-
1
-
-
56949108549
-
Toward scalable parts families for predictable design of biological circuits
-
Lucks, J. B., Qi, L., Whitaker, W. R., and Arkin, A. P. (2008) Toward scalable parts families for predictable design of biological circuits Curr. Opin. Microbiol. 11, 567-573
-
(2008)
Curr. Opin. Microbiol.
, vol.11
, pp. 567-573
-
-
Lucks, J.B.1
Qi, L.2
Whitaker, W.R.3
Arkin, A.P.4
-
2
-
-
34249079154
-
Network motifs: Theory and experimental approaches
-
Alon, U. (2007) Network motifs: Theory and experimental approaches Nat. Rev. Genet. 8, 450-461
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 450-461
-
-
Alon, U.1
-
3
-
-
66249088017
-
The second wave of synthetic biology: From modules to systems
-
Purnick, P. E. M. and Weiss, R. (2009) The second wave of synthetic biology: From modules to systems Nat. Rev. Mol. Cell Biol. 10, 410-422
-
(2009)
Nat. Rev. Mol. Cell Biol.
, vol.10
, pp. 410-422
-
-
Purnick, P.E.M.1
Weiss, R.2
-
4
-
-
77953584054
-
Creation of a bacterial cell controlled by a chemically synthesized genome
-
Gibson, D. G., Glass, J. I., Lartigue, C., Noskov, V. N., Chuang, R.-Y., Algire, M. A., Benders, G. A., Montague, M. G., Ma, L., Moodie, M. M., Merryman, C., Vashee, S., Krishnakumar, R., Assad-Garcia, N., Andrews-Pfannkoch, C., Denisova, E. A., Young, L., Qi, Z.-Q., Segall-Shapiro, T. H., Calvey, C. H., Parmar, P. P., Hutchison, C. A., 3rd, Smith, H. O., and Venter, J. C. (2010) Creation of a bacterial cell controlled by a chemically synthesized genome Science 329, 52-56
-
(2010)
Science
, vol.329
, pp. 52-56
-
-
Gibson, D.G.1
Glass, J.I.2
Lartigue, C.3
Noskov, V.N.4
Chuang, R.-Y.5
Algire, M.A.6
Benders, G.A.7
Montague, M.G.8
Ma, L.9
Moodie, M.M.10
Merryman, C.11
Vashee, S.12
Krishnakumar, R.13
Assad-Garcia, N.14
Andrews-Pfannkoch, C.15
Denisova, E.A.16
Young, L.17
Qi, Z.-Q.18
Segall-Shapiro, T.H.19
Calvey, C.H.20
Parmar, P.P.21
Hutchison, A.C.22
Smith, H.O.23
Venter, J.C.24
more..
-
6
-
-
67349270900
-
Enzymatic assembly of DNA molecules up to several hundred kilobases
-
Gibson, D. G., Young, L., Chuang, R.-Y., Venter, J. C., Hutchison, C. A., and Smith, H. O. (2009) Enzymatic assembly of DNA molecules up to several hundred kilobases Nat. Methods 6, 343-345
-
(2009)
Nat. Methods
, vol.6
, pp. 343-345
-
-
Gibson, D.G.1
Young, L.2
Chuang, R.-Y.3
Venter, J.C.4
Hutchison, C.A.5
Smith, H.O.6
-
7
-
-
65849183178
-
Golden gate shuffling: A one-pot DNA shuffling method based on Type IIs restriction enzymes
-
Engler, C., Gruetzner, R., Kandzia, R., and Marillonnet, S. (2009) Golden gate shuffling: A one-pot DNA shuffling method based on Type IIs restriction enzymes PloS One 4, e5553
-
(2009)
PloS One
, vol.4
, pp. 5553
-
-
Engler, C.1
Gruetzner, R.2
Kandzia, R.3
Marillonnet, S.4
-
8
-
-
84886824017
-
Rapid, modular, and reliable construction of complex mammalian gene circuits
-
Guye, P., Li, Y., Wroblewska, L., Duportet, X., and Weiss, R. (2013) Rapid, modular, and reliable construction of complex mammalian gene circuits Nucleic Acids Res. 41, e156
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 156
-
-
Guye, P.1
Li, Y.2
Wroblewska, L.3
Duportet, X.4
Weiss, R.5
-
9
-
-
84869078490
-
Iterative plug-and-play methodology for constructing and modifying synthetic gene networks
-
Litcofsky, K. D., Afeyan, R. B., Krom, R. J., Khalil, A. S., and Collins, J. J. (2012) Iterative plug-and-play methodology for constructing and modifying synthetic gene networks Nat. Methods 9, 1077-1080
-
(2012)
Nat. Methods
, vol.9
, pp. 1077-1080
-
-
Litcofsky, K.D.1
Afeyan, R.B.2
Krom, R.J.3
Khalil, A.S.4
Collins, J.J.5
-
10
-
-
84868619337
-
Genetic programs constructed from layered logic gates in single cells
-
Moon, T. S., Lou, C., Tamsir, A., Stanton, B. C., and Voigt, C. A. (2012) Genetic programs constructed from layered logic gates in single cells Nature 491, 249-253
-
(2012)
Nature
, vol.491
, pp. 249-253
-
-
Moon, T.S.1
Lou, C.2
Tamsir, A.3
Stanton, B.C.4
Voigt, C.A.5
-
11
-
-
67549145283
-
A synthetic genetic edge detection program
-
Tabor, J. J., Salis, H. M., Simpson, Z. B., Chevalier, A. A., Levskaya, A., Marcotte, E. M., Voigt, C. A., and Ellington, A. D. (2009) A synthetic genetic edge detection program Cell 137, 1272-1281
-
(2009)
Cell
, vol.137
, pp. 1272-1281
-
-
Tabor, J.J.1
Salis, H.M.2
Simpson, Z.B.3
Chevalier, A.A.4
Levskaya, A.5
Marcotte, E.M.6
Voigt, C.A.7
Ellington, A.D.8
-
12
-
-
80052456127
-
Multi-input RNAi-based logic circuit for identification of specific cancer cells
-
Xie, Z., Wroblewska, L., Prochazka, L., Weiss, R., and Benenson, Y. (2011) Multi-input RNAi-based logic circuit for identification of specific cancer cells Science 333, 1307-1311
-
(2011)
Science
, vol.333
, pp. 1307-1311
-
-
Xie, Z.1
Wroblewska, L.2
Prochazka, L.3
Weiss, R.4
Benenson, Y.5
-
13
-
-
84863454666
-
Programmable single-cell mammalian biocomputers
-
Ausländer, S., Ausländer, D., Müller, M., Wieland, M., and Fussenegger, M. (2012) Programmable single-cell mammalian biocomputers Nature 487, 123-127
-
(2012)
Nature
, vol.487
, pp. 123-127
-
-
Ausländer, S.1
Ausländer, D.2
Müller, M.3
Wieland, M.4
Fussenegger, M.5
-
14
-
-
71849110893
-
Next-generation synthetic gene networks
-
Lu, T. K., Khalil, A. S., and Collins, J. J. (2009) Next-generation synthetic gene networks Nat. Biotechnol. 27, 1139-1150
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 1139-1150
-
-
Lu, T.K.1
Khalil, A.S.2
Collins, J.J.3
-
15
-
-
14844358192
-
Ultrasensitivity and noise propagation in a synthetic transcriptional cascade
-
Hooshangi, S., Thiberge, S., and Weiss, R. (2005) Ultrasensitivity and noise propagation in a synthetic transcriptional cascade Proc. Natl. Acad. Sci. U.S.A. 102, 3581-3586
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 3581-3586
-
-
Hooshangi, S.1
Thiberge, S.2
Weiss, R.3
-
16
-
-
66149143984
-
Measuring the activity of BioBrick promoters using an in vivo reference standard
-
Kelly, J. R., Rubin, A. J., Davis, J. H., Ajo-Franklin, C. M., Cumbers, J., Czar, M. J., de Mora, K., Glieberman, A. L., Monie, D. D., and Endy, D. (2009) Measuring the activity of BioBrick promoters using an in vivo reference standard J. Biol. Eng. 3, 4
-
(2009)
J. Biol. Eng.
, vol.3
, pp. 4
-
-
Kelly, J.R.1
Rubin, A.J.2
Davis, J.H.3
Ajo-Franklin, C.M.4
Cumbers, J.5
Czar, M.J.6
De Mora, K.7
Glieberman, A.L.8
Monie, D.D.9
Endy, D.10
-
17
-
-
46949091517
-
Refinement and standardization of synthetic biological parts and devices
-
Canton, B., Labno, A., and Endy, D. (2008) Refinement and standardization of synthetic biological parts and devices Nat. Biotechnol. 26, 787-793
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 787-793
-
-
Canton, B.1
Labno, A.2
Endy, D.3
-
18
-
-
15544371346
-
Gene regulation at the single-cell level
-
Rosenfeld, N., Young, J. W., Alon, U., Swain, P. S., and Elowitz, M. B. (2005) Gene regulation at the single-cell level Science 307, 1962-1965
-
(2005)
Science
, vol.307
, pp. 1962-1965
-
-
Rosenfeld, N.1
Young, J.W.2
Alon, U.3
Swain, P.S.4
Elowitz, M.B.5
-
19
-
-
84876917351
-
-
Computer Science and Artificial Intelligence Laboratory Technical Report; Massachusetts Institute of Technology, Cambridge, MA
-
Beal, J., Weiss, R., Yaman, F., Davidsohn, N., and Adler, A. (2012) A Method for Fast, High-Precision Characterization of Synthetic Biology Devices; Computer Science and Artificial Intelligence Laboratory Technical Report; Massachusetts Institute of Technology, Cambridge, MA.
-
(2012)
A Method for Fast, High-Precision Characterization of Synthetic Biology Devices
-
-
Beal, J.1
Weiss, R.2
Yaman, F.3
Davidsohn, N.4
Adler, A.5
-
20
-
-
84875720517
-
Precise and reliable gene expression via standard transcription and translation initiation elements
-
Mutalik, V. K., Guimaraes, J. C., Cambray, G., Lam, C., Christoffersen, M. J., Mai, Q.-A., Tran, A. B., Paull, M., Keasling, J. D., Arkin, A. P., and Endy, D. (2013) Precise and reliable gene expression via standard transcription and translation initiation elements Nat. Methods 10, 354-360
-
(2013)
Nat. Methods
, vol.10
, pp. 354-360
-
-
Mutalik, V.K.1
Guimaraes, J.C.2
Cambray, G.3
Lam, C.4
Christoffersen, M.J.5
Mai, Q.-A.6
Tran, A.B.7
Paull, M.8
Keasling, J.D.9
Arkin, A.P.10
Endy, D.11
-
21
-
-
84869097100
-
An adaptor from translational to transcriptional control enables predictable assembly of complex regulation
-
Liu, C. C., Qi, L., Lucks, J. B., Segall-Shapiro, T. H., Wang, D., Mutalik, V. K., and Arkin, A. P. (2012) An adaptor from translational to transcriptional control enables predictable assembly of complex regulation Nat. Methods 9, 1088-1094
-
(2012)
Nat. Methods
, vol.9
, pp. 1088-1094
-
-
Liu, C.C.1
Qi, L.2
Lucks, J.B.3
Segall-Shapiro, T.H.4
Wang, D.5
Mutalik, V.K.6
Arkin, A.P.7
-
22
-
-
84882777421
-
Composability of regulatory sequences controlling transcription and translation in Escherichia coli
-
Kosuri, S., Goodman, D. B., Cambray, G., Mutalik, V. K., Gao, Y., Arkin, A. P., Endy, D., and Church, G. M. (2013) Composability of regulatory sequences controlling transcription and translation in Escherichia coli Proc. Natl. Acad. Sci. U.S.A. 110, 14024-14029
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 14024-14029
-
-
Kosuri, S.1
Goodman, D.B.2
Cambray, G.3
Mutalik, V.K.4
Gao, Y.5
Arkin, A.P.6
Endy, D.7
Church, G.M.8
-
23
-
-
79957534528
-
The ribosome binding site calculator
-
Salis, H. M. (2011) The ribosome binding site calculator Methods Enzymol. 498, 19-42
-
(2011)
Methods Enzymol.
, vol.498
, pp. 19-42
-
-
Salis, H.M.1
-
24
-
-
36248980394
-
Accurate prediction of gene feedback circuit behavior from component properties
-
Rosenfeld, N., Young, J. W., Alon, U., Swain, P. S., and Elowitz, M. B. (2007) Accurate prediction of gene feedback circuit behavior from component properties Mol. Syst. Biol. 3, 143
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 143
-
-
Rosenfeld, N.1
Young, J.W.2
Alon, U.3
Swain, P.S.4
Elowitz, M.B.5
-
25
-
-
0034212551
-
Engineering stability in gene networks by autoregulation
-
Becskei, A. and Serrano, L. (2000) Engineering stability in gene networks by autoregulation Nature 405, 590-593
-
(2000)
Nature
, vol.405
, pp. 590-593
-
-
Becskei, A.1
Serrano, L.2
-
26
-
-
33745725673
-
The effect of negative feedback on noise propagation in transcriptional gene networks
-
Hooshangi, S. and Weiss, R. (2006) The effect of negative feedback on noise propagation in transcriptional gene networks Chaos 16, 026108
-
(2006)
Chaos
, vol.16
, pp. 026108
-
-
Hooshangi, S.1
Weiss, R.2
-
27
-
-
57049159362
-
A fast, robust, and tunable synthetic gene oscillator
-
Stricker, J., Cookson, S., Bennett, M. R., Mather, W. H., Tsimring, L. S., and Hasty, J. (2008) A fast, robust, and tunable synthetic gene oscillator Nature 456, 516-519
-
(2008)
Nature
, vol.456
, pp. 516-519
-
-
Stricker, J.1
Cookson, S.2
Bennett, M.R.3
Mather, W.H.4
Tsimring, L.S.5
Hasty, J.6
-
28
-
-
66149172363
-
Diversity-based, model-guided construction of synthetic gene networks with predicted functions
-
Ellis, T., Wang, X., and Collins, J. J. (2009) Diversity-based, model-guided construction of synthetic gene networks with predicted functions Nat. Biotechnol. 27, 465-471
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 465-471
-
-
Ellis, T.1
Wang, X.2
Collins, J.J.3
-
29
-
-
84869476328
-
Ribozyme-based insulator parts buffer synthetic circuits from genetic context
-
Lou, C., Stanton, B., Chen, Y.-J., Munsky, B., and Voigt, C. A. (2012) Ribozyme-based insulator parts buffer synthetic circuits from genetic context Nat. Biotechnol. 30, 1137-1142
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 1137-1142
-
-
Lou, C.1
Stanton, B.2
Chen, Y.-J.3
Munsky, B.4
Voigt, C.A.5
-
30
-
-
0004203940
-
-
Society for Industrial and Applied Mathematics (SIAM), Bangkok, Thailand
-
Strang, G. (2003) Introduction to Linear Algebra. Society for Industrial and Applied Mathematics (SIAM), Bangkok, Thailand.
-
(2003)
Introduction to Linear Algebra
-
-
Strang, G.1
-
32
-
-
2442475398
-
Viral evolution as a tool to improve the tetracycline-regulated gene expression system
-
Das, A. T., Zhou, X., Vink, M., Klaver, B., Verhoef, K., Marzio, G., and Berkhout, B. (2004) Viral evolution as a tool to improve the tetracycline-regulated gene expression system J. Biol. Chem. 279, 18776-18782
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 18776-18782
-
-
Das, A.T.1
Zhou, X.2
Vink, M.3
Klaver, B.4
Verhoef, K.5
Marzio, G.6
Berkhout, B.7
-
33
-
-
28644442724
-
Comparison of single regulated lentiviral vectors with rtTA expression driven by an autoregulatory loop or a constitutive promoter
-
Markusic, D., Oude-Elferink, R., Das, A. T., Berkhout, B., and Seppen, J. (2005) Comparison of single regulated lentiviral vectors with rtTA expression driven by an autoregulatory loop or a constitutive promoter Nucleic Acids Res. 33, e63-e63
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 63-e63
-
-
Markusic, D.1
Oude-Elferink, R.2
Das, A.T.3
Berkhout, B.4
Seppen, J.5
-
34
-
-
80051486871
-
Synthetic incoherent feedforward circuits show adaptation to the amount of their genetic template
-
Bleris, L., Xie, Z., Glass, D., Adadey, A., Sontag, E., and Benenson, Y. (2011) Synthetic incoherent feedforward circuits show adaptation to the amount of their genetic template Mol. Syst. Biol. 7, 519
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 519
-
-
Bleris, L.1
Xie, Z.2
Glass, D.3
Adadey, A.4
Sontag, E.5
Benenson, Y.6
-
35
-
-
14744297069
-
Intracellular routing of plasmid DNA during non-viral gene transfer
-
Lechardeur, D., Verkman, A. S., and Lukacs, G. L. (2005) Intracellular routing of plasmid DNA during non-viral gene transfer Adv. Drug Delivery Rev. 57, 755-767
-
(2005)
Adv. Drug Delivery Rev.
, vol.57
, pp. 755-767
-
-
Lechardeur, D.1
Verkman, A.S.2
Lukacs, G.L.3
|