Molecular characteristics of extended-spectrum cephalosporin-resistant Enterobacteriaceae from humans in the community

PLoS ONE

Volumn 10, Issue 6, 2015, Pages

  Van Hoek, Angela H A M ^a   Schouls, Leo ^a   Van Santen, Marga G ^a   Florijn, Alice ^a   De Greeff, Sabine C ^a   Van Duijkeren, Engeline ^a  

^a NATIONAL INSTITUTE FOR PUBLIC HEALTH AND THE ENVIRONMENT   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIAL TRANSMISSION; BACTERIUM CULTURE; BACTERIUM ISOLATE; CITROBACTER; CITROBACTER AMALONATICUS; CITROBACTER FREUNDII; CONTROLLED STUDY; CROSS-SECTIONAL STUDY; ENTEROBACTER AEROGENES; ENTEROBACTER CLOACAE; ESBL GENE; ESCHERICHIA; ESCHERICHIA COLI; ESCHERICHIA HERMANNII; EXTENDED SPECTRUM BETA LACTAMASE PRODUCING ENTEROBACTERIACEAE; EXTENDED SPECTRUM CEPHALOSPORIN RESISTANT ENTEROBACTERIACEAE; GENE MUTATION; GENE SEQUENCE; GENOTYPE; HAFNIA ALVEI; HUMAN; KLEBSIELLA PNEUMONIAE; KLUYVERA CRYOCRESCENS; MORGANELLA MORGANII; MULTILOCUS SEQUENCE TYPING; NONHUMAN; PAMPC GENE; PANTOEA AGGLOMERANS; PHENOTYPE; PHYLOGENY; POLYMERASE CHAIN REACTION; PREVALENCE; PROMOTER REGION; REPLICON; SHIGELLA; ANIMAL; ANTIBIOTIC RESISTANCE; CHEMISTRY; CHICKEN; CLASSIFICATION; ENTEROBACTERIACEAE; FECES; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; PROCEDURES; RANDOMIZED CONTROLLED TRIAL;

CITROBACTER AMALONATICUS; CITROBACTER FREUNDII; ENTEROBACTER AEROGENES; ENTEROBACTER CLOACAE; ENTEROBACTERIACEAE; ESCHERICHIA COLI; ESCHERICHIA HERMANNII; HAFNIA ALVEI; KLEBSIELLA PNEUMONIAE; KLUYVERA CRYOCRESCENS; MORGANELLA MORGANII; PANTOEA AGGLOMERANS; SHIGELLA;

AMPC BETA-LACTAMASES; ANTIINFECTIVE AGENT; BACTERIAL PROTEIN; BETA LACTAMASE; CEPHALOSPORIN DERIVATIVE;

ADULT; ANIMALS; ANTI-BACTERIAL AGENTS; BACTERIAL PROTEINS; BETA-LACTAMASES; CEPHALOSPORINS; CHICKENS; CROSS-SECTIONAL STUDIES; DRUG RESISTANCE, BACTERIAL; ENTEROBACTERIACEAE; FECES; HUMANS; MULTILOCUS SEQUENCE TYPING; PHYLOGENY; POLYMERASE CHAIN REACTION;

EID: 84934931639     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0129085     Document Type: Article

References (38)

1. Overdevest I, Willemsen I, Rijnsburger M, Eustace A, Xu L, Hawkey P, et al. Extended-spectrum β-lactamase genes of Escherichia coli in chicken meat and humans, the Netherlands. Emerg Infect Dis. 2011; 17: 1216-1222. doi: 10.3201/eid1707.110209 PMID: 21762575
2. Paltansing S, Vlot JA, Kraakman MEM, Mesman R, Bruijning ML, Bernards AT, et al. Extended-spectrum β-lactamase-producing Enterobacteriaceae among travellers from the Netherlands. Emerg Infect Dis. 2013; 19: 1206-1213. doi: 10.3201/eid.1908.130257 PMID: 23885972
3. Reuland EA, Overdevest ITMA, al Naiemi N, Kalpoe JS, Rijnsburger MC, Raadsen SA, et al. High prevalence of ESBL-producing Enterobacteriaceae carriage in Dutch community patients with gastrointestinal complaints. Clin Microbiol Infect. 2013; 19: 542-549. doi: 10.1111/j.1469-0691.2012.03947.x PMID: 22757622
4. Valenza G, Nickel S, Pfeifer Y, Eller C, Krupa E, Lehner-Reindl V, et al. Extended-spectrum-β-lactamase-producing Escherichia coli as intestinal colonizers in the German community. Antimicrob Agents Chemother. 2014; 58: 1228-1230. doi: 10.1128/AAC.01993-13 PMID: 24295972
5. Pfeifer Y, Cullik A, Witte W. Resistance to cephalosporins and carbapenems in Gram-negative bacterial pathogens. Int J Med Microbiol. 2010; 300: 371-379. doi: 10.1016/j.ijmm.2010.04.005 PMID: 20537585
6. Ewers C, Bethe A, Semmler T, Guenther S, Wieler LH. Extended-spectrum β-lactamase-producing and AmpC-producing Escherichia coli from livestock and companion animals, and their putative impact on public health: a global perspective. Clin Microbiol Infect. 2012; 18: 646-655. doi: 10.1111/j.1469-0691.2012.03850.x PMID: 22519858
7. Huijbers PMC, Graat EAM, Haenen APJ, van Santen MG, van Essen-Zandbergen A, Mevius DJ, et al. Extended-spectrum β-lactamase- and AmpC β-lactamase-producing Escherichia coli in broilers and people living and/or working on broiler farms: prevalence, risk factors, and molecular characteristics. J Antimicrob Chemother. 2014; 69: 2669-2675. doi: 10.1093/jac/dku178 PMID: 24879667
8. Liebana E, Carattoli A, Coque TM, Hasman H, Magiorakos AP, Mevius D, et al. Public health risks of enterobacterial isolates producing extended-spectrum β-lactamases or AmpC β-lactamases in food and food-producing animals: an EU perspective of epidemiology, analytical methods, risk factors, and control options. Clin Infect Dis. 2013; 56: 1030-1037. doi: 10.1093/cid/cis1043 PMID: 23243183
9. Smet A, Martel A, Persoons D, Dewulf J, Heyndrickx M, Cloeckaert A, et al. Comparative analysis of extended-spectrum-β-lactamase-carrying plasmids from different members of Enterobacteriaceae isolated from poultry, pigs and humans: evidence for a shared β-lactam resistance gene pool? J Antimicrob Chemother. 2009; 63: 1286-1288. doi: 10.1093/jac/dkp101 PMID: 19297376
10. Dierikx CM, van der Goot J, Fabri T van Essen-Zandbergen A, Smith H, Mevius D. Extended-spectrum-β-lactamase-and AmpC-β-lactamase-producing Escherichia coli in Dutch broilers and broiler farmers. J Antimicrob Chemother. 2013; 68: 60-67. doi: 10.1093/jac/dks349 PMID: 22949623
11. Kluytmans JAJW, Overdevest ITMA, Willemsen I, Kluytmans-van den Bergh MF, van der Zwaluw K, Heck M, et al. Extended-spectrum β-lactamase producing Escherichia coli from retail chicken meat and humans: comparison of strains, plasmids, resistance genes, and virulence factors. Clin Infect Dis. 2013; 56: 478-487. doi: 10.1093/cid/cis929 PMID: 23243181
12. Leverstein-van Hall MA, Dierikx CM, Cohen Stuart J, Voets GM, van den Munckhof MP, van Essen-Zandbergen A, et al. Dutch patients, retail chicken meat and poultry share the same ESBL genes, plasmids and strains. Clin Microbiol Infect. 2011; 17: 873-880. doi: 10.1111/j.1469-0691.2011.03497.x PMID: 21463397
13. Voets GM, Fluit AC, Scharringa J, Schapendonk C, van den Munckhof T, Leverstein-van Hall MA, et al. Identical plasmid AmpC beta-lactamase genes and plasmid types in E. coli isolates from patients and poultry meat in the Netherlands. Int J Food Microbiol. 2013; 167: 359-362. doi: 10.1016/j.ijfoodmicro.2013.10.001 PMID: 24184615
14. Huijbers PMC, de Kraker M, Graat EAM, van Hoek AH, van Santen MG, de Jong MC, et al. Prevalence of extended-spectrum β-lactamase-producing Enterobacteriaceae in humans living in municipalities with high and low broiler density. Clin Microbiol Infect. 2013; 19: E256-E259. doi: 10.1111/1469-0691.12150 PMID: 23397953
15. Clinical and Laboratory Standards Institute. Performance Standards for Antimicrobial Susceptibility Testing: Twenty-second Informational Supplement M100-S22. CLSI, Wayne, PA, USA, 2012.
16. Caroff N, Espaze E, Bérard I, Richet H, Reynaud A. Mutations in the ampC promoter of Escherichia coli isolates resistant to oxyiminocephalosporins without extended spectrum β-lactamase production. FEMS Microbiol Lett. 1999; 173: 459-465. PMID: 10227175
17. Dierikx C, van Essen-Zandbergen A, Veldman K, Smith H, Mevius D. Increased detection of extended spectrum beta-lactamse producing Salmonella enterica and Escherichia coli isolates from poultry. Vet Microbiol. 2010; 145: 273-278. doi: 10.1016/j.vetmic.2010.03.019 PMID: 20395076
18. Hasman H, Mevius D, Veldman K, Olesen I, Aarestrup FM. β-Lactamases among extended-spectrum β lactamase (ESBL)-resistant Salmonella from poultry, poultry products and human patients in The Netherlands. J Antimicrob Chemother. 2005; 56: 115-121. PMID: 15941775
19. Steward CD, Rasheed JK, Hubert SK, Biddle JW, Raney PM, Anderson GJ, et al. Characterization of clinical isolates of Klebsiella pneumoniae from 19 laboratories using the National Committee for Clinical Laboratory Standards extended-spectrum β-lactamase detection methods. J Clin Microbiol. 2001; 39: 2864-2872. PMID: 11474005
20. Paauw A. Fluit AC, Verhoef J, Leverstein-van Hall MA. Enterobacter cloacae outbreak and emergence of quinolone resistance gene in Dutch hospital. Emerg Infect Dis. 2006; 12: 807-812. PMID: 16704842
21. Olesen I, Hasman H, Aarestrup FM. Prevalence of β-lactamases among ampicillin resistant Escherichia coli and Salmonella isolated from food animals in Denmark. Microbial Drug Res. 2004; 10: 334-340. PMID: 15650379
22. Dallenne C, Da Costa A, Decré D, Favier C, Arlet G. Development of a set of multiplex PCR assays for the detection of genes encoding important β-lactamases in Enterobactericeae. J Antimicrob Chemother. 2010; 65: 490-495. doi: 10.1093/jac/dkp498 PMID: 20071363
23. Doumith M, Day MJ, Hope R, Wain J, Woodford N. Improved multiplex PCR strategy for rapid assignment of the four major Escherichia coli phylogenetic groups. J Clin Microbiol. 2012; 50: 3108-3110. doi: 10.1128/JCM.01468-12 PMID: 22785193
24. Escobar-Páramo P, Le Menac'h A, Le Gall T, Amorin C, Gouriou S, Picard B, et al. Identification of forces shaping the commensal Escherichia coli genetic structure by comparing animal and human isolates. Environ Microbiol. 2006; 8: 1975-1984. PMID: 17014496
25. Wirth T, Falush D, Lan R, Colles F, Mensa P, Wieler LH, et al. Sex and virulence in Escherichia coli:an evolutionary perspective. Mol Microbiol. 2006; 60: 1136-1151. PMID: 16689791
26. Hordijk J, Wagenaar JA, Kant A, van Essen-Zandbergen A, Dierikx C, Veltman K, et al. Cross-sectional study on prevalence and molecular characteristics of plasmid mediated ESBL/AmpC-producing Escherichia coli isolated from veal calves at slaughter. PLoS One. 2013; 8: e65681. doi: 10.1371/journal.pone.0065681 PMID: 23724148
27. Carattoli A, Bertini A, Villa L, Falbo V, Hopkins KL, Threlfall EJ. Identification of plasmids by PCR-based replicon typing. J Microbiol Methods 2005 Dec; 63(3):219-28. PMID: 15935499
28. Villa L, García-Fernández A, Fortini D, Carattoli A. Replicon sequence typing of IncF plasmids carrying virulence and resistance determinants. J Antimicrob Chemother. 2010; 65: 2518-2529. doi: 10.1093/jac/dkq347 PMID: 20935300
29. García-Fernández A, Chiaretto G, Bertini A, Villa L, Fortini D, Ricci A, et al. Multilocus sequence typing of IncI1 plasmids carrying extended-spectrum β-lactamases in Escherichia coli and Salmonella of human and animal origin. J Antimicrob Chemother. 2008; 61: 1229-1233. doi: 10.1093/jac/dkn131 PMID: 18367460
30. García-Fernández A, Villa L, Moodley A, Hasman H, Miriagou V, Guardabassi L, et al. Multilocus sequence typing of IncN plasmids. J Antimicrob Chemother. 2011; 66: 1987-1991. doi: 10.1093/jac/dkr225 PMID: 21653604
31. Reuland EA, Halaby T, Hays JP, de Jongh DM, Snetselaar HD, van Keulen M, et al. Plasmid-mediated AmpC: Prevalence in community-acquired isolates in Amsterdam, the Netherlands, and risk factors for carriage. PLoS One http://www.ncbi.nlm.nih.gov/pubmed/?term=Reuland+EA%2C+Halaby+T%2C+Hays+JP%2C+de+Jongh+DM%2C+Snetselaar+HD 2015; 10: e0113033. doi: 10.1371/journal.pone.0113033 PMID: 25587716
32. Garrido A, Seral C, Gude MJ, Casado C, González-Domínguez M, Sáenz Y, et al. Characterization of plasmid-mediated β-lactamases in fecal colonizing patients in the hospital and community setting in Spain. Microb Drug Resist. 2014; 20: 301-304. doi: 10.1089/mdr.2013.0109 PMID: 24328895
33. EARS-Net. Available: http://www.ecdc.europa.eu/en/activities/surveillance/EARS-Net/Pages/index.aspx. Accessed 29 January 2015.
34. Freeman JT, Rubin J, McAuliffe GN, Peirano G, Roberts SA, Drinković D, et al. Differences in risk-factor profiles between patients with ESBL-producing Escherichia coli and Klebsiella pneumoniae: a multicentre case-case comparison study. Antimicrob Resist Infect Control. 2014; 3: 27. doi: 10.1186/2047-2994-3-27 PMID: 25237477
35. Voets GM, Platteel TN, Fluit AC, Scharringa J, Schapendonk CM, Stuart JC, et al. Population distribution of β -lactamase conferring resistance to third-generation cephalosporins in human clinical Enterobacteriaceae in the Netherlands. PLoS One. 2012; 7: e52102. doi: 10.1371/journal.pone.0052102 PMID: 23284886
36. Peirano G, van der Bij AK, Freeman JL, Poirel L, Nordmann P, Costello M, et al. The characteristics of Escherichia coli ST131 that produce extended-spectrum β-lactamases: global distribution of the H30-Rx sublineage. Antimicrob Agents Chemother. 2014; 58: 3762-3767. doi: 10.1128/AAC.02428-14 PMID: 24752265
37. Johnson JR, Delavari P, Kuskowski M, Stell AL. Phylogenetic distribution of extraintestinal virulenceassociated traits in Escherichia coli. J Infect Dis. 2001; 183: 78-88. PMID: 11106538
38. Dierikx CM, van Duijkeren E, Schoormans AHW, van Essen-Zandbergen A, Veldman K, Kant A, et al. Occurrence and characteristics of extended-spectrum-β-lactamase and AmpC-producing clinical isolates derived from companion animals and horses. J Antimicrob Chemother. 2012; 67: 1368-1374. doi: 10.1093/jac/dks049 PMID: 22382469