-
1
-
-
0035252889
-
Ribosomefidelity: TRNA discrimination, proofreading and inducedfit
-
Rodnina MV, Wintermeyer W (2001) Ribosomefidelity: tRNA discrimination, proofreading and inducedfit. Trends Biochem Sci 26: 124-130
-
(2001)
Trends Biochem Sci
, vol.26
, pp. 124-130
-
-
Rodnina, M.V.1
Wintermeyer, W.2
-
2
-
-
0038403669
-
Insights into the decoding mechanism from recent ribosome structures
-
Ogle JM, Carter AP, Ramakrishnan V (2003) Insights into the decoding mechanism from recent ribosome structures. Trends Biochem Sci 28:259-266
-
(2003)
Trends Biochem Sci
, vol.28
, pp. 259-266
-
-
Ogle, J.M.1
Carter, A.P.2
Ramakrishnan, V.3
-
3
-
-
0029169650
-
Genetic dissection of synthesis and function of modified nucleosides in bacterial transfer RNA
-
Bjork GR (1995) Genetic dissection of synthesis and function of modified nucleosides in bacterial transfer RNA. Prog Nucleic Acid Res Mol Biol 50:263-338
-
(1995)
Prog Nucleic Acid Res Mol Biol
, vol.50
, pp. 263-338
-
-
Bjork, G.R.1
-
4
-
-
1242309517
-
Decoding the genome: A modified view
-
Agris PF (2004) Decoding the genome: a modified view. Nucleic Acids Res 32:223-238
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 223-238
-
-
Agris, P.F.1
-
5
-
-
78651335915
-
The RNA modification database RNAMDB: 2011 update
-
Cantara WA, Crain PF, Rozenski J, McCloskey JA, Harris KA, Zhang X, Vendeix FA, Fabris D, Agris PF (2011) The RNA modification database, RNAMDB: 2011 update. Nucleic Acids Res 39:D195-D201
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Cantara, W.A.1
Crain, P.F.2
Rozenski, J.3
McCloskey, J.A.4
Harris, K.A.5
Zhang, X.6
Vendeix, F.A.7
Fabris, D.8
Agris, P.F.9
-
6
-
-
0032052242
-
The presence of modified nucleotides is required for cloverleaf folding of a human mitochondrial tRNA
-
Helm M, Brule H, Degoul F, Cepanec C, Leroux JP, Giege R, Florentz C (1998) The presence of modified nucleotides is required for cloverleaf folding of a human mitochondrial tRNA. Nucleic Acids Res 26:1636-1643
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 1636-1643
-
-
Helm, M.1
Brule, H.2
Degoul, F.3
Cepanec, C.4
Leroux, J.P.5
Giege, R.6
Florentz, C.7
-
7
-
-
0032867610
-
A Watson-Crick base-pair-disrupting methyl group (m1A9) is sufficient for cloverleaf folding of human mitochondrial tRNALys
-
Helm M, Giege R, Florentz C (1999) A Watson-Crick base-pair-disrupting methyl group (m1A9) is sufficient for cloverleaf folding of human mitochondrial tRNALys. Biochemistry 38:13338-13346
-
(1999)
Biochemistry
, vol.38
, pp. 13338-13346
-
-
Helm, M.1
Giege, R.2
Florentz, C.3
-
8
-
-
1842404152
-
The spoU gene of Escherichia coli, the fourth gene of the spoT operon, is essential for tRNA (Gm18) 2-O-methyltransferase activity
-
Persson BC, Jager G, Gustafsson C (1997) The spoU gene of Escherichia coli, the fourth gene of the spoT operon, is essential for tRNA (Gm18) 2-O-methyltransferase activity. Nucleic Acids Res 25:4093-4097
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4093-4097
-
-
Persson, B.C.1
Jager, G.2
Gustafsson, C.3
-
9
-
-
0036776779
-
Three modifications in the D and T arms of tRNA in fluence translation in Escherichia coli and expression of virulence genes in Shigella flexneri
-
Urbonavicius J, Durand JM, Bjork GR (2002) Three modifications in the D and T arms of tRNA in fluence translation in Escherichia coli and expression of virulence genes in Shigella flexneri. J Bacteriol 184:5348-5357
-
(2002)
J Bacteriol
, vol.184
, pp. 5348-5357
-
-
Urbonavicius, J.1
Durand, J.M.2
Bjork, G.R.3
-
10
-
-
0036795285
-
Two proteins that form a complex are required for 7-methylguanosine modification of yeast tRNA
-
Alexandrov A, Martzen MR, Phizicky EM (2002) Two proteins that form a complex are required for 7-methylguanosine modification of yeast tRNA. RNA 8:1253-1266
-
(2002)
RNA
, vol.8
, pp. 1253-1266
-
-
Alexandrov, A.1
Martzen, M.R.2
Phizicky, E.M.3
-
11
-
-
59649123170
-
Identification and analysis of tRNAs that are degraded in Saccharomyces cerevisiae due to lack of modifications
-
Chapter 11
-
Chernyakov I, Baker MA, Grayhack EJ, Phizicky EM (2008) Identification and analysis of tRNAs that are degraded in Saccharomyces cerevisiae due to lack of modifications. Methods Enzymol 449:221-237, Chapter 11
-
(2008)
Methods Enzymol
, vol.449
, pp. 221-237
-
-
Chernyakov, I.1
Baker, M.A.2
Grayhack, E.J.3
Phizicky, E.M.4
-
12
-
-
44149119097
-
Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5-3exonucleases Rat1 and Xrn1
-
Chernyakov I, Whipple JM, Kotelawala L, Grayhack EJ, Phizicky EM (2008) Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5-3exonucleases Rat1 and Xrn1. Genes Dev 22:1369-1380
-
(2008)
Genes Dev
, vol.22
, pp. 1369-1380
-
-
Chernyakov, I.1
Whipple, J.M.2
Kotelawala, L.3
Grayhack, E.J.4
Phizicky, E.M.5
-
13
-
-
0027245490
-
Modification of tRNA as a regulatory device
-
Persson BC (1993) Modification of tRNA as a regulatory device. Mol Microbiol 8: 1011-1016
-
(1993)
Mol Microbiol
, vol.8
, pp. 1011-1016
-
-
Persson, B.C.1
-
14
-
-
0035801225
-
Wobble modification defect in tRNA disturbs codon-anticodon interaction in a mitochondrial disease
-
Yasukawa T, Suzuki T, Ishii N, Ohta S, Watanabe K (2001) Wobble modification defect in tRNA disturbs codon-anticodon interaction in a mitochondrial disease. EMBO J 20:4794-4802
-
(2001)
EMBO J
, vol.20
, pp. 4794-4802
-
-
Yasukawa, T.1
Suzuki, T.2
Ishii, N.3
Ohta, S.4
Watanabe, K.5
-
15
-
-
21144455795
-
Wobble modification deficiency in mutant tRNAs in patients with mitochondrial diseases
-
Yasukawa T, Kirino Y, Ishii N, Holt IJ, Jacobs HT, Makifuchi T, Fukuhara N, Ohta S, Suzuki T, Watanabe K (2005) Wobble modification deficiency in mutant tRNAs in patients with mitochondrial diseases. FEBS Lett 579:2948-2952
-
(2005)
FEBS Lett
, vol.579
, pp. 2948-2952
-
-
Yasukawa, T.1
Kirino, Y.2
Ishii, N.3
Holt, I.J.4
Jacobs, H.T.5
Makifuchi, T.6
Fukuhara, N.7
Ohta, S.8
Suzuki, T.9
Watanabe, K.10
-
16
-
-
18844430007
-
Specific correlation between the wobble modification deficiency in mutant tRNAs and the clinical features of a human mitochondrial disease
-
Kirino Y, Goto Y, Campos Y, Arenas J, Suzuki T (2005) Specific correlation between the wobble modification deficiency in mutant tRNAs and the clinical features of a human mitochondrial disease. Proc Natl Acad Sci U S A 102:7127-7132
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 7127-7132
-
-
Kirino, Y.1
Goto, Y.2
Campos, Y.3
Arenas, J.4
Suzuki, T.5
-
17
-
-
17144367015
-
Breaking the stereo barrier of amino acid attachment to tRNA by a single nucleotide
-
Shitivelband S, Hou YM (2005) Breaking the stereo barrier of amino acid attachment to tRNA by a single nucleotide. J Mol Biol 348: 513-521
-
(2005)
J Mol Biol
, vol.348
, pp. 513-521
-
-
Shitivelband, S.1
Hou, Y.M.2
-
18
-
-
0035174911
-
Chemical and enzymatic synthesis of tRNAs for high-throughput crystallization
-
Sherlin LD, Bullock TL, Nissan TA, Perona JJ, Lariviere FJ, Uhlenbeck OC, Scaringe SA (2001) Chemical and enzymatic synthesis of tRNAs for high-throughput crystallization. RNA 7:1671-1678
-
(2001)
RNA
, vol.7
, pp. 1671-1678
-
-
Sherlin, L.D.1
Bullock, T.L.2
Nissan, T.A.3
Perona, J.J.4
Lariviere, F.J.5
Uhlenbeck, O.C.6
Scaringe, S.A.7
-
19
-
-
0034131335
-
Joining of RNAs by splinted ligation
-
Moore MJ, Query CC (2000) Joining of RNAs by splinted ligation. Methods Enzymol 317:109-123
-
(2000)
Methods Enzymol
, vol.317
, pp. 109-123
-
-
Moore, M.J.1
Query, C.C.2
-
20
-
-
33646778150
-
Biosynthesis of wybutosine, a hyper-modified nucleoside in eukaryotic phenylalanine tRNA
-
Noma A, Kirino Y, Ikeuchi Y, Suzuki T (2006) Biosynthesis of wybutosine, a hyper-modified nucleoside in eukaryotic phenylalanine tRNA. EMBO J 25:2142-2154
-
(2006)
EMBO J
, vol.25
, pp. 2142-2154
-
-
Noma, A.1
Kirino, Y.2
Ikeuchi, Y.3
Suzuki, T.4
-
22
-
-
33644872214
-
Isolation of a site-specifically modified RNA from an unmodified transcript
-
Hou YM, Li Z, Gamper H (2006) Isolation of a site-specifically modified RNA from an unmodified transcript. Nucleic Acids Res 34:e21
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Hou, Y.M.1
Li, Z.2
Gamper, H.3
-
23
-
-
21244451435
-
Crystal structures of RNase H bound to an RNA/DNA hybrid: Substrate specificity and metal-dependent catalysis
-
Nowotny M, Gaidamakov SA, Crouch RJ, Yang W (2005) Crystal structures of RNase H bound to an RNA/DNA hybrid: substrate specificity and metal-dependent catalysis. Cell 121:1005-1016
-
(2005)
Cell
, vol.121
, pp. 1005-1016
-
-
Nowotny, M.1
Gaidamakov, S.A.2
Crouch, R.J.3
Yang, W.4
-
24
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: The Keio collection
-
Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2(2006):0008
-
(2006)
Mol Syst Biol
, vol.2
, Issue.2006
, pp. 0008
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
25
-
-
11144354166
-
Characterization of Streptococcus pneumoniae TrmD, a tRNA methyltransferase essential for growth
-
ODwyer K, Watts JM, Biswas S, Ambrad J, Barber M, Brule H, Petit C, Holmes DJ, Zalacain M, Holmes WM (2004) Characterization of Streptococcus pneumoniae TrmD, a tRNA methyltransferase essential for growth. J Bacteriol 186:2346-2354
-
(2004)
J Bacteriol
, vol.186
, pp. 2346-2354
-
-
Odwyer, K.1
Watts, J.M.2
Biswas, S.3
Ambrad, J.4
Barber, M.5
Brule, H.6
Petit, C.7
Holmes, D.J.8
Zalacain, M.9
Holmes, W.M.10
-
26
-
-
0024316220
-
Prevention of translational frameshifting by the modified nucleoside 1-methylguanosine
-
Bjork GR, Wikstrom PM, Bystrom AS (1989) Prevention of translational frameshifting by the modified nucleoside 1-methylguanosine. Science 244:986-989
-
(1989)
Science
, vol.244
, pp. 986-989
-
-
Bjork, G.R.1
Wikstrom, P.M.2
Bystrom, A.S.3
-
27
-
-
0035863196
-
A primordial tRNA modification required for the evolution of life?
-
Bjork GR, Jacobsson K, Nilsson K, Johansson MJ, Bystrom AS, Persson OP (2001) A primordial tRNA modification required for the evolution of life? EMBO J 20:231-239
-
(2001)
EMBO J
, vol.20
, pp. 231-239
-
-
Bjork, G.R.1
Jacobsson, K.2
Nilsson, K.3
Johansson, M.J.4
Bystrom, A.S.5
Persson, O.P.6
-
28
-
-
20144380970
-
RNA-dependent cysteine biosynthesis in archaea
-
Sauerwald A, Zhu W, Major TA, Roy H, Palioura S, Jahn D, Whitman WB, Yates JR 3rd, Ibba M, Soll D (2005) RNA-dependent cysteine biosynthesis in archaea. Science 307: 1969-1972
-
(2005)
Science
, vol.307
, pp. 1969-1972
-
-
Sauerwald, A.1
Zhu, W.2
Major, T.A.3
Roy, H.4
Palioura, S.5
Jahn, D.6
Whitman, W.B.7
Yates Iii, J.R.8
Ibba, M.9
Soll, D.10
-
29
-
-
34147173498
-
Cysteinyl-tRNA synthetase
-
Ibba M, Francklyn C, Cusack S (eds) Landes Bioscience, Georgetown
-
Hou YM, Perona JJ (2005) Cysteinyl-tRNA synthetase. In: Ibba M, Francklyn C, Cusack S (eds) The aminoacyl-tRNA synthetases. Landes Bioscience, Georgetown, pp 12-23
-
(2005)
The Aminoacyl-tRNA Synthetases
, pp. 12-23
-
-
Hou, Y.M.1
Perona, J.J.2
-
30
-
-
43249105572
-
Aminoacylation of tRNA with phosphoserine for synthesis of cysteinyl-tRNA(Cys)
-
Zhang CM, Liu C, Slater S, Hou YM (2008) Aminoacylation of tRNA with phosphoserine for synthesis of cysteinyl-tRNA(Cys). Nat Struct Mol Biol 15:507-514
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 507-514
-
-
Zhang, C.M.1
Liu, C.2
Slater, S.3
Hou, Y.M.4
-
31
-
-
52049101383
-
The homotetrameric phosphoseryl-tRNA synthetase from Methanosarcina mazei exhibits half-of-the-sites activity
-
Hauenstein SI, Hou YM, Perona JJ (2008) The homotetrameric phosphoseryl-tRNA synthetase from Methanosarcina mazei exhibits half-of-the-sites activity. J Biol Chem 283: 21997-22006
-
(2008)
J Biol Chem
, vol.283
, pp. 21997-22006
-
-
Hauenstein, S.I.1
Hou, Y.M.2
Perona, J.J.3
-
32
-
-
0023665251
-
Escherichia coli thioredoxin confers processivity on the DNA polymerase activity of the gene 5 protein of bacteriophage T7
-
Tabor S, Huber HE, Richardson CC (1987) Escherichia coli thioredoxin confers processivity on the DNA polymerase activity of the gene 5 protein of bacteriophage T7. J Biol Chem 262:16212-16223
-
(1987)
J Biol Chem
, vol.262
, pp. 16212-16223
-
-
Tabor, S.1
Huber, H.E.2
Richardson, C.C.3
-
33
-
-
0023840230
-
OmpT encodes the Escherichia coli outer membrane protease that cleaves T7 RNA polymerase during purification
-
Grodberg J, Dunn JJ (1988) ompT encodes the Escherichia coli outer membrane protease that cleaves T7 RNA polymerase during purification. J Bacteriol 170:1245-1253
-
(1988)
J Bacteriol
, vol.170
, pp. 1245-1253
-
-
Grodberg, J.1
Dunn, J.J.2
-
34
-
-
0031230045
-
The position of sitedirected cleavage of RNA using RNase H and 2-O-methyl oligonucleotides is dependent on the enzyme source
-
Lapham J, Yu YT, Shu MD, Steitz JA, Crothers DM (1997) The position of sitedirected cleavage of RNA using RNase H and 2-O-methyl oligonucleotides is dependent on the enzyme source. RNA 3:950-951
-
(1997)
RNA
, vol.3
, pp. 950-951
-
-
Lapham, J.1
Yu, Y.T.2
Shu, M.D.3
Steitz, J.A.4
Crothers, D.M.5
-
35
-
-
0021099383
-
Transfer RNA pyrophosphorolysis with CTP(ATP):tRNA nucleotidyltransferase. A direct route to tRNAs modified at the 3terminus
-
Francis TA, Ehrenfeld GM, Gregory MR, Hecht SM (1983) Transfer RNA pyrophosphorolysis with CTP(ATP):tRNA nucleotidyltransferase. A direct route to tRNAs modified at the 3terminus. J Biol Chem 258: 4279-4284
-
(1983)
J Biol Chem
, vol.258
, pp. 4279-4284
-
-
Francis, T.A.1
Ehrenfeld, G.M.2
Gregory, M.R.3
Hecht, S.M.4
-
36
-
-
1342307286
-
A primordial RNA modification enzyme: The case of tRNA (m1A) methyltransferase
-
Roovers M, Wouters J, Bujnicki JM, Tricot C, Stalon V, Grosjean H, Droogmans L (2004) A primordial RNA modification enzyme: the case of tRNA (m1A) methyltransferase. Nucleic Acids Res 32:465-476
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 465-476
-
-
Roovers, M.1
Wouters, J.2
Bujnicki, J.M.3
Tricot, C.4
Stalon, V.5
Grosjean, H.6
Droogmans, L.7
-
37
-
-
0037407933
-
Identification of the yeast gene encoding the tRNA m 1 G methyltransferase responsible for modification at position 9
-
Jackman JE, Montange RK, Malik HS, Phizicky EM (2003) Identification of the yeast gene encoding the tRNA m 1 G methyltransferase responsible for modification at position 9. RNA 9:574-585
-
(2003)
RNA
, vol.9
, pp. 574-585
-
-
Jackman, J.E.1
Montange, R.K.2
Malik, H.S.3
Phizicky, E.M.4
-
38
-
-
0031804156
-
Compilation of tRNA sequences and sequences of tRNA genes
-
Sprinzl M, Horn C, Brown M, Ioudovitch A, Steinberg S (1998) Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res 26:148-153
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 148-153
-
-
Sprinzl, M.1
Horn, C.2
Brown, M.3
Ioudovitch, A.4
Steinberg, S.5
-
39
-
-
0032827799
-
A simple and efficient method to reduce nontemplated nucleotide addition at the 3 terminus of RNAs transcribed by T7 RNA polymerase
-
Kao C, Zheng M, Rudisser S (1999) A simple and efficient method to reduce nontemplated nucleotide addition at the 3 terminus of RNAs transcribed by T7 RNA polymerase. RNA 5:1268-1272
-
(1999)
RNA
, vol.5
, pp. 1268-1272
-
-
Kao, C.1
Zheng, M.2
Rudisser, S.3
|