.5    Mertens, K.6    Meijer, A.B.7
  • 8
    • 84886895063 scopus 로고    scopus 로고
    • Covalent labeling with isotopically encoded reagents for faster structural analysis of proteins by mass spectrometry
    • CrossRef PubMed
    • Zhou, Y. and Vachet, R.W. (2013) Covalent labeling with isotopically encoded reagents for faster structural analysis of proteins by mass spectrometry. Anal. Chem. 85, 9664-9670 CrossRef PubMed
    • (2013) Anal. Chem. , vol.85 , pp. 9664-9670
    • Zhou, Y.1    Vachet, R.W.2
  • 9
    • 74849138649 scopus 로고    scopus 로고
    • Combining low- and high-energy tandem mass spectra for optimized peptide quantification with isobaric tags
    • CrossRef PubMed
    • Dayon, L., Pasquarello, C., Hoogland, C., Sanchez, J.C. and Scherl, A. (2010) Combining low- and high-energy tandem mass spectra for optimized peptide quantification with isobaric tags. J. Proteomics 73, 769-777 CrossRef PubMed
    • (2010) J. Proteomics , vol.73 , pp. 769-777
    • Dayon, L.1    Pasquarello, C.2    Hoogland, C.3    Sanchez, J.C.4    Scherl, A.5
  • 10
    • 33646046808 scopus 로고    scopus 로고
    • Structure of an LDLR-RAP complex reveals a general mode for ligand recognition by lipoprotein receptors
    • CrossRef PubMed
    • Fisher, C., Beglova, N. and Blacklow, S.C. (2006) Structure of an LDLR-RAP complex reveals a general mode for ligand recognition by lipoprotein receptors. Mol. Cell 22, 277-283 CrossRef PubMed
    • (2006) Mol. Cell , vol.22 , pp. 277-283
    • Fisher, C.1    Beglova, N.2    Blacklow, S.C.3
  • 11
    • 0038719718 scopus 로고    scopus 로고
    • Allosteric modulation of ligand binding to low density lipoprotein receptor-related protein by the receptor-associated protein requires critical lysine residues within its carboxyl-terminal domain
    • CrossRef PubMed
    • Migliorini, M.M., Behre, E.H., Brew, S., Ingham, K.C. and Strickland, D.K. (2003) Allosteric modulation of ligand binding to low density lipoprotein receptor-related protein by the receptor-associated protein requires critical lysine residues within its carboxyl-terminal domain. J. Biol. Chem. 278, 17986-17992 CrossRef PubMed
    • (2003) J. Biol. Chem. , vol.278 , pp. 17986-17992
    • Migliorini, M.M.1    Behre, E.H.2    Brew, S.3    Ingham, K.C.4    Strickland, D.K.5
  • 12
    • 79751538197 scopus 로고    scopus 로고
    • A single lysine of the two-lysine recognition motif of the D3 domain of receptor-associated protein is sufficient to mediate endocytosis by low-density lipoprotein receptor-related protein
    • CrossRef PubMed
    • van den Biggelaar, M., Sellink, E., Klein Gebbinck, J.W.T.M., Mertens, K. and Meijer, A.B. (2011) A single lysine of the two-lysine recognition motif of the D3 domain of receptor-associated protein is sufficient to mediate endocytosis by low-density lipoprotein receptor-related protein. Int. J. Biochem. Cell Biol. 43, 431-440 CrossRef PubMed
    • (2011) Int. J. Biochem. Cell Biol. , vol.43 , pp. 431-440
    • Van Den Biggelaar, M.1    Sellink, E.2    Klein Gebbinck, J.W.T.M.3    Mertens, K.4    Meijer, A.B.5
  • 14
    • 0034836428 scopus 로고    scopus 로고
    • LRP: A multifunctional scavenger and signaling receptor
    • CrossRef PubMed
    • Herz, J. and Strickland, D.K. (2001) LRP: a multifunctional scavenger and signaling receptor. J. Clin. Invest. 108, 779-784 CrossRef PubMed
    • (2001) J. Clin. Invest. , vol.108 , pp. 779-784
    • Herz, J.1    Strickland, D.K.2
  • 15
    • 0031662589 scopus 로고    scopus 로고
    • Receptor-associated protein (RAP): A specialized chaperone for endocytic receptors
    • PubMed
    • Willnow, T.E. (1998) Receptor-associated protein (RAP): a specialized chaperone for endocytic receptors. Biol. Chem. 379, 1025-1031 PubMed
    • (1998) Biol. Chem. , vol.379 , pp. 1025-1031
    • Willnow, T.E.1
  • 16
    • 0025786502 scopus 로고
    • 39-kDa protein modulates binding of ligands to low density lipoprotein receptor-related protein/alpha 2-macroglobulin receptor
    • PubMed
    • Herz, J., Goldstein, J.L., Strickland, D.K., Ho, Y.K. and Brown, M.S. (1991) 39-kDa protein modulates binding of ligands to low density lipoprotein receptor-related protein/alpha 2-macroglobulin receptor. J. Biol. Chem. 266, 21232-21238 PubMed
    • (1991) J. Biol. Chem. , vol.266 , pp. 21232-21238
    • Herz, J.1    Goldstein, J.L.2    Strickland, D.K.3    Ho, Y.K.4    Brown, M.S.5
  • 17
    • 33746939782 scopus 로고    scopus 로고
    • The switch on the RAPper's necklace
    • CrossRef PubMed
    • Herz, J. (2006) The switch on the RAPper's necklace. Mol. Cell 23, 451-455 CrossRef PubMed
    • (2006) Mol. Cell , vol.23 , pp. 451-455
    • Herz, J.1
  • 18
    • 0035909824 scopus 로고    scopus 로고
    • Dominant thermodynamic role of the third independent receptor binding site in the receptor-associated protein RAP
    • CrossRef PubMed
    • Andersen, O.M., Schwarz, F.P., Eisenstein, E., Jacobsen, C., Moestrup, S.K., Etzerodt, M. and Thøgersen, H.C. (2001) Dominant thermodynamic role of the third independent receptor binding site in the receptor-associated protein RAP. Biochemistry 40, 15408-15417 CrossRef PubMed
    • (2001) Biochemistry , vol.40 , pp. 15408-15417
    • Andersen, O.M.1    Schwarz, F.P.2    Eisenstein, E.3    Jacobsen, C.4    Moestrup, S.K.5    Etzerodt, M.6    Thøgersen, H.C.7
  • 19
    • 38949136371 scopus 로고    scopus 로고
    • Unfolding of the RAP-D3 helical bundle facilitates dissociation of RAP-receptor complexes
    • CrossRef PubMed
    • Estrada, K., Fisher, C. and Blacklow, S.C. (2008) Unfolding of the RAP-D3 helical bundle facilitates dissociation of RAP-receptor complexes. Biochemistry 47, 1532-1539 CrossRef PubMed
    • (2008) Biochemistry , vol.47 , pp. 1532-1539
    • Estrada, K.1    Fisher, C.2    Blacklow, S.C.3
  • 20
    • 67650917714 scopus 로고    scopus 로고
    • Receptor-associated protein (RAP) has two high-affinity binding sites for the low-density lipoprotein receptor-related protein (LRP): Consequences for the chaperone functions of RAP
    • CrossRef PubMed
    • Jensen, J.K., Dolmer, K. and Gettins, P.G.W. (2009) Receptor-associated protein (RAP) has two high-affinity binding sites for the low-density lipoprotein receptor-related protein (LRP): consequences for the chaperone functions of RAP. Biochem. J. 421, 273-282 CrossRef PubMed
    • (2009) Biochem. J. , vol.421 , pp. 273-282
    • Jensen, J.K.1    Dolmer, K.2    Gettins, P.G.W.3
  • 21
    • 50349092250 scopus 로고    scopus 로고
    • LDL receptor-related protein 1: Unique tissue-specific functions revealed by selective gene knockout studies
    • CrossRef PubMed
    • Lillis, A.P., Van Duyn, L.B., Murphy-Ullrich, J.E. and Strickland, D.K. (2008) LDL receptor-related protein 1: unique tissue-specific functions revealed by selective gene knockout studies. Physiol. Rev. 88, 887-918 CrossRef PubMed
    • (2008) Physiol. Rev. , vol.88 , pp. 887-918
    • Lillis, A.P.1    Van Duyn, L.B.2    Murphy-Ullrich, J.E.3    Strickland, D.K.4
  • 22
    • 0033941425 scopus 로고    scopus 로고
    • Apolipoprotein E-low density lipoprotein receptor interaction. Influences of basic residue and amphipathic alpha-helix organization in the ligand
    • PubMed
    • Zaiou, M., Arnold, K.S., Newhouse, Y.M., Innerarity, T.L., Weisgraber, K.H., Segall, M.L., Phillips, M.C. and Lund-Katz, S. (2000) Apolipoprotein E-low density lipoprotein receptor interaction. Influences of basic residue and amphipathic alpha-helix organization in the ligand. J. Lipid Res. 41, 1087-1095 PubMed
    • (2000) J. Lipid Res. , vol.41 , pp. 1087-1095
    • Zaiou, M.1    Arnold, K.S.2    Newhouse, Y.M.3    Innerarity, T.L.4    Weisgraber, K.H.5    Segall, M.L.6    Phillips, M.C.7    Lund-Katz, S.8
  • 23
    • 0037646492 scopus 로고    scopus 로고
    • Low density lipoprotein receptor-related protein and factor IXa share structural requirements for binding to the A3 domain of coagulation factor VIII
    • CrossRef PubMed
    • Bovenschen, N., Boertjes, R.C., van Stempvoort, G., Voorberg, J., Lenting, P.J., Meijer, A.B. and Mertens, K. (2003) Low density lipoprotein receptor-related protein and factor IXa share structural requirements for binding to the A3 domain of coagulation factor VIII. J. Biol. Chem. 278, 9370-9377 CrossRef PubMed
    • (2003) J. Biol. Chem. , vol.278 , pp. 9370-9377
    • Bovenschen, N.1    Boertjes, R.C.2    Van Stempvoort, G.3    Voorberg, J.4    Lenting, P.J.5    Meijer, A.B.6    Mertens, K.7
  • 24
    • 0021249145 scopus 로고
    • Characterization of 25 monoclonal antibodies to factor VIII-von Willebrand factor: Relationship between ristocetin-induced platelet aggregation and platelet adherence to subendothelium
    • PubMed
    • Stel, H.V., Sakariassen, K.S., Scholte, B.J., Veerman, E.C., van der Kwast, T.H., de Groot, P.G., Sixma, J.J. and van Mourik, J.A. (1984) Characterization of 25 monoclonal antibodies to factor VIII-von Willebrand factor: relationship between ristocetin-induced platelet aggregation and platelet adherence to subendothelium. Blood 63, 1408-1415 PubMed
    • (1984) Blood , vol.63 , pp. 1408-1415
    • Stel, H.V.1    Sakariassen, K.S.2    Scholte, B.J.3    Veerman, E.C.4    Van Der Kwast, T.H.5    De Groot, P.G.6    Sixma, J.J.7    Van Mourik, J.A.8
  • 25
    • 34249780798 scopus 로고    scopus 로고
    • Functional duplication of ligand-binding domains within low-density lipoprotein receptor-related protein for interaction with receptor associated protein, α 2-macroglobulin, factor IXa and factor VIII
    • CrossRef PubMed
    • Meijer, A.B., Rohlena, J., van der Zwaan, C., van Zonneveld, A., Boertjes, R.C., Lenting, P.J. and Mertens, K. (2007) Functional duplication of ligand-binding domains within low-density lipoprotein receptor-related protein for interaction with receptor associated protein, α 2-macroglobulin, factor IXa and factor VIII. Biochim. Biophys. Acta 1774, 714-722 CrossRef PubMed
    • (2007) Biochim. Biophys. Acta. , vol.1774 , pp. 714-722
    • Meijer, A.B.1    Rohlena, J.2    Van Der Zwaan, C.3    Van Zonneveld, A.4    Boertjes, R.C.5    Lenting, P.J.6    Mertens, K.7
  • 26
    • 79957975266 scopus 로고    scopus 로고
    • HLA-DR-presented peptide repertoires derived from human monocyte-derived dendritic cells pulsed with blood coagulation factor VIII
    • M110.002246 CrossRef PubMed
    • van Haren, S.D., Herczenik, E., ten Brinkem, A., Mertens, K., Voorberg, J. and Meijer, A.B. (2011) HLA-DR-presented peptide repertoires derived from human monocyte-derived dendritic cells pulsed with blood coagulation factor VIII. Mol. Cell. Proteomics 10, M110.002246 CrossRef PubMed
    • (2011) Mol. Cell. Proteomics , vol.10
    • Van Haren, S.D.1    Herczenik, E.2    Ten Brinkem, A.3    Mertens, K.4    Voorberg, J.5    Meijer, A.B.6
  • 27
    • 84860833500 scopus 로고    scopus 로고
    • Reorganizing the protein space at the Universal Protein Resource (UniProt)
    • CrossRef PubMed
    • UniProt Consortium (2012) Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic. Acids Res. 40, D71-D75 CrossRef PubMed
    • (2012) Nucleic. Acids Res. , vol.40 , pp. D71-D75
  • 29
    • 84882326084 scopus 로고    scopus 로고
    • Quantitative dissection of the binding contribution of ligand lysines of the receptor-associated protein (RAP) to the low density lipoprotein receptor-related protein (LRP1)
    • CrossRef PubMed
    • Dolmer, K., Campos, A. and Gettins, P.G.W. (2013) Quantitative dissection of the binding contribution of ligand lysines of the receptor-associated protein (RAP) to the low density lipoprotein receptor-related protein (LRP1). J. Biol. Chem. 288, 24081-24090 CrossRef PubMed
    • (2013) J. Biol. Chem. , vol.288 , pp. 24081-24090
    • Dolmer, K.1    Campos, A.2    Gettins, P.G.W.3
  • 30
    • 79958736314 scopus 로고    scopus 로고
    • C1 domain residues Lys 2092 and Phe 2093 are of major importance for the endocytic uptake of coagulation factor VIII
    • CrossRef PubMed
    • Henriët, M., van den Biggelaar, M., Rondaij, M., van der Zwaan, C., Mertens, K. and Meijer, A.B. (2011) C1 domain residues Lys 2092 and Phe 2093 are of major importance for the endocytic uptake of coagulation factor VIII. Int. J. Biochem. Cell Biol. 43, 1114-1121 CrossRef PubMed
    • (2011) Int. J. Biochem. Cell Biol. , vol.43 , pp. 1114-1121
    • Henriët, M.1    Van Den Biggelaar, M.2    Rondaij, M.3    Van Der Zwaan, C.4    Mertens, K.5    Meijer, A.B.6
  • 31
    • 77949674869 scopus 로고    scopus 로고
    • Structural basis for receptor recognition of vitamin-B(12)-intrinsic factor complexes
    • CrossRef PubMed
    • Andersen, C.B., Madsen, M., Storm, T., Moestrup, S.K. and Andersen, G.R. (2010) Structural basis for receptor recognition of vitamin-B(12)-intrinsic factor complexes. Nature 464, 445-448 CrossRef PubMed
    • (2010) Nature , vol.464 , pp. 445-448
    • Andersen, C.B.1    Madsen, M.2    Storm, T.3    Moestrup, S.K.4    Andersen, G.R.5


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