-
1
-
-
84870918230
-
Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature
-
P.G. Arnison, M.J. Bibb, G. Bierbaum, A.A. Bowers, T.S. Bugni, G. Bulaj, J.A. Camarero, D.J. Campopiano, G.L. Challis, J. Clardy, P.D. Cotter, D.J. Craik, M. Dawson, E. Dittmann, S. Donadio, P.C. Dorrestein, K.D. Entian, M.A. Fischbach, J.S. Garavelli, U. Goransson, C.W. Gruber, D.H. Haft, T.K. Hemscheidt, C. Hertweck, C. Hill, A.R. Horswill, M. Jaspars, W.L. Kelly, J.P. Klinman, O.P. Kuipers, A.J. Link, W. Liu, M.A. Marahiel, D.A. Mitchell, G.N. Moll, B.S. Moore, R. Muller, S.K. Nair, I.F. Nes, G.E. Norris, B.M. Olivera, H. Onaka, M.L. Patchett, J. Piel, M.J. Reaney, S. Rebuffat, R.P. Ross, H.G. Sahl, E.W. Schmidt, M.E. Selsted, K. Severinov, B. Shen, K. Sivonen, L. Smith, T. Stein, R.D. Sussmuth, J.R. Tagg, G.L. Tang, A.W. Truman, J.C. Vederas, C.T. Walsh, J.D. Walton, S.C. Wenzel, J.M. Willey, and W.A. van der Donk Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature Nat. Prod. Rep. 30 2013 108 160
-
(2013)
Nat. Prod. Rep.
, vol.30
, pp. 108-160
-
-
Arnison, P.G.1
Bibb, M.J.2
Bierbaum, G.3
Bowers, A.A.4
Bugni, T.S.5
Bulaj, G.6
Camarero, J.A.7
Campopiano, D.J.8
Challis, G.L.9
Clardy, J.10
Cotter, P.D.11
Craik, D.J.12
Dawson, M.13
Dittmann, E.14
Donadio, S.15
Dorrestein, P.C.16
Entian, K.D.17
Fischbach, M.A.18
Garavelli, J.S.19
Goransson, U.20
Gruber, C.W.21
Haft, D.H.22
Hemscheidt, T.K.23
Hertweck, C.24
Hill, C.25
Horswill, A.R.26
Jaspars, M.27
Kelly, W.L.28
Klinman, J.P.29
Kuipers, O.P.30
Link, A.J.31
Liu, W.32
Marahiel, M.A.33
Mitchell, D.A.34
Moll, G.N.35
Moore, B.S.36
Muller, R.37
Nair, S.K.38
Nes, I.F.39
Norris, G.E.40
Olivera, B.M.41
Onaka, H.42
Patchett, M.L.43
Piel, J.44
Reaney, M.J.45
Rebuffat, S.46
Ross, R.P.47
Sahl, H.G.48
Schmidt, E.W.49
Selsted, M.E.50
Severinov, K.51
Shen, B.52
Sivonen, K.53
Smith, L.54
Stein, T.55
Sussmuth, R.D.56
Tagg, J.R.57
Tang, G.L.58
Truman, A.W.59
Vederas, J.C.60
Walsh, C.T.61
Walton, J.D.62
Wenzel, S.C.63
Willey, J.M.64
Van Der Donk, W.A.65
more..
-
2
-
-
84881237635
-
Radical S-adenosylmethionine enzyme catalyzed thioether bond formation in sactipeptide biosynthesis
-
L. Fluhe, and M.A. Marahiel Radical S-adenosylmethionine enzyme catalyzed thioether bond formation in sactipeptide biosynthesis Curr. Opin. Chem. Biol. 17 2013 605 612
-
(2013)
Curr. Opin. Chem. Biol.
, vol.17
, pp. 605-612
-
-
Fluhe, L.1
Marahiel, M.A.2
-
3
-
-
0022413987
-
Subtilosin A, a new antibiotic peptide produced by Bacillus subtilis 168: isolation, structural analysis, and biogenesis
-
K. Babasaki, T. Takao, Y. Shimonishi, and K. Kurahashi Subtilosin A, a new antibiotic peptide produced by Bacillus subtilis 168: isolation, structural analysis, and biogenesis J. Biochem. 98 1985 585 603
-
(1985)
J. Biochem.
, vol.98
, pp. 585-603
-
-
Babasaki, K.1
Takao, T.2
Shimonishi, Y.3
Kurahashi, K.4
-
4
-
-
0037462081
-
Structure of subtilosin A, an antimicrobial peptide from Bacillus subtilis with unusual posttranslational modifications linking cysteine sulfurs to alpha-carbons of phenylalanine and threonine
-
K. Kawulka, T. Sprules, R.T. McKay, P. Mercier, C.M. Diaper, P. Zuber, and J.C. Vederas Structure of subtilosin A, an antimicrobial peptide from Bacillus subtilis with unusual posttranslational modifications linking cysteine sulfurs to alpha-carbons of phenylalanine and threonine J. Am. Chem. Soc. 125 2003 4726 4727
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 4726-4727
-
-
Kawulka, K.1
Sprules, T.2
McKay, R.T.3
Mercier, P.4
Diaper, C.M.5
Zuber, P.6
Vederas, J.C.7
-
5
-
-
77957977117
-
Imaging mass spectrometry of intraspecies metabolic exchange revealed the cannibalistic factors of Bacillus subtilis
-
W.T. Liu, Y.L. Yang, Y. Xu, A. Lamsa, N.M. Haste, J.Y. Yang, J. Ng, D. Gonzalez, C.D. Ellermeier, P.D. Straight, P.A. Pevzner, J. Pogliano, V. Nizet, K. Pogliano, and P.C. Dorrestein Imaging mass spectrometry of intraspecies metabolic exchange revealed the cannibalistic factors of Bacillus subtilis Proc. Natl. Acad. Sci. U.S.A. 107 2010 16286 16290
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 16286-16290
-
-
Liu, W.T.1
Yang, Y.L.2
Xu, Y.3
Lamsa, A.4
Haste, N.M.5
Yang, J.Y.6
Ng, J.7
Gonzalez, D.8
Ellermeier, C.D.9
Straight, P.D.10
Pevzner, P.A.11
Pogliano, J.12
Nizet, V.13
Pogliano, K.14
Dorrestein, P.C.15
-
6
-
-
77952679997
-
Thuricin CD, a posttranslationally modified bacteriocin with a narrow spectrum of activity against Clostridium difficile
-
M.C. Rea, C.S. Sit, E. Clayton, P.M. O'Connor, R.M. Whittal, J. Zheng, J.C. Vederas, R.P. Ross, and C. Hill Thuricin CD, a posttranslationally modified bacteriocin with a narrow spectrum of activity against Clostridium difficile Proc. Natl. Acad. Sci. U.S.A. 107 2010 9352 9357
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 9352-9357
-
-
Rea, M.C.1
Sit, C.S.2
Clayton, E.3
O'Connor, P.M.4
Whittal, R.M.5
Zheng, J.6
Vederas, J.C.7
Ross, R.P.8
Hill, C.9
-
7
-
-
79957690316
-
The 3D structure of thuricin CD, a two-component bacteriocin with cysteine sulfur to alpha-carbon cross-links
-
C.S. Sit, R.T. McKay, C. Hill, R.P. Ross, and J.C. Vederas The 3D structure of thuricin CD, a two-component bacteriocin with cysteine sulfur to alpha-carbon cross-links J. Am. Chem. Soc. 133 2011 7680 7683
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 7680-7683
-
-
Sit, C.S.1
Mckay, R.T.2
Hill, C.3
Ross, R.P.4
Vederas, J.C.5
-
8
-
-
80052485163
-
The 3D solution structure of thurincin H, a bacteriocin with four sulfur to alpha-carbon crosslinks
-
C.S. Sit, M.J. van Belkum, R.T. McKay, R.W. Worobo, and J.C. Vederas The 3D solution structure of thurincin H, a bacteriocin with four sulfur to alpha-carbon crosslinks Angew. Chem. Int. Ed. Engl. 50 2011 8718 8721
-
(2011)
Angew. Chem. Int. Ed. Engl.
, vol.50
, pp. 8718-8721
-
-
Sit, C.S.1
Van Belkum, M.J.2
McKay, R.T.3
Worobo, R.W.4
Vederas, J.C.5
-
9
-
-
54249143112
-
Spermicidal activity of the safe natural antimicrobial peptide subtilosin
-
K.E. Sutyak, R.A. Anderson, S.E. Dover, K.A. Feathergill, A.A. Aroutcheva, S. Faro, and M.L. Chikindas Spermicidal activity of the safe natural antimicrobial peptide subtilosin Infect. Dis. Obstet. Gynecol. 2008 2008 540758
-
(2008)
Infect. Dis. Obstet. Gynecol.
, vol.2008
, pp. 540758
-
-
Sutyak, K.E.1
Anderson, R.A.2
Dover, S.E.3
Feathergill, K.A.4
Aroutcheva, A.A.5
Faro, S.6
Chikindas, M.L.7
-
10
-
-
43549117478
-
Spermicidal bacteriocins: lacticin 3147 and subtilosin A
-
L. Silkin, S. Hamza, S. Kaufman, S.L. Cobb, and J.C. Vederas Spermicidal bacteriocins: lacticin 3147 and subtilosin A Bioorg. Med. Chem. Lett. 18 2008 3103 3106
-
(2008)
Bioorg. Med. Chem. Lett.
, vol.18
, pp. 3103-3106
-
-
Silkin, L.1
Hamza, S.2
Kaufman, S.3
Cobb, S.L.4
Vederas, J.C.5
-
11
-
-
69949088377
-
Isolation of a variant of subtilosin A with hemolytic activity
-
T. Huang, H. Geng, V.R. Miyyapuram, C.S. Sit, J.C. Vederas, and M.M. Nakano Isolation of a variant of subtilosin A with hemolytic activity J. Bacteriol. 191 2009 5690 5696
-
(2009)
J. Bacteriol.
, vol.191
, pp. 5690-5696
-
-
Huang, T.1
Geng, H.2
Miyyapuram, V.R.3
Sit, C.S.4
Vederas, J.C.5
Nakano, M.M.6
-
12
-
-
70349234326
-
Biosynthesis and transcriptional analysis of thurincin H, a tandem repeated bacteriocin genetic locus, produced by Bacillus thuringiensis SF361
-
H. Lee, J.J. Churey, and R.W. Worobo Biosynthesis and transcriptional analysis of thurincin H, a tandem repeated bacteriocin genetic locus, produced by Bacillus thuringiensis SF361 FEMS Microbiol. Lett. 299 2009 205 213
-
(2009)
FEMS Microbiol. Lett.
, vol.299
, pp. 205-213
-
-
Lee, H.1
Churey, J.J.2
Worobo, R.W.3
-
15
-
-
84858701614
-
The radical SAM enzyme AlbA catalyzes thioether bond formation in subtilosin A
-
L. Fluhe, T.A. Knappe, M.J. Gattner, A. Schafer, O. Burghaus, U. Linne, and M.A. Marahiel The radical SAM enzyme AlbA catalyzes thioether bond formation in subtilosin A Nat. Chem. Biol. 8 2012 350 357
-
(2012)
Nat. Chem. Biol.
, vol.8
, pp. 350-357
-
-
Fluhe, L.1
Knappe, T.A.2
Gattner, M.J.3
Schafer, A.4
Burghaus, O.5
Linne, U.6
Marahiel, M.A.7
-
16
-
-
84872801335
-
Two [4Fe-4S] clusters containing radical SAM enzyme SkfB catalyze thioether bond formation during the maturation of the sporulation killing factor
-
L. Fluhe, O. Burghaus, B.M. Wieckowski, T.W. Giessen, U. Linne, and M.A. Marahiel Two [4Fe-4S] clusters containing radical SAM enzyme SkfB catalyze thioether bond formation during the maturation of the sporulation killing factor J. Am. Chem. Soc. 135 2013 959 962
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 959-962
-
-
Fluhe, L.1
Burghaus, O.2
Wieckowski, B.M.3
Giessen, T.W.4
Linne, U.5
Marahiel, M.A.6
-
17
-
-
79958173211
-
Biological systems discovery in silico: radical S-adenosylmethionine protein families and their target peptides for posttranslational modification
-
D.H. Haft, and M.K. Basu Biological systems discovery in silico: radical S-adenosylmethionine protein families and their target peptides for posttranslational modification J. Bacteriol. 193 2011 2745 2755
-
(2011)
J. Bacteriol.
, vol.193
, pp. 2745-2755
-
-
Haft, D.H.1
Basu, M.K.2
-
18
-
-
84858693177
-
Distribution and properties of the genes encoding the biosynthesis of the bacterial cofactor, pyrroloquinoline quinone
-
Y.Q. Shen, F. Bonnot, E.M. Imsand, J.M. RoseFigura, K. Sjolander, and J.P. Klinman Distribution and properties of the genes encoding the biosynthesis of the bacterial cofactor, pyrroloquinoline quinone Biochemistry 51 2012 2265 2275
-
(2012)
Biochemistry
, vol.51
, pp. 2265-2275
-
-
Shen, Y.Q.1
Bonnot, F.2
Imsand, E.M.3
Rosefigura, J.M.4
Sjolander, K.5
Klinman, J.P.6
-
19
-
-
77956457511
-
Interaction of PqqE and PqqD in the pyrroloquinoline quinone (PQQ) biosynthetic pathway links PqqD to the radical SAM superfamily
-
S.R. Wecksler, S. Stoll, A.T. Iavarone, E.M. Imsand, H. Tran, R.D. Britt, and J.P. Klinman Interaction of PqqE and PqqD in the pyrroloquinoline quinone (PQQ) biosynthetic pathway links PqqD to the radical SAM superfamily Chem. Commun. 46 2010 7031 7033
-
(2010)
Chem. Commun.
, vol.46
, pp. 7031-7033
-
-
Wecksler, S.R.1
Stoll, S.2
Iavarone, A.T.3
Imsand, E.M.4
Tran, H.5
Britt, R.D.6
Klinman, J.P.7
-
20
-
-
0035902555
-
Spectroscopic changes during a single turnover of biotin synthase: destruction of a [2Fe-2S] cluster accompanies sulfur insertion
-
N.B. Ugulava, C.J. Sacanell, and J.T. Jarrett Spectroscopic changes during a single turnover of biotin synthase: destruction of a [2Fe-2S] cluster accompanies sulfur insertion Biochemistry 40 2001 8352 8358
-
(2001)
Biochemistry
, vol.40
, pp. 8352-8358
-
-
Ugulava, N.B.1
Sacanell, C.J.2
Jarrett, J.T.3
-
21
-
-
84866036753
-
Biotin synthase: insights into radical-mediated carbon-sulfur bond formation
-
C.J. Fugate, and J.T. Jarrett Biotin synthase: insights into radical-mediated carbon-sulfur bond formation Biochim. Biophys. Acta 1824 2012 1213 1222
-
(2012)
Biochim. Biophys. Acta
, vol.1824
, pp. 1213-1222
-
-
Fugate, C.J.1
Jarrett, J.T.2
-
22
-
-
16544395270
-
Site-directed, Ligase-Independent Mutagenesis (SLIM): a single-tube methodology approaching 100% efficiency in 4 h
-
J. Chiu, P.E. March, R. Lee, and D. Tillett Site-directed, Ligase-Independent Mutagenesis (SLIM): a single-tube methodology approaching 100% efficiency in 4 h Nucleic Acids Res. 32 2004 e174
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. e174
-
-
Chiu, J.1
March, P.E.2
Lee, R.3
Tillett, D.4
-
23
-
-
42249087464
-
Site-directed, Ligase-Independent Mutagenesis (SLIM) for highly efficient mutagenesis of plasmids greater than 8 kb
-
J. Chiu, D. Tillett, I.W. Dawes, and P.E. March Site-directed, Ligase-Independent Mutagenesis (SLIM) for highly efficient mutagenesis of plasmids greater than 8 kb J. Microbiol. Methods 73 2008 195 198
-
(2008)
J. Microbiol. Methods
, vol.73
, pp. 195-198
-
-
Chiu, J.1
Tillett, D.2
Dawes, I.W.3
March, P.E.4
-
24
-
-
0024357799
-
A simple method for site-directed mutagenesis using the polymerase chain reaction
-
A. Hemsley, N. Arnheim, M.D. Toney, G. Cortopassi, and D.J. Galas A simple method for site-directed mutagenesis using the polymerase chain reaction Nucleic Acids Res. 17 1989 6545 6551
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 6545-6551
-
-
Hemsley, A.1
Arnheim, N.2
Toney, M.D.3
Cortopassi, G.4
Galas, D.J.5
-
25
-
-
3242887157
-
CD-Search: protein domain annotations on the fly
-
A. Marchler-Bauer, and S.H. Bryant CD-Search: protein domain annotations on the fly Nucleic Acids Res. 32 2004 W327 W331
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. W327-W331
-
-
Marchler-Bauer, A.1
Bryant, S.H.2
-
26
-
-
58149203237
-
CDD: specific functional annotation with the Conserved Domain Database
-
A. Marchler-Bauer, J.B. Anderson, F. Chitsaz, M.K. Derbyshire, C. DeWeese-Scott, J.H. Fong, L.Y. Geer, R.C. Geer, N.R. Gonzales, M. Gwadz, S. He, D.I. Hurwitz, J.D. Jackson, Z. Ke, C.J. Lanczycki, C.A. Liebert, C. Liu, F. Lu, S. Lu, G.H. Marchler, M. Mullokandov, J.S. Song, A. Tasneem, N. Thanki, R.A. Yamashita, D. Zhang, N. Zhang, and S.H. Bryant CDD: specific functional annotation with the Conserved Domain Database Nucleic Acids Res. 37 2009 D205 D210
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D205-D210
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Chitsaz, F.3
Derbyshire, M.K.4
DeWeese-Scott, C.5
Fong, J.H.6
Geer, L.Y.7
Geer, R.C.8
Gonzales, N.R.9
Gwadz, M.10
He, S.11
Hurwitz, D.I.12
Jackson, J.D.13
Ke, Z.14
Lanczycki, C.J.15
Liebert, C.A.16
Liu, C.17
Lu, F.18
Lu, S.19
Marchler, G.H.20
Mullokandov, M.21
Song, J.S.22
Tasneem, A.23
Thanki, N.24
Yamashita, R.A.25
Zhang, D.26
Zhang, N.27
Bryant, S.H.28
more..
-
27
-
-
78651285748
-
CDD: a Conserved Domain Database for the functional annotation of proteins
-
A. Marchler-Bauer, S. Lu, J.B. Anderson, F. Chitsaz, M.K. Derbyshire, C. DeWeese-Scott, J.H. Fong, L.Y. Geer, R.C. Geer, N.R. Gonzales, M. Gwadz, D.I. Hurwitz, J.D. Jackson, Z. Ke, C.J. Lanczycki, F. Lu, G.H. Marchler, M. Mullokandov, M.V. Omelchenko, C.L. Robertson, J.S. Song, N. Thanki, R.A. Yamashita, D. Zhang, N. Zhang, C. Zheng, and S.H. Bryant CDD: a Conserved Domain Database for the functional annotation of proteins Nucleic Acids Res. 39 2011 D225 D229
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D225-D229
-
-
Marchler-Bauer, A.1
Lu, S.2
Anderson, J.B.3
Chitsaz, F.4
Derbyshire, M.K.5
DeWeese-Scott, C.6
Fong, J.H.7
Geer, L.Y.8
Geer, R.C.9
Gonzales, N.R.10
Gwadz, M.11
Hurwitz, D.I.12
Jackson, J.D.13
Ke, Z.14
Lanczycki, C.J.15
Lu, F.16
Marchler, G.H.17
Mullokandov, M.18
Omelchenko, M.V.19
Robertson, C.L.20
Song, J.S.21
Thanki, N.22
Yamashita, R.A.23
Zhang, D.24
Zhang, N.25
Zheng, C.26
Bryant, S.H.27
more..
|