Genetic screens for floral mutants in Arabidopsis thaliana: Enhancers and suppressors

Methods in Molecular Biology

Volumn 1110, Issue , 2014, Pages 127-156

  Dinh, Thanh Theresa ^a   Luscher, Elizabeth ^a   Li, Shaofang ^a   Liu, Xigang ^a   Won, So Youn ^a   Chen, Xuemei ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Arabidopsis; EMS; Floral development; Genetic screen; Map based cloning; Mutagenesis; T DNA; TAIL PCR

Indexed keywords

MELANIN CONCENTRATING HORMONE RECEPTOR 1; MESYLIC ACID ETHYL ESTER;

ALLELE; ARABIDOPSIS THALIANA; ARTICLE; CLEAVED AMPLIFIED POLYMORPHIC SEQUENCE; ENHANCER REGION; GENETIC SCREENING; HIGH THROUGHPUT SEQUENCING; INDEL MUTATION; MOLECULAR CLONING; MUTAGENESIS; NONHUMAN; PHENOTYPE; POINT MUTATION; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; SUPPRESSOR GENE; TRANSCRIPTION INITIATION;

AGROBACTERIUM; ARABIDOPSIS; CLONING, MOLECULAR; DNA, BACTERIAL; DNA, PLANT; ENHANCER ELEMENTS, GENETIC; FLOWERS; GENES, SUPPRESSOR; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; MUTAGENESIS, INSERTIONAL; MUTATION; SEQUENCE ANALYSIS, DNA; TRANSFORMATION, GENETIC;

EID: 84934434674     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4614-9408-9_6     Document Type: Article

References (54)

1. Laibach F (1943) Arabidopsis thaliana (L.) Heynh als objekt fur genetische und entwicklungsphysiologische Untersuchungen. Bot Archiv 44:439-455
2. Leutwiler LS, Hough-Evans BR, Meyerowitz EM (1984) The DNA of Arabidopsis thaliana. Mol Gen Genet 194:15-23
3. Meyerowitz EM (1989) Arabidopsis, a useful weed. Cell 56(2):263-269
4. Meyerowitz EM, Pruitt RE (1985) Arabidopsis thaliana and plant molecular genetics. Science 229(4719):1214-1218
5. Pruitt RE, Meyerowitz EM (1986) Characterization of the genome of Arabidopsis thaliana. J Mol Biol 187(2):169-183
6. Bowman JL, Meyerowitz EM (1991) Genetic control of pattern formation during flower development in Arabidopsis. Symp Soc Exp Biol 45:89-115
7. Bowman JL, Smyth DR, Meyerowitz EM (1989) Genes directing flower development in Arabidopsis. Plant Cell 1(1):37-52
8. Coen ES, Meyerowitz EM (1991) The war of the whorls: genetic interactions controlling flower development. Nature 353(6339):31-37
9. Meyerowitz EM et al (1991) A genetic and molecular model for flower development in Arabidopsis thaliana. Dev Suppl 1:157-167
10. Drews GN, Weigel D, Meyerowitz EM (1991) Floral patterning. Curr Opin Genet Dev 1(2):174-178
11. Jack T, Brockman LL, Meyerowitz EM (1992) The homeotic gene APETALA3 of Arabidopsis thaliana encodes a MADS box and is expressed in petals and stamens. Cell 68(4):683-697
12. Smyth DR, Bowman JL, Meyerowitz EM (1990) Early flower development in Arabidopsis. Plant Cell 2(8):755-767
13. Weigel D et al (1992) LEAFY controls floral meristem identity in Arabidopsis. Cell 69(5):843-859
14. Yanofsky MF et al (1990) The protein encoded by the Arabidopsis homeotic gene agamous resembles transcription factors. Nature 346(6279):35-39
15. Bowman JL, Smyth DR (1999) CRABS CLAW, a gene that regulates carpel and nectary development in Arabidopsis, encodes a novel protein with zinc finger and helix-loop-helix domains. Development 126(11):2387-2396
16. Sieburth LE, Running MP, Meyerowitz EM (1995) Genetic separation of third and fourth whorl functions of AGAMOUS. Plant Cell 7(8):1249-1258
17. Chen X, Meyerowitz EM (1999) HUA1 and HUA2 are two members of the floral homeotic AGAMOUS pathway. Mol Cell 3(3):349-360
18. Cheng Y et al (2003) Two RNA binding proteins, HEN4 and HUA1, act in the processing of AGAMOUS pre-mRNA in Arabidopsis thaliana. Dev Cell 4(1):53-66
19. Li J, Jia D, Chen X (2001) HUA1, a regulator of stamen and carpel identities in Arabidopsis, codes for a nuclear RNA binding protein. Plant Cell 13(10):2269-2281
20. Ji L et al (2011) ARGONAUTE10 and ARGONAUTE1 regulate the termination of floral stem cells through two microRNAs in Arabidopsis. PLoS Genet 7(3):e1001358
21. Chen X (2004) A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science 303(5666):2022-2025
22. Liu X et al (2011) AGAMOUS terminates floral stem cell maintenance in Arabidopsis by directly repressing WUSCHEL through recruitment of Polycomb Group proteins. Plant Cell 23(10):3654-3670
23. Siegfried KR et al (1999) Members of the YABBY gene family specify abaxial cell fate in Arabidopsis. Development 126(18):4117-4128
24. Sawa S et al (1999) FILAMENTOUS FLOWER, a meristem and organ identity gene of Arabidopsis, encodes a protein with a zinc finger and HMG-related domains. Genes Dev 13(9):1079-1088
25. Eshed Y, Baum SF, Bowman JL (1999) Distinct mechanisms promote polarity establishment in carpels of Arabidopsis. Cell 99(2):199-209
26. Telfer A, Poethig RS (1998) HASTY: A gene that regulates the timing of shoot maturation in Arabidopsis thaliana. Development 125(10):1889-1898
27. Wagner D, Meyerowitz EM (2002) SPLAYED, a novel SWI/SNF ATPase homolog, controls reproductive development in Arabidopsis. Curr Biol 12(2):85-94
28. Eshed Y et al (2001) Establishment of polarity in lateral organs of plants. Curr Biol 11(16):1251-1260
29. Muller R, Bleckmann A, Simon R (2008) The receptor kinase CORYNE of Arabidopsis transmits the stem cell-limiting signal CLAVATA3 independently of CLAVATA1. Plant Cell 20(4):934-946
30. Brand U et al (2000) Dependence of stem cell fate in Arabidopsis on a feedback loop regulated by CLV3 activity. Science 289(5479):617-619
31. Nimchuk ZL, Tarr PT, Meyerowitz EM (2011) An evolutionarily conserved pseudokinase mediates stem cell production in plants. Plant Cell 23(3):851-854
32. Nag A, Yang Y, Jack T (2007) DORNROSCHEN-LIKE, an AP2 gene, is necessary for stamen emergence in Arabidopsis. Plant Mol Biol 65(3):219-232
33. Levin JZ et al (1998) A genetic screen for modifiers of UFO meristem activity identifies three novel FUSED FLORAL ORGANS genes required for early flower development in Arabidopsis. Genetics 149(2):579-595
34. Page DR, Grossniklaus U (2002) The art and design of genetic screens: Arabidopsis thaliana. Nat Rev Genet 3(2):124-136
35. Papdi C et al (2010) Genetic screens to identify plant stress genes. Methods Mol Biol 639:121-139
36. Kim Y, Schumaker KS, Zhu JK (2006) EMS mutagenesis of Arabidopsis. Methods Mol Biol 323:101-103
37. Krieg DR (1963) Ethyl methanesulfonateinduced reversion of bacteriophage T4rII mutants. Genetics 48:561-580
38. Greene EA et al (2003) Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis. Genetics 164(2):731-740
39. McCallum CM et al (2000) Targeted screening for induced mutations. Nat Biotechnol 18(4):455-457
40. Jander G et al (2003) Ethylmethanesulfonate saturation mutagenesis in Arabidopsis to determine frequency of herbicide resistance. Plant Physiol 131(1):139-146
41. Clough SJ, Bent AF (1998) Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16(6):735-743
42. Tzfira T et al (2004) Agrobacterium T-DNA integration: molecules and models. Trends Genet 20(8):375-383
43. Szabados L et al (2002) Distribution of 1000 sequenced T-DNA tags in the Arabidopsis genome. Plant J 32(2):233-242
44. Wang Y (2008) How effective is T-DNA insertional mutagenesis in Arabidopsis J Biochem Tech 1(1):11-20
45. Li Y et al (2006) Analysis of T-DNA insertion site distribution patterns in Arabidopsis thaliana reveals special features of genes without insertions. Genomics 87(5):645-652
46. Weigel D et al (2000) Activation tagging in Arabidopsis. Plant Physiol 122(4):1003-1013
47. Radhamony RN, Prasad AM, Srinivasan R (2005) T-DNA insertional mutagenesis in Arabidopsis: A tool for functional genomics. Electr J Biotech 8(1). doi: 10.2225/ vol8-issue1-fulltext-4
48. Lukowitz W, Gillmor CS, Scheible WR (2000) Positional cloning in Arabidopsis. Why it feels good to have a genome initiative working for you. Plant Physiol 123(3):795-805
49. Liu YG, Whittier RF (1995) Thermal asymmetric interlaced PCR: automatable amplification and sequencing of insert end fragments from P1 and YAC clones for chromosome walking. Genomics 25(3):674-681
50. Liu YG, Chen Y (2007) High-efficiency thermal asymmetric interlaced PCR for amplification of unknown flanking sequences. Biotechniques 43(5):649-654
51. Austin RS et al (2011) Next-generation mapping of Arabidopsis genes. Plant J 67(4):715-725
52. Schneeberger K et al (2009) SHOREmap: simultaneous mapping and mutation identification by deep sequencing. Nat Methods 6(8):550-551
53. Zhu Y et al (2012) Gene discovery using mutagen-induced polymorphisms and deep sequencing: application to plant disease resistance. Genetics 192(1):139-146
54. Sarin S et al (2008) Caenorhabditis elegans mutant allele identification by whole-genome sequencing. Nat Methods 5(10):865-867